NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|29437279|gb|AAH49553|]
View 

Coiled-coil domain containing 70 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG5493 super family cl35008
Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only] ...
 96-162 2.80e-03

Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only];


The actual alignment was detected with superfamily member COG5493:

Pssm-ID: 444244 [Multi-domain]  Cd Length: 239  Bit Score: 37.65  E-value: 2.80e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 29437279  96 FWEMEKSFREEEKTFWKkyrtfWKEDKAFWREDNALWERDRNLLQEDKALWEEEKALWVEERALLAE 162
Cdd:COG5493  36 LEELLERLEKLEEQMRK-----WEEQLRKLEEEIKKLREQVRKLEEDVKRLEEQERKLEEAMAEHSE 97
 
Name Accession Description Interval E-value
COG5493 COG5493
Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only] ...
 96-162 2.80e-03

Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only];


Pssm-ID: 444244 [Multi-domain]  Cd Length: 239  Bit Score: 37.65  E-value: 2.80e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 29437279  96 FWEMEKSFREEEKTFWKkyrtfWKEDKAFWREDNALWERDRNLLQEDKALWEEEKALWVEERALLAE 162
Cdd:COG5493  36 LEELLERLEKLEEQMRK-----WEEQLRKLEEEIKKLREQVRKLEEDVKRLEEQERKLEEAMAEHSE 97
 
Name Accession Description Interval E-value
COG5493 COG5493
Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only] ...
 96-162 2.80e-03

Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only];


Pssm-ID: 444244 [Multi-domain]  Cd Length: 239  Bit Score: 37.65  E-value: 2.80e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 29437279  96 FWEMEKSFREEEKTFWKkyrtfWKEDKAFWREDNALWERDRNLLQEDKALWEEEKALWVEERALLAE 162
Cdd:COG5493  36 LEELLERLEKLEEQMRK-----WEEQLRKLEEEIKKLREQVRKLEEDVKRLEEQERKLEEAMAEHSE 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH