NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15341962|gb|AAH13174|]
View 

MUDENG protein [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
AP_MHD_Cterm super family cl10970
C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD); ...
196-241 1.52e-18

C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD); This family corresponds to the C-terminal domain of heterotetrameric AP complexes medium mu subunits and its homologs existing in monomeric stonins, delta-subunit of the heteroheptameric coat protein I (delta-COPI), a protein encoded by a pro-death gene referred as MuD (also known as MUDENG, mu-2 related death-inducing gene), an endocytic adaptor syp1, the mammalian FCH domain only proteins (FCHo1/2), SH3-containing GRB2-like protein 3-interacting protein 1 (SGIP1), and related proteins. AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. Stonins have been characterized as clathrin-dependent AP-2 mu chain related factors and may act as cargo-specific sorting adaptors in endocytosis. Coat protein complex I (COPI)-coated vesicles function in the early secretory pathway. They mediate the retrograde transport from the Golgi to the ER, and intra-Golgi transport. MuD is distantly related to the C-terminal domain of mu2 subunit of AP-2. It is able to induce cell death by itself and plays an important role in cell death in various tissues. Syp1 represents a novel type of endocytic adaptor protein that participates in endocytosis, promotes vesicle tabulation, and contributes to cell polarity and stress responses. It shares the same domain architecture with its two ubiquitously expressed mammalian counterparts, FCHo1/2, which represent key initial proteins ultimately controlling cellular nutrient uptake, receptor regulation, and synaptic vesicle retrieval. They bind specifically to the plasma membrane and recruit the scaffold proteins eps15 and intersectin, which subsequently engage the adaptor complex AP2 and clathrin, leading to coated vesicle formation. Another mammalian neuronal-specific protein SGIP1 does have a C-terminal MHD and has been classified into this family as well. It is an endophilin-interacting protein that plays an obligatory role in the regulation of energy homeostasis. It is also involved in clathrin-mediated endocytosis by interacting with phospholipids and eps15.


The actual alignment was detected with superfamily member cd09256:

Pssm-ID: 472082  Cd Length: 276  Bit Score: 83.20  E-value: 1.52e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15341962 196 PAWKTGTYKGKPQVSISITEKVKSMQYDKQGIADTWQVVGTVTCKV 241
Cdd:cd09256   1 PAWKPVLLKGKQQLSFKIRETVRAAQYDRDDISDVWSVFGEVRCKA 46
 
Name Accession Description Interval E-value
AP_MuD_MHD cd09256
Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, ...
196-241 1.52e-18

Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG); This family corresponds to the MHD found in a protein encoded by MuD (also known as Adapter-related protein complex 5 subunit mu-1), which is distantly related to the C-terminal domain of the mu2 subunit of AP complexes that participates in clathrin-mediated endocytosis. MuD is evolutionary conserved from mammals to amphibians. It is able to induce cell death by itself and plays an important role in cell death in various tissues.


Pssm-ID: 271164  Cd Length: 276  Bit Score: 83.20  E-value: 1.52e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15341962 196 PAWKTGTYKGKPQVSISITEKVKSMQYDKQGIADTWQVVGTVTCKV 241
Cdd:cd09256   1 PAWKPVLLKGKQQLSFKIRETVRAAQYDRDDISDVWSVFGEVRCKA 46
Adap_comp_sub pfam00928
Adaptor complexes medium subunit family; This family also contains members which are coatomer ...
196-264 1.92e-06

Adaptor complexes medium subunit family; This family also contains members which are coatomer subunits.


Pssm-ID: 395742  Cd Length: 259  Bit Score: 48.07  E-value: 1.92e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15341962   196 PAWKT-GTYKGKPQVSISITEKVKSMqYDKQGIADTWQVVGTVTCKVrFFSGTCFI-------VLFNIWRKVKFASC 264
Cdd:pfam00928   1 VPWRPpGIKYKKNEVFLDVIERVSVI-VDKDGGLLNSEVQGTIDLKC-FLSGMPELrlglndkLLLIELDDVSFHQC 75
 
Name Accession Description Interval E-value
AP_MuD_MHD cd09256
Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, ...
196-241 1.52e-18

Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG); This family corresponds to the MHD found in a protein encoded by MuD (also known as Adapter-related protein complex 5 subunit mu-1), which is distantly related to the C-terminal domain of the mu2 subunit of AP complexes that participates in clathrin-mediated endocytosis. MuD is evolutionary conserved from mammals to amphibians. It is able to induce cell death by itself and plays an important role in cell death in various tissues.


Pssm-ID: 271164  Cd Length: 276  Bit Score: 83.20  E-value: 1.52e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15341962 196 PAWKTGTYKGKPQVSISITEKVKSMQYDKQGIADTWQVVGTVTCKV 241
Cdd:cd09256   1 PAWKPVLLKGKQQLSFKIRETVRAAQYDRDDISDVWSVFGEVRCKA 46
Adap_comp_sub pfam00928
Adaptor complexes medium subunit family; This family also contains members which are coatomer ...
196-264 1.92e-06

Adaptor complexes medium subunit family; This family also contains members which are coatomer subunits.


Pssm-ID: 395742  Cd Length: 259  Bit Score: 48.07  E-value: 1.92e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15341962   196 PAWKT-GTYKGKPQVSISITEKVKSMqYDKQGIADTWQVVGTVTCKVrFFSGTCFI-------VLFNIWRKVKFASC 264
Cdd:pfam00928   1 VPWRPpGIKYKKNEVFLDVIERVSVI-VDKDGGLLNSEVQGTIDLKC-FLSGMPELrlglndkLLLIELDDVSFHQC 75
AP_MHD_Cterm cd07954
C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD); ...
208-267 1.25e-05

C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD); This family corresponds to the C-terminal domain of heterotetrameric AP complexes medium mu subunits and its homologs existing in monomeric stonins, delta-subunit of the heteroheptameric coat protein I (delta-COPI), a protein encoded by a pro-death gene referred as MuD (also known as MUDENG, mu-2 related death-inducing gene), an endocytic adaptor syp1, the mammalian FCH domain only proteins (FCHo1/2), SH3-containing GRB2-like protein 3-interacting protein 1 (SGIP1), and related proteins. AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. Stonins have been characterized as clathrin-dependent AP-2 mu chain related factors and may act as cargo-specific sorting adaptors in endocytosis. Coat protein complex I (COPI)-coated vesicles function in the early secretory pathway. They mediate the retrograde transport from the Golgi to the ER, and intra-Golgi transport. MuD is distantly related to the C-terminal domain of mu2 subunit of AP-2. It is able to induce cell death by itself and plays an important role in cell death in various tissues. Syp1 represents a novel type of endocytic adaptor protein that participates in endocytosis, promotes vesicle tabulation, and contributes to cell polarity and stress responses. It shares the same domain architecture with its two ubiquitously expressed mammalian counterparts, FCHo1/2, which represent key initial proteins ultimately controlling cellular nutrient uptake, receptor regulation, and synaptic vesicle retrieval. They bind specifically to the plasma membrane and recruit the scaffold proteins eps15 and intersectin, which subsequently engage the adaptor complex AP2 and clathrin, leading to coated vesicle formation. Another mammalian neuronal-specific protein SGIP1 does have a C-terminal MHD and has been classified into this family as well. It is an endophilin-interacting protein that plays an obligatory role in the regulation of energy homeostasis. It is also involved in clathrin-mediated endocytosis by interacting with phospholipids and eps15.


Pssm-ID: 271157  Cd Length: 245  Bit Score: 45.47  E-value: 1.25e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15341962 208 QVSISITEKVKSMQYdKQGIADTWQVVGTVTCKVrFFSG--TCFIVLFNIWRKVKFASCILN 267
Cdd:cd07954   1 EVFLDVVEKVNLLIS-KDGSLLNSEVQGEIALKS-FLSGmpEIRLGLNNPDVGIKLDDVSFH 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH