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Conserved domains on  [gi|46255661|gb|AAH08772|]
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DNAJC11 protein, partial [Homo sapiens]

Protein Classification

J domain-containing protein( domain architecture ID 10446376)

J domain-containing protein similar to Homo sapiens DnaJ homolog subfamily C member 11

CATH:  1.10.287.110
Gene Ontology:  GO:0006457
PubMed:  35729039|9644977|8016869|15170475
SCOP:  4000605

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaJ-like_C11_C pfam11875
DnaJ-like protein C11, C-terminal; This is the C-terminal domain found in DnaJ-like proteins, ...
 412-551 1.71e-65

DnaJ-like protein C11, C-terminal; This is the C-terminal domain found in DnaJ-like proteins, including DnaJ homolog subfamily C member 11 (DNAJC11) from mammals and Chaperone protein dnaJ 13 from Arabidopsis. DNAJC11 is a mitochondrial outer membrane protein involved in mitochondrial biogenesis and in the response to microenvironment changes and requirements. The J-domain is mediated its mitochondrial localization, while this domain is critical for protein-protein interactions.


:

Pssm-ID: 463378  Cd Length: 144  Bit Score: 209.75  E-value: 1.71e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   412 PYLRAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDK---SRKSEKVKVI 488
Cdd:pfam11875   1 PRKRRRKKRKLEELREKNKERIAEKRREAEAAIELMKETAERKRAAEEEKGGLVITKALYGNLPAFPdeeSDDDLEPEVI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46255661   489 DVTVPLQCLVKDSKLILTEA-SKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMVLDSEALRIP 551
Cdd:pfam11875  81 DVTIPLQALVKDSQLILPEGvSKSGLPGFYDPCPGEPKSLRVRYTFRGQLHEVEVDDNEELRLP 144
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 16-81 2.80e-25

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 98.70  E-value: 2.80e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 46255661    16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNLVHQAYEVLSDPQTRAIYD 81
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG---DPEAEEKFKEINEAYEVLSDPEKRAIYD 63
 
Name Accession Description Interval E-value
DnaJ-like_C11_C pfam11875
DnaJ-like protein C11, C-terminal; This is the C-terminal domain found in DnaJ-like proteins, ...
 412-551 1.71e-65

DnaJ-like protein C11, C-terminal; This is the C-terminal domain found in DnaJ-like proteins, including DnaJ homolog subfamily C member 11 (DNAJC11) from mammals and Chaperone protein dnaJ 13 from Arabidopsis. DNAJC11 is a mitochondrial outer membrane protein involved in mitochondrial biogenesis and in the response to microenvironment changes and requirements. The J-domain is mediated its mitochondrial localization, while this domain is critical for protein-protein interactions.


Pssm-ID: 463378  Cd Length: 144  Bit Score: 209.75  E-value: 1.71e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   412 PYLRAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDK---SRKSEKVKVI 488
Cdd:pfam11875   1 PRKRRRKKRKLEELREKNKERIAEKRREAEAAIELMKETAERKRAAEEEKGGLVITKALYGNLPAFPdeeSDDDLEPEVI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46255661   489 DVTVPLQCLVKDSKLILTEA-SKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMVLDSEALRIP 551
Cdd:pfam11875  81 DVTIPLQALVKDSQLILPEGvSKSGLPGFYDPCPGEPKSLRVRYTFRGQLHEVEVDDNEELRLP 144
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 16-81 2.80e-25

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 98.70  E-value: 2.80e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 46255661    16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNLVHQAYEVLSDPQTRAIYD 81
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG---DPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 16-89 8.81e-25

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 105.76  E-value: 8.81e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46255661    16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLE 89
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE----AEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 16-103 2.60e-24

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 98.62  E-value: 2.60e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661  16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEV 95
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDP---EAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLATEL 77


                ....*...
gi 46255661  96 VERRRTPA 103
Cdd:COG0484  78 AESAAAEA 85
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 16-92 1.11e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 102.92  E-value: 1.11e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDkhRDPELKSqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 92
Cdd:PRK10767   5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKE-AEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGG 78
DnaJ smart00271
DnaJ molecular chaperone homology domain;
15-75 1.04e-20

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 85.75  E-value: 1.04e-20
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 46255661     15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPelKSQAERLFNLVHQAYEVLSDPQ 75
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD--KEEAEEKFKEINEAYEVLSDPE 59
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 16-73 1.79e-20

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 84.90  E-value: 1.79e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 46255661  16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksQAERLFNLVHQAYEVLSD 73
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDP---EAEEKFKEINEAYEVLSD 55
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
16-92 1.54e-18

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 88.34  E-value: 1.54e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 92
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPD----AAEIFAEINEAYEVLSNPEKRANYDKYGHDGVDGEG 78
 
Name Accession Description Interval E-value
DnaJ-like_C11_C pfam11875
DnaJ-like protein C11, C-terminal; This is the C-terminal domain found in DnaJ-like proteins, ...
 412-551 1.71e-65

DnaJ-like protein C11, C-terminal; This is the C-terminal domain found in DnaJ-like proteins, including DnaJ homolog subfamily C member 11 (DNAJC11) from mammals and Chaperone protein dnaJ 13 from Arabidopsis. DNAJC11 is a mitochondrial outer membrane protein involved in mitochondrial biogenesis and in the response to microenvironment changes and requirements. The J-domain is mediated its mitochondrial localization, while this domain is critical for protein-protein interactions.


Pssm-ID: 463378  Cd Length: 144  Bit Score: 209.75  E-value: 1.71e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   412 PYLRAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDK---SRKSEKVKVI 488
Cdd:pfam11875   1 PRKRRRKKRKLEELREKNKERIAEKRREAEAAIELMKETAERKRAAEEEKGGLVITKALYGNLPAFPdeeSDDDLEPEVI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46255661   489 DVTVPLQCLVKDSKLILTEA-SKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMVLDSEALRIP 551
Cdd:pfam11875  81 DVTIPLQALVKDSQLILPEGvSKSGLPGFYDPCPGEPKSLRVRYTFRGQLHEVEVDDNEELRLP 144
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 16-81 2.80e-25

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 98.70  E-value: 2.80e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 46255661    16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNLVHQAYEVLSDPQTRAIYD 81
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG---DPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 16-89 8.81e-25

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 105.76  E-value: 8.81e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46255661    16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLE 89
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE----AEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 16-103 2.60e-24

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 98.62  E-value: 2.60e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661  16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEV 95
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDP---EAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLATEL 77


                ....*...
gi 46255661  96 VERRRTPA 103
Cdd:COG0484  78 AESAAAEA 85
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 16-92 1.11e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 102.92  E-value: 1.11e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDkhRDPELKSqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 92
Cdd:PRK10767   5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKE-AEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGG 78
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
13-81 9.59e-22

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 89.78  E-value: 9.59e-22
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 46255661  13 DNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDkhRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYD 81
Cdd:COG2214   3 DLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPD--RGGELKALAEELFQRLNEAYEVLSDPERRAEYD 69
DnaJ smart00271
DnaJ molecular chaperone homology domain;
15-75 1.04e-20

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 85.75  E-value: 1.04e-20
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 46255661     15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPelKSQAERLFNLVHQAYEVLSDPQ 75
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD--KEEAEEKFKEINEAYEVLSDPE 59
PRK14293 PRK14293
molecular chaperone DnaJ;
16-88 1.10e-20

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 93.90  E-value: 1.10e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPelksQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGL 88
Cdd:PRK14293   4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP----GAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 8-89 1.10e-20

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 94.50  E-value: 1.10e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661    8 SEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqaerLFNLVHQAYEVLSDPQTRAIYDIYGKRG 87
Cdd:PTZ00037  21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE-------KFKEISRAYEVLSDPEKRKIYDEYGEEG 93


                 ..
gi 46255661   88 LE 89
Cdd:PTZ00037  94 LE 95
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 16-93 1.31e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 93.68  E-value: 1.31e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDkhRDPELKsQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGW 93
Cdd:PRK14294   5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPD--RNPGDK-EAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGF 79
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 16-73 1.79e-20

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 84.90  E-value: 1.79e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 46255661  16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksQAERLFNLVHQAYEVLSD 73
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDP---EAEEKFKEINEAYEVLSD 55
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 15-87 1.59e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 90.62  E-value: 1.59e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46255661   15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHrdPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRG 87
Cdd:PRK14282   4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH--PENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 16-92 1.80e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 90.60  E-value: 1.80e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 92
Cdd:PRK14291   4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPE----AEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSG 76
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
16-92 1.54e-18

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 88.34  E-value: 1.54e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 92
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPD----AAEIFAEINEAYEVLSNPEKRANYDKYGHDGVDGEG 78
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 12-87 1.73e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 87.45  E-value: 1.73e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 46255661   12 LDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRG 87
Cdd:PRK14276   1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG----AEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 16-89 3.41e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 86.44  E-value: 3.41e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLE 89
Cdd:PRK14298   6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD----AEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 16-88 5.65e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 86.05  E-value: 5.65e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGL 88
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG---DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 15-94 9.68e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 83.83  E-value: 9.68e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEmEGWE 94
Cdd:PRK14299   4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPG----AEEKFKEINEAYTVLSDPEKRRIYDTYGTTAAS-AGWQ 78
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 13-92 3.24e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 83.70  E-value: 3.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   13 DNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKhrDPELKsQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 92
Cdd:PRK14277   3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDL--NPGDK-EAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGG 79
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 16-84 7.46e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 82.41  E-value: 7.46e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksQAERlFNLVHQAYEVLSDPQTRAIYDIYG 84
Cdd:PRK14278   4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEE---AQEK-FKEISVAYEVLSDPEKRRIVDLGG 68
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 15-84 1.53e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 81.52  E-value: 1.53e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHrdPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYG 84
Cdd:PRK14290   3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG 70
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 12-92 2.04e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 80.94  E-value: 2.04e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   12 LDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRD-PElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEM 90
Cdd:PRK14301   1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDnPE----AEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNG 76


                 ..
gi 46255661   91 EG 92
Cdd:PRK14301  77 NG 78
termin_org_DnaJ TIGR03835
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ...
 16-92 3.44e-16

terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274808 [Multi-domain]  Cd Length: 871  Bit Score: 82.17  E-value: 3.44e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46255661    16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 92
Cdd:TIGR03835   3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPD----AASIFAEINEANDVLSNPKKRANYDKYGHDGVDRED 75
PRK14297 PRK14297
molecular chaperone DnaJ;
14-84 8.85e-16

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 79.06  E-value: 8.85e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 46255661   14 NEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNLVHQAYEVLSDPQTRAIYDIYG 84
Cdd:PRK14297   3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG---NKEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 16-88 9.32e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 79.47  E-value: 9.32e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGL 88
Cdd:PRK14281   4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD---NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 16-84 1.07e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 78.78  E-value: 1.07e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPelksQAERLFNLVHQAYEVLSDPQTRAIYDIYG 84
Cdd:PRK14292   3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK----GAAEKFAQINEAYAVLSDAEKRAHYDRFG 67
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 12-88 1.79e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 78.11  E-value: 1.79e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46255661   12 LDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGL 88
Cdd:PRK14286   1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG---NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74
PRK14280 PRK14280
molecular chaperone DnaJ;
16-87 2.03e-15

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 78.22  E-value: 2.03e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRG 87
Cdd:PRK14280   5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG----ADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72
PRK14289 PRK14289
molecular chaperone DnaJ;
16-88 2.47e-15

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 77.95  E-value: 2.47e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46255661   16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKhrDPELKsQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGL 88
Cdd:PRK14289   6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDK--NPGDK-EAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 13-93 5.33e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 76.79  E-value: 5.33e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   13 DNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGleMEG 92
Cdd:PRK14283   3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEG----AEEKFKEISEAYAVLSDDEKRQRYDQFGHAG--MDG 76


                 .
gi 46255661   93 W 93
Cdd:PRK14283  77 F 77
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 12-84 3.20e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 74.28  E-value: 3.20e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46255661   12 LDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYG 84
Cdd:PRK14287   1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPD----AEDKFKEVKEAYDTLSDPQKKAHYDQFG 69
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 15-89 7.89e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 73.10  E-value: 7.89e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 46255661   15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLE 89
Cdd:PRK14285   3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK---EAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
12-79 3.53e-13

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 64.82  E-value: 3.53e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 46255661  12 LDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKH---RDPELKSQAERLFNLVHQAYEVLSDPQTRAI 79
Cdd:COG1076   1 MQLDDAFELLGLPPDADDAELKRAYRKLQREHHPDRLaagLPEEEQRLALQKAAAINEAYETLKDPRGIDL 71
PRK14288 PRK14288
molecular chaperone DnaJ;
17-92 4.70e-13

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 70.87  E-value: 4.70e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 46255661   17 YYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 92
Cdd:PRK14288   5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK---EAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAG 77
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 16-78 6.21e-13

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 63.48  E-value: 6.21e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46255661  16 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKhrdPELKSQAERLFNLVHQAYEVLSDPQTRA 78
Cdd:COG5407   1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDR---NKGDPKAEERFKEINEAYELLSDAEKRA 60
PRK10266 PRK10266
curved DNA-binding protein;
15-81 8.32e-13

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 69.46  E-value: 8.32e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46255661   15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYD 81
Cdd:PRK10266   4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD----AEARFKEVAEAWEVLSDEQRRAEYD 66
PRK14295 PRK14295
molecular chaperone DnaJ;
7-81 2.13e-12

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 68.72  E-value: 2.13e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 46255661    7 LSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNLVHQAYEVLSDPQTRAIYD 81
Cdd:PRK14295   1 MSTKDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG---DAKAEERFKEISEAYDVLSDEKKRKEYD 72
PRK14279 PRK14279
molecular chaperone DnaJ;
7-81 3.67e-12

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 68.22  E-value: 3.67e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 46255661    7 LSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHrdPELKSQAERlFNLVHQAYEVLSDPQTRAIYD 81
Cdd:PRK14279   1 MAQREWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN--PGDPAAEER-FKAVSEAHDVLSDPAKRKEYD 72
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 14-84 2.20e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 65.81  E-value: 2.20e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 46255661   14 NEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRdpelKSQAERLFNLVHQAYEVLSDPQTRAIYDIYG 84
Cdd:PRK14300   2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD----AKDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 15-84 1.17e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 60.35  E-value: 1.17e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46255661   15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPElksqAERLFNLVHQAYEVLSDPQTRAIYDIYG 84
Cdd:PRK14296   4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD----AHDKMVEINEAADVLLDKDKRKQYDQFG 69
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 16-81 5.48e-06

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 48.88  E-value: 5.48e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 46255661  16 DYYSLLNV---RREASSEELKAAYRRLCMLYHPDKHRDPELKSQAErLFNLVHQAYEVLSDPQTRAIYD 81
Cdd:COG5269  44 DLYALLGLskyRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDE-FFKLIQKAREVLGDRKLRLQYD 111
djlA PRK09430
co-chaperone DjlA;
15-47 1.92e-04

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 43.26  E-value: 1.92e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 46255661   15 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDK 47
Cdd:PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
hscB PRK03578
Fe-S protein assembly co-chaperone HscB;
14-80 2.26e-03

Fe-S protein assembly co-chaperone HscB;


Pssm-ID: 235133 [Multi-domain]  Cd Length: 176  Bit Score: 39.23  E-value: 2.26e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 46255661   14 NEDYYSL--LNVRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNL-----VHQAYEVLSDPQTRAIY 80
Cdd:PRK03578   5 KDDHFSLfgLPARFALDEAALDAAYRTVQAQVHPDRFAA---AGDAEKRVAMqwatrANEAYQTLRDPLKRARY 75
PHA03102 PHA03102
Small T antigen; Reviewed
 19-53 2.90e-03

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 38.50  E-value: 2.90e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 46255661   19 SLLNVRREA--SSEELKAAYRRLCMLYHPDKHRDPEL 53
Cdd:PHA03102   9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKGGDEEK 45
hscB PRK05014
co-chaperone HscB; Provisional
 16-80 5.20e-03

co-chaperone HscB; Provisional


Pssm-ID: 179914 [Multi-domain]  Cd Length: 171  Bit Score: 37.97  E-value: 5.20e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 46255661   16 DYYSLLN--VRREASSEELKAAYRRLCMLYHPDKHRDpelKSQAERLFNL-----VHQAYEVLSDPQTRAIY 80
Cdd:PRK05014   2 DYFTLFGlpARYDIDTQLLASRYQELQRQFHPDKFAN---ASERERLLAVqqaatINDAYQTLKHPLKRAEY 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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