NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|13529494|gb|AAH05470|]
View 

Ubiquitin specific peptidase 11 [Mus musculus]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 1000871)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0046872|GO:0003723

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
UBP12 super family cl35019
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
33-666 3.35e-128

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG5560:

Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 399.64  E-value: 3.35e-128
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  33 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKV 112
Cdd:COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 113 GHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVElcngagRPDL---------EVAQEAWQNHKRRNDSVIVDT 183
Cdd:COG5560 344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTS------KPDLspgddvvvkKKAKECWWEHLKRNDSIITDL 417
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 184 FHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQhrVVVPKKGNISDLCVALSTHTSVAP 263
Cdd:COG5560 418 FQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLK--IELDASSTIRGLKKLVDAEYGKLG 495
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 264 -DKMIVADVFSHRFYK-LYQLEDPLS-GILDRDDIFVYEVTGriepvegsrDDIVVPVYlreRTPSrdyNNSYYGLILFG 340
Cdd:COG5560 496 cFEIKVMCIYYGGNYNmLEPADKVLLqDIPQTDFVYLYETND---------NGIEVPVV---HLRI---EKGYKSKRLFG 560
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 341 HPLLVSVPRDRFSwegLYNILMyrlsryvtkptsdeddgdekvdedededveddssseeekeemsaptvndgtREAEQEQ 420
Cdd:COG5560 561 DPFLQLNVLIKAS---IYDKLV---------------------------------------------------KEFEELL 586
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 421 AGTSSGVTERCPSLLDNSLRasqwppRRRRKQLFTLQTVNsngtsDRTTSPEEMQTQPYIAMDWEPDMKRRYYDEVEAEG 500
Cdd:COG5560 587 VLVEMKKTDVDLVSEQVRLL------REESSPSSWLKLET-----EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLS 655
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 501 YVKHDCVGYMLK----KSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISRE 576
Cdd:COG5560 656 LFSYDPLWTIREigaaERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 577 KLDTLVQFPIRDLDFSEFVIKPKNessPDLYkYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQIES 656
Cdd:COG5560 736 KIDDLVEYPIDDLDLSGVEYMVDD---PRLI-YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVT 811
                       650
                ....*....|
gi 13529494 657 KAAYVLFYQR 666
Cdd:COG5560 812 SSAYVLFYRR 821
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
33-666 3.35e-128

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 399.64  E-value: 3.35e-128
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  33 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKV 112
Cdd:COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 113 GHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVElcngagRPDL---------EVAQEAWQNHKRRNDSVIVDT 183
Cdd:COG5560 344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTS------KPDLspgddvvvkKKAKECWWEHLKRNDSIITDL 417
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 184 FHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQhrVVVPKKGNISDLCVALSTHTSVAP 263
Cdd:COG5560 418 FQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLK--IELDASSTIRGLKKLVDAEYGKLG 495
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 264 -DKMIVADVFSHRFYK-LYQLEDPLS-GILDRDDIFVYEVTGriepvegsrDDIVVPVYlreRTPSrdyNNSYYGLILFG 340
Cdd:COG5560 496 cFEIKVMCIYYGGNYNmLEPADKVLLqDIPQTDFVYLYETND---------NGIEVPVV---HLRI---EKGYKSKRLFG 560
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 341 HPLLVSVPRDRFSwegLYNILMyrlsryvtkptsdeddgdekvdedededveddssseeekeemsaptvndgtREAEQEQ 420
Cdd:COG5560 561 DPFLQLNVLIKAS---IYDKLV---------------------------------------------------KEFEELL 586
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 421 AGTSSGVTERCPSLLDNSLRasqwppRRRRKQLFTLQTVNsngtsDRTTSPEEMQTQPYIAMDWEPDMKRRYYDEVEAEG 500
Cdd:COG5560 587 VLVEMKKTDVDLVSEQVRLL------REESSPSSWLKLET-----EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLS 655
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 501 YVKHDCVGYMLK----KSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISRE 576
Cdd:COG5560 656 LFSYDPLWTIREigaaERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 577 KLDTLVQFPIRDLDFSEFVIKPKNessPDLYkYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQIES 656
Cdd:COG5560 736 KIDDLVEYPIDDLDLSGVEYMVDD---PRLI-YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVT 811
                       650
                ....*....|
gi 13529494 657 KAAYVLFYQR 666
Cdd:COG5560 812 SSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
515-665 9.88e-57

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 192.50  E-value: 9.88e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 515 PVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEF 594
Cdd:cd02674  83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY 162
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 13529494 595 VIkpkNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQIESKAAYVLFYQ 665
Cdd:cd02674 163 VD---TRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
505-664 4.01e-55

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 191.12  E-value: 4.01e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494   505 DCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQF 584
Cdd:pfam00443 151 PIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEF 230
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494   585 PiRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPV-NENQIESKAAYVLF 663
Cdd:pfam00443 231 P-LELDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVdEETAVLSSSAYILF 309

                  .
gi 13529494   664 Y 664
Cdd:pfam00443 310 Y 310
 
Name Accession Description Interval E-value
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
33-666 3.35e-128

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 399.64  E-value: 3.35e-128
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  33 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKV 112
Cdd:COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 113 GHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVElcngagRPDL---------EVAQEAWQNHKRRNDSVIVDT 183
Cdd:COG5560 344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTS------KPDLspgddvvvkKKAKECWWEHLKRNDSIITDL 417
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 184 FHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQhrVVVPKKGNISDLCVALSTHTSVAP 263
Cdd:COG5560 418 FQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLK--IELDASSTIRGLKKLVDAEYGKLG 495
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 264 -DKMIVADVFSHRFYK-LYQLEDPLS-GILDRDDIFVYEVTGriepvegsrDDIVVPVYlreRTPSrdyNNSYYGLILFG 340
Cdd:COG5560 496 cFEIKVMCIYYGGNYNmLEPADKVLLqDIPQTDFVYLYETND---------NGIEVPVV---HLRI---EKGYKSKRLFG 560
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 341 HPLLVSVPRDRFSwegLYNILMyrlsryvtkptsdeddgdekvdedededveddssseeekeemsaptvndgtREAEQEQ 420
Cdd:COG5560 561 DPFLQLNVLIKAS---IYDKLV---------------------------------------------------KEFEELL 586
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 421 AGTSSGVTERCPSLLDNSLRasqwppRRRRKQLFTLQTVNsngtsDRTTSPEEMQTQPYIAMDWEPDMKRRYYDEVEAEG 500
Cdd:COG5560 587 VLVEMKKTDVDLVSEQVRLL------REESSPSSWLKLET-----EIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLS 655
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 501 YVKHDCVGYMLK----KSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISRE 576
Cdd:COG5560 656 LFSYDPLWTIREigaaERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 577 KLDTLVQFPIRDLDFSEFVIKPKNessPDLYkYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQIES 656
Cdd:COG5560 736 KIDDLVEYPIDDLDLSGVEYMVDD---PRLI-YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVT 811
                       650
                ....*....|
gi 13529494 657 KAAYVLFYQR 666
Cdd:COG5560 812 SSAYVLFYRR 821
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
515-665 9.88e-57

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 192.50  E-value: 9.88e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 515 PVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEF 594
Cdd:cd02674  83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY 162
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 13529494 595 VIkpkNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQIESKAAYVLFYQ 665
Cdd:cd02674 163 VD---TRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
505-664 4.01e-55

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 191.12  E-value: 4.01e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494   505 DCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQF 584
Cdd:pfam00443 151 PIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEF 230
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494   585 PiRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPV-NENQIESKAAYVLF 663
Cdd:pfam00443 231 P-LELDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVdEETAVLSSSAYILF 309

                  .
gi 13529494   664 Y 664
Cdd:pfam00443 310 Y 310
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
35-215 1.67e-48

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 173.01  E-value: 1.67e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494    35 CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNnryLEELNFRNPLGMKGELAEAYADLVKQTWSG-YHRSIVPNVFKNKVG 113
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLR---ISPLSEDSRYNKDINLLCALRDLFKALQKNsKSSSVSPKMFKKSLG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494   114 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRvkkkeyvelcngagrpdlevaqeawqNHKRRNDSVIVDTFHGLFKSTLV 193
Cdd:pfam00443  78 KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG--------------------------NHSTENESLITDLFRGQLKSRLK 131
                         170       180
                  ....*....|....*....|..
gi 13529494   194 CPDCGNVSVTFDPFCYLSVPLP 215
Cdd:pfam00443 132 CLSCGEVSETFEPFSDLSLPIP 153
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
518-665 3.34e-39

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 145.32  E-value: 3.34e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 518 LKECIKLFTTVETLEKENPWYCSsCKQHQLATKKLDLWMLPEVLIIHLKRFSF-SKISREKLDTLVQFPIRdLDFSEFVI 596
Cdd:cd02257 101 LEDCLEKFFKEEILEGDNCYKCE-KKKKQEATKRLKIKKLPPVLIIHLKRFSFnEDGTKEKLNTKVSFPLE-LDLSPYLS 178
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 13529494 597 KPKNESSPDL--YKYDLIAVSNHYGGMRD-GHYTTFACNKDSGQWHYLDDNSVSPVNENQIE-----SKAAYVLFYQ 665
Cdd:cd02257 179 EGEKDSDSDNgsYKYELVAVVVHSGTSADsGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
518-664 1.22e-30

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 122.38  E-value: 1.22e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 518 LKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFskISREKLDTLVQFPIRdLDFSEFVIK 597
Cdd:cd02661 164 LEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSN--FRGGKINKQISFPET-LDLSPYMSQ 240
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 13529494 598 PKNESspdlYKYDLIAVSNHYGG-MRDGHYTTFACNkDSGQWHYLDDNSVSPVNENQIESKAAYVLFY 664
Cdd:cd02661 241 PNDGP----LKYKLYAVLVHSGFsPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
518-664 6.13e-29

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 117.86  E-value: 6.13e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 518 LKECIKLFTTVETLEkENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKI-SREKLDTLVQFPIRdLDFSEFV- 595
Cdd:cd02660 178 LSDCLDRFTRPEKLG-DFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNkTSRKIDTYVQFPLE-LNMTPYTs 255
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 13529494 596 -----IKPKNESSPDlYKYDLIAVSNHYGGMRDGHYTTFaCNKDSGQWHYLDDNSVSPVNENQIESKAAYVLFY 664
Cdd:cd02660 256 ssigdTQDSNSLDPD-YTYDLFAVVVHKGTLDTGHYTAY-CRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
513-665 2.88e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 109.01  E-value: 2.88e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 513 KSPVQLKECIKLFTTVETLEKENPWYCSSCKQhqlATKKLDLWMLPEVLIIHLKRF------SFSKISREkldtlVQFPI 586
Cdd:cd02667 108 KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFqqprsaNLRKVSRH-----VSFPE 179
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 587 RdLDFSEFViKPKNESSPDLYK--YDLIAVSNHYGGMRDGHYTTFA---------------------CNKDSGQWHYLDD 643
Cdd:cd02667 180 I-LDLAPFC-DPKCNSSEDKSSvlYRLYGVVEHSGTMRSGHYVAYVkvrppqqrlsdltkskpaadeAGPGSGQWYYISD 257
                       170       180
                ....*....|....*....|..
gi 13529494 644 NSVSPVNENQIESKAAYVLFYQ 665
Cdd:cd02667 258 SDVREVSLEEVLKSEAYLLFYE 279
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
518-668 2.63e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 107.34  E-value: 2.63e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 518 LKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFS--KISREKLDTLVQFPIRdLDFSEFV 595
Cdd:cd02659 153 LEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDfeTMMRIKINDRFEFPLE-LDMEPYT 231
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 596 ---IKPKNESSPDL----YKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQIESK----------- 657
Cdd:cd02659 232 ekgLAKKEGDSEKKdsesYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEEcfggeetqkty 311
                       170       180
                ....*....|....*....|..
gi 13529494 658 -----------AAYVLFYQRQD 668
Cdd:cd02659 312 dsgprafkrttNAYMLFYERKS 333
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
36-215 3.82e-23

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 98.51  E-value: 3.82e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLSNvpqlteyflnnryleelnfrnplgmkgelaeayadlvkqtwsgyhrsivpnvfknkvghf 115
Cdd:cd02674   1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 116 asqflgyQQHDSQELLSFLLDGLHedlnrvkkkeyvelcngagrpdlevaqeawqnhkrrndSVIVDTFHGLFKSTLVCP 195
Cdd:cd02674  21 -------DQQDAQEFLLFLLDGLH--------------------------------------SIIVDLFQGQLKSRLTCL 55
                       170       180
                ....*....|....*....|
gi 13529494 196 DCGNVSVTFDPFCYLSVPLP 215
Cdd:cd02674  56 TCGKTSTTFEPFTYLSLPIP 75
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
36-220 2.29e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 98.60  E-value: 2.29e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKG-ELAEAYADLvkqTWSGYHRSIVPNVFKNKVGH 114
Cdd:cd02660   2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLScAMDEIFQEF---YYSGDRSPYGPINLLYLSWK 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 115 FASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEY-VELCNgagrpdlevaqeawqnhkrrndsVIVD-TFHGLFKSTL 192
Cdd:cd02660  79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANdESHCN-----------------------CIIHqTFSGSLQSSV 135
                       170       180
                ....*....|....*....|....*...
gi 13529494 193 VCPDCGNVSVTFDPFCYLSVPLPVCSRR 220
Cdd:cd02660 136 TCQRCGGVSTTVDPFLDLSLDIPNKSTP 163
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
35-212 7.10e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 96.58  E-value: 7.10e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  35 CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKgelaeAYADLVKQTWSGYHRSIVPNVFKNKVGH 114
Cdd:cd02661   2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMC-----ALEAHVERALASSGPGSAPRIFSSNLKQ 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 115 FASQFLGYQQHDSQELLSFLLDGLHED-LNRVKKKEYVelcngagrpdlevaqeawqNHKRRNDSVIVDTFHGLFKSTLV 193
Cdd:cd02661  77 ISKHFRIGRQEDAHEFLRYLLDAMQKAcLDRFKKLKAV-------------------DPSSQETTLVQQIFGGYLRSQVK 137
                       170
                ....*....|....*....
gi 13529494 194 CPDCGNVSVTFDPFCYLSV 212
Cdd:cd02661 138 CLNCKHVSNTYDPFLDLSL 156
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
517-664 1.26e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 93.64  E-value: 1.26e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 517 QLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKIS--REKLDTLVQFPiRDLDFSEF 594
Cdd:cd02668 157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTgaKKKLNASISFP-EILDMGEY 235
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 595 VIkpknESSPDLYKYDLIAVSNHYG-GMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQIE------------------ 655
Cdd:cd02668 236 LA----ESDEGSYVYELSGVLIHQGvSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKlgnsedpakprkseikkg 311
                       170
                ....*....|..
gi 13529494 656 ---SKAAYVLFY 664
Cdd:cd02668 312 thsSRTAYMLVY 323
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
36-216 1.84e-20

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 91.39  E-value: 1.84e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLSNvpqlteyflnnryleelnfrnplgmkgelaeayadlvkqtwsgyhrsivpnvfknkvghf 115
Cdd:cd02257   1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 116 asqflgyQQHDSQELLSFLLDGLHEDLNRVKKKEyvelcngagrpdlevaqeawqNHKRRNDSVIVDTFHGLFKSTLVCP 195
Cdd:cd02257  21 -------EQQDAHEFLLFLLDKLHEELKKSSKRT---------------------SDSSSLKSLIHDLFGGKLESTIVCL 72
                       170       180
                ....*....|....*....|.
gi 13529494 196 DCGNVSVTFDPFCYLSVPLPV 216
Cdd:cd02257  73 ECGHESVSTEPELFLSLPLPV 93
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
518-665 2.23e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 92.37  E-value: 2.23e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 518 LKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFS-KISR-EKLDTLVQFPirdldfSEFV 595
Cdd:cd02663 149 ITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDeQLNRyIKLFYRVVFP------LELR 222
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 596 IKPKNESSPDLYK-YDLIAVSNHYGG--MRdGHYTTFAcnKDSGQWHYLDDNSVSPVNENQIE--------SKAAYVLFY 664
Cdd:cd02663 223 LFNTTDDAENPDRlYELVAVVVHIGGgpNH-GHYVSIV--KSHGGWLLFDDETVEKIDENAVEeffgdspnQATAYVLFY 299

                .
gi 13529494 665 Q 665
Cdd:cd02663 300 Q 300
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
36-218 1.36e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 86.67  E-value: 1.36e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLSNVPQLTEYFLnnryleelnfRNPLGMKGELAeayadlvkqtwsgyhrsivpnvfknkvgHF 115
Cdd:cd02667   1 GLSNLGNTCFFNAVMQNLSQTPALRELLS----------ETPKELFSQVC----------------------------RK 42
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 116 ASQFLGYQQHDSQELLSFLLDGLhedlnrvkkkeyvelcngagrpdlevaqeawqnhkrrnDSVIVDTFHGLFKSTLVCP 195
Cdd:cd02667  43 APQFKGYQQQDSHELLRYLLDGL--------------------------------------RTFIDSIFGGELTSTIMCE 84
                       170       180
                ....*....|....*....|...
gi 13529494 196 DCGNVSVTFDPFCYLSVPLPVCS 218
Cdd:cd02667  85 SCGTVSLVYEPFLDLSLPRSDEI 107
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
557-665 8.98e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 76.97  E-value: 8.98e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 557 LPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLyKYDLIAVSNHYGG-MRDGHYTTFACNKDS 635
Cdd:cd02669 332 LPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLST-KYNLVANIVHEGTpQEDGTWRVQLRHKST 410
                        90       100       110
                ....*....|....*....|....*....|
gi 13529494 636 GQWHYLDDNSVSPVNENQIESKAAYVLFYQ 665
Cdd:cd02669 411 NKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
532-666 1.57e-14

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 74.45  E-value: 1.57e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 532 EKENPWYCSSCKQHQLATKKldlwMLPEVLIIHLKRFSfSKISREKLDTLVQFPIrDLDFSefvIKPKNESSPDLYkYDL 611
Cdd:COG5533 158 AKENEELEVQAKQEYEVSFV----KLPKILTIQLKRFA-NLGGNQKIDTEVDEKF-ELPVK---HDQILNIVKETY-YDL 227
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 13529494 612 IAVSNHYGGMRDGHYTtfACNKDSGQWHYLDDNSVSPVNENQIE---SKAAYVLFYQR 666
Cdd:COG5533 228 VGFVLHQGSLEGGHYI--AYVKKGGKWEKANDSDVTPVSEEEAInekAKNAYLYFYER 283
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
522-665 6.38e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 73.29  E-value: 6.38e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 522 IKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKIS--REKL------DTLVQFPIRD-LDFS 592
Cdd:cd02664 140 LNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKThvREKImdnvsiNEVLSLPVRVeSKSS 219
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 593 EFVIKPKNESSPD-------LYKYDLIAVSNHYG-GMRDGHYTTFA--------------------CNKDSGQWHYLDDN 644
Cdd:cd02664 220 ESPLEKKEEESGDdgelvtrQVHYRLYAVVVHSGySSESGHYFTYArdqtdadstgqecpepkdaeENDESKNWYLFNDS 299
                       170       180
                ....*....|....*....|....*...
gi 13529494 645 SVSPVNENQIE-------SKAAYVLFYQ 665
Cdd:cd02664 300 RVTFSSFESVQnvtsrfpKDTPYILFYE 327
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
511-665 7.61e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 73.13  E-value: 7.61e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 511 LKKSPVQLKECIKLFTTVETLEkenpWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISRE-KLDTLVQFPirdl 589
Cdd:cd02658 173 LVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPkKLDVPIDVP---- 244
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 590 dfseFVIKPKnesspdlyKYDLIAVSNHYG-GMRDGHYTTFacNK----DSGQWHYLDDNSVSPVNENQIESKAAYVLFY 664
Cdd:cd02658 245 ----EELGPG--------KYELIAFISHKGtSVHSGHYVAH--IKkeidGEGKWVLFNDEKVVASQDPPEMKKLGYIYFY 310

                .
gi 13529494 665 Q 665
Cdd:cd02658 311 Q 311
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
36-216 6.73e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 70.05  E-value: 6.73e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLSNVPQLTE---YFLNNRYLEELNFRNPLgmkGELAEAYADLvkqtwSGYHRSIVPNVFKNKV 112
Cdd:cd02657   1 GLTNLGNTCYLNSTLQCLRSVPELRDalkNYNPARRGANQSSDNLT---NALRDLFDTM-----DKKQEPVPPIEFLQLL 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 113 GHFASQFL------GYQQHDSQELLSFLLDGLHEDLNRVKKKeyvelcngagrpdlevaqeawqnhkrrnDSVIVDTFHG 186
Cdd:cd02657  73 RMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSK----------------------------GSFIDQLFGI 124
                       170       180       190
                ....*....|....*....|....*....|....*
gi 13529494 187 LFKSTLVCPDCGNV-SVTFDPF----CYLSVPLPV 216
Cdd:cd02657 125 ELETKMKCTESPDEeEVSTESEyklqCHISITTEV 159
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
518-664 2.40e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 68.77  E-value: 2.40e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 518 LKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISR------EKLDTLVQFPIrDLDF 591
Cdd:cd02671 182 LKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFdcygglSKVNTPLLTPL-KLSL 260
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 592 SEFVIKPKNESspdlykYDLIAVSNHYGG-MRDGHYTTFACnkdsgqWHYLDDNSVSPVNENQIE---------SKAAYV 661
Cdd:cd02671 261 EEWSTKPKNDV------YRLFAVVMHSGAtISSGHYTAYVR------WLLFDDSEVKVTEEKDFLealspntssTSTPYL 328

                ...
gi 13529494 662 LFY 664
Cdd:cd02671 329 LFY 331
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
557-664 4.53e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 67.36  E-value: 4.53e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 557 LPEVLIIHLKRFSFSKISREKLDTL--VQFPIrDLDFSEFVikpknesSPDLYkYDLIAVSNHYGGMRD-GHYTTFACNK 633
Cdd:cd02657 196 LPKYLTVQFVRFFWKRDIQKKAKILrkVKFPF-ELDLYELC-------TPSGY-YELVAVITHQGRSADsGHYVAWVRRK 266
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 13529494 634 DSGQWHYLDDNSVSPVNENQIESKA-------AYVLFY 664
Cdd:cd02657 267 NDGKWIKFDDDKVSEVTEEDILKLSgggdwhiAYILLY 304
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
518-665 2.08e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 64.31  E-value: 2.08e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 518 LKECIKLFTTVETLEKENpwyCSSCkqhQLATKKLdlwmlPEVLIIHLKRFSFS-KISREKLDTLVQFPirdldfsEFVI 596
Cdd:cd02662  98 LEHCLDDFLSTEIIDDYK---CDRC---QTVIVRL-----PQILCIHLSRSVFDgRGTSTKNSCKVSFP-------ERLP 159
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 597 KpknesspdlYKYDLIAVSNHYGGMRDGHYTTF--------------------ACNKDSGQWHYLDDNSVSPVNENQI-E 655
Cdd:cd02662 160 K---------VLYRLRAVVVHYGSHSSGHYVCYrrkplfskdkepgsfvrmreGPSSTSHPWWRISDTTVKEVSESEVlE 230
                       170
                ....*....|
gi 13529494 656 SKAAYVLFYQ 665
Cdd:cd02662 231 QKSAYMLFYE 240
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
36-215 4.55e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 64.65  E-value: 4.55e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNP----------LGmKGELAEAYA--DLVKQTWSGYHRSI 103
Cdd:cd02658   1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPandlncqlikLA-DGLLSGRYSkpASLKSENDPYQVGI 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 104 VPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDglhedlnrvkkkeyvelcngagrpdlEVAQEAWQNHKRRndsvIVDT 183
Cdd:cd02658  80 KPSMFKALIGKGHPEFSTMRQQDALEFLLHLID--------------------------KLDRESFKNLGLN----PNDL 129
                       170       180       190
                ....*....|....*....|....*....|..
gi 13529494 184 FHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLP 215
Cdd:cd02658 130 FKFMIEDRLECLSCKKVKYTSELSEILSLPVP 161
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
32-148 2.86e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 63.11  E-value: 2.86e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  32 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRyleelNFRNPLGMKGELAEAYADLVKQTWSgyhrsivPNVFKNK 111
Cdd:cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYE-----NYENIKDRKSELVKRLSELIRKIWN-------PRNFKGH 184
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 13529494 112 VG-HfasQFLGY------------QQHDSQELLSFLLDGLHEDLNRVKKK 148
Cdd:cd02669 185 VSpH---ELLQAvskvskkkfsitEQSDPVEFLSWLLNTLHKDLGGSKKP 231
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
36-215 1.01e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 57.32  E-value: 1.01e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLsnvpqlteYFLNnryleelnfrnplgmkgeLAEAYADLVKQTWSGYHRS--IVPNVFKNKVG 113
Cdd:cd02663   1 GLENFGNTCYCNSVLQAL--------YFEN------------------LLTCLKDLFESISEQKKRTgvISPKKFITRLK 54
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 114 HFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEyvelcngagrpdLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLV 193
Cdd:cd02663  55 RENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAE------------KANRKLNNNNNAEPQPTWVHEIFQGILTNETR 122
                       170       180
                ....*....|....*....|..
gi 13529494 194 CPDCGNVSVTFDPFCYLSVPLP 215
Cdd:cd02663 123 CLTCETVSSRDETFLDLSIDVE 144
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
518-654 1.10e-08

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 58.73  E-value: 1.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  518 LKECIKLFTTVETLEKENPWYCsscKQHQL--ATKKLDLWMLPEVLIIHLKRFS--FSKISREKLDTLVQFPIrDLDFSE 593
Cdd:COG5077  340 LQESFRRYIQVETLDGDNRYNA---EKHGLqdAKKGVIFESLPPVLHLQLKRFEydFERDMMVKINDRYEFPL-EIDLLP 415
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 13529494  594 FVIKPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYLDDNSVSPVNENQI 654
Cdd:COG5077  416 FLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEV 476
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
525-664 1.57e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 56.00  E-value: 1.57e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 525 FTTVETLEKEnpwyCSSCKqHQLATKKLDLWMLPEVLIIHLKRFSFSKISREkldtlvqfpirDLDFSEFVIKpKNESSP 604
Cdd:cd02673 119 FKTWSPIEKD----CSSCK-CESAISSERIMTFPECLSINLKRYKLRIATSD-----------YLKKNEEIMK-KYCGTD 181
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13529494 605 DlyKYDLIAVSNHYG-GMRDGHYTTFACNKDSG-QWHYLDDNSVSPVNENQIE---SKAAYVLFY 664
Cdd:cd02673 182 A--KYSLVAVICHLGeSPYDGHYIAYTKELYNGsSWLYCSDDEIRPVSKNDVStnaRSSGYLIFY 244
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
36-142 2.82e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 55.58  E-value: 2.82e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLS-NVPQLTEYFLNNR-----YLEELNFRNPLgMKGELAEAyadLVKQTWSgyhrsivpnvfk 109
Cdd:COG5533   1 GLPNLGNTCFMNSVLQILAlYLPKLDELLDDLSkelkvLKNVIRKPEPD-LNQEEALK---LFTALWS------------ 64
                        90       100       110
                ....*....|....*....|....*....|...
gi 13529494 110 NKVGHFASQFLGYQQHDSQELLSFLLDGLHEDL 142
Cdd:COG5533  65 SKEHKVGWIPPMGSQEDAHELLGKLLDELKLDL 97
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
33-212 5.41e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 55.34  E-value: 5.41e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  33 GICGLTNLGNTCFMNSALQCLSNVPqlteYFLNNRYLEELNFRNPlGMKGELAeAYADLVKQTWSGYHRSIVPNVFkNKV 112
Cdd:cd02659   1 GYVGLKNQGATCYMNSLLQQLYMTP----EFRNAVYSIPPTEDDD-DNKSVPL-ALQRLFLFLQLSESPVKTTELT-DKT 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 113 GHFASQFL-GYQQHDSQELLSFLLDGLHEDLnrvkkkeyvelcNGAGRPDLevaqeawqnhkrrndsvIVDTFHGLFKST 191
Cdd:cd02659  74 RSFGWDSLnTFEQHDVQEFFRVLFDKLEEKL------------KGTGQEGL-----------------IKNLFGGKLVNY 124
                       170       180
                ....*....|....*....|.
gi 13529494 192 LVCPDCGNVSVTFDPFCYLSV 212
Cdd:cd02659 125 IICKECPHESEREEYFLDLQV 145
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
36-215 6.11e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 55.19  E-value: 6.11e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLSNVPQLTEYFLnNRYLEELNFRNPLGMKGELAEAYADLVkqtwSGYHRSIVPNVFKnkvghf 115
Cdd:cd02664   1 GLINLGNTCYMNSVLQALFMAKDFRRQVL-SLNLPRLGDSQSVMKKLQLLQAHLMHT----QRRAEAPPDYFLE------ 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 116 ASQ---FLGYQQHDSQELLSFLLDGLHedlnrvkkkeyvelcngagrpdlevaqeawqnhkrrndSVIVDTFHGLFKSTL 192
Cdd:cd02664  70 ASRppwFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTI 111
                       170       180
                ....*....|....*....|...
gi 13529494 193 VCPDCGNVSVTFDPFCYLSVPLP 215
Cdd:cd02664 112 RCLNCNSTSARTERFRDLDLSFP 134
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
520-665 1.18e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 53.67  E-value: 1.18e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 520 ECIKLFTTvetLEKENPWYCSSCKQHQLATKKLDLWMLP----EVLIIHLKRF-------SFSKISREKLDTLVQFPIRD 588
Cdd:cd02672 121 QLLKRSLD---LEKVTKAWCDTCCKYQPLEQTTSIRHLPdillLVLVINLSVTngefddiNVVLPSGKVMQNKVSPKAID 197
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 589 LDFSEfvikpKNESSPDLYKYDLIA-VSNHYGGMRDGHYTTF----ACNKDSGQWHYLDDNSVSPVnenqieSKAAYVLF 663
Cdd:cd02672 198 HDKLV-----KNRGQESIYKYELVGyVCEINDSSRGQHNVVFvikvNEESTHGRWYLFNDFLVTPV------SELAYILL 266

                ..
gi 13529494 664 YQ 665
Cdd:cd02672 267 YQ 268
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
32-140 2.16e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 53.36  E-value: 2.16e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  32 PGICGLTNLGNTCFMNSALQCLSNVPQlteyflnnrYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNK 111
Cdd:cd02671  22 LPFVGLNNLGNTCYLNSVLQVLYFCPG---------FKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPRRLLNA 92
                        90       100
                ....*....|....*....|....*....
gi 13529494 112 VGHFASQFLGYQQHDSQELLSFLLDGLHE 140
Cdd:cd02671  93 LREVNPMYEGYLQHDAQEVLQCILGNIQE 121
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
557-664 3.50e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 51.79  E-value: 3.50e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 557 LPEVLIIHLKRFSFSKISREKLDTLVQFP--IRDLdfsefvikpknesspdlyKYDLIAVSNHYGGMRDGHYTTFACNKD 634
Cdd:cd02665 128 LPPVLTFELSRFEFNQGRPEKIHDKLEFPqiIQQV------------------PYELHAVLVHEGQANAGHYWAYIYKQS 189
                        90       100       110
                ....*....|....*....|....*....|....*...
gi 13529494 635 SGQWHYLDDNSVSPVNENQIESKA--------AYVLFY 664
Cdd:cd02665 190 RQEWEKYNDISVTESSWEEVERDSfgggrnpsAYCLMY 227
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
36-215 4.76e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 51.60  E-value: 4.76e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494  36 GLTNLGNTCFMNSALQCLSNVPQLTEyflnnrYLEELNfrnplgmkgelaeayadlvkqtwsgyhrsivpnvfknkvghf 115
Cdd:cd02662   1 GLVNLGNTCFMNSVLQALASLPSLIE------YLEEFL------------------------------------------ 32
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494 116 asqflgyQQHDSQELLSFLLDGLHedlnrvkkkeyvelcNGAGRPdlevaqeawqnhkrrndsvivdtFHGLFKSTLVCP 195
Cdd:cd02662  33 -------EQQDAHELFQVLLETLE---------------QLLKFP-----------------------FDGLLASRIVCL 67
                       170       180
                ....*....|....*....|.
gi 13529494 196 DCGNVS-VTFDPFCYLSVPLP 215
Cdd:cd02662  68 QCGESSkVRYESFTMLSLPVP 88
USP7_C2 pfam14533
Ubiquitin-specific protease C-terminal; This C-terminal domain on many long ubiquitin-specific ...
206-327 2.17e-04

Ubiquitin-specific protease C-terminal; This C-terminal domain on many long ubiquitin-specific proteases has no known function.


Pssm-ID: 464201  Cd Length: 204  Bit Score: 42.86  E-value: 2.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13529494   206 PFCY--LSVPLPVC-SRRVLEVFFVPmDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAP---DKMIVADVFSHRFYKL 279
Cdd:pfam14533   1 ALYYevLDISLSELeNKKSIKVTWLS-PGLKKEEELELLVPKNGTVADLLEELQKKVKLSEegsGKIRLYEVSNHKIYKE 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 13529494   280 YQLEDPLSGILDRDDIFVYEVTgrIEPVEGSRDDIVVPVYLRERTPSR 327
Cdd:pfam14533  80 LSEDEPIDSLNDYLTLYAEEIP--EEELNLDEGERLIPVFHFQKEPSR 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH