|
Name |
Accession |
Description |
Interval |
E-value |
| TMF_TATA_bd |
pfam12325 |
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil ... |
817-913 |
4.67e-19 |
|
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.
Pssm-ID: 432481 [Multi-domain] Cd Length: 115 Bit Score: 83.36 E-value: 4.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 817 ATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQRHAAALELMGERDEELEELR 896
Cdd:pfam12325 19 STIRRLEGELASLKEELARLEAQRDEARQEIVKLMKENEELKELKKELEELEKELKELEQRYETTLELLGEKSEEVEELK 98
|
90
....*....|....*..
gi 12324587 897 ADIVDLKEMYREQVNML 913
Cdd:pfam12325 99 ADVEDLKEMYREQVQQL 115
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
392-752 |
1.73e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 1.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 392 NEAEVESLREEYHQRVATLER------KVYALTKERDTLRREQ--NKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQE 463
Cdd:COG1196 187 NLERLEDILGELERQLEPLERqaekaeRYRELKEELKELEAELllLKLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 464 AQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKDyysnalaaakeaQALAEER 543
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE-LEERLEELEEELA------------ELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 544 TNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDmfrgEIEDLQRRYQASERRCEELITQvpestrpL 623
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE----ELEELAEELLEALRAAAELAAQ-------L 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 624 LRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSlnfslpsspiQLSCLRAEQGQLSKSLEKERQRAAENR 703
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE----------EAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 12324587 704 QEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDL 752
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
339-909 |
4.10e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 4.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 339 ILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLksvtedlkrksnEAEVESLREEYHQRVATLERKVYALT 418
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEL------------EAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 419 KERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIK 498
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 499 RDKTATEKLLQETIEKHQAELtsqkdyysnalaaakeaqalaeertnnEARSELENRLKEAGERESMLVQALEELRQTLS 578
Cdd:COG1196 372 AELAEAEEELEELAEELLEAL---------------------------RAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 579 KKEQQavyredmfrgEIEDLQRRYQASERRCEELITQVPESTRpLLRQIEAMQEAESKAATAEERERSVNERLSQTLSRI 658
Cdd:COG1196 425 ELEEA----------LAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 659 NVLEAQLsLNFSLPSSPIQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQEL 738
Cdd:COG1196 494 LLLLEAE-ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 739 QEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQnsAFENDKFSEKRSMPEATMSPYYMKSITPSAYEAT 818
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY--VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 819 LRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQRHAAALELMGERDEELEELRAD 898
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570
....*....|.
gi 12324587 899 IVDLKEMYREQ 909
Cdd:COG1196 731 EAEREELLEEL 741
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
401-773 |
1.07e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.94 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 401 EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIinqvmaEGEELSKKQAAQEAQIRKLRAQIREAEEEK 480
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY------EGYELLKEKEALERQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 481 KGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQkdyysnalaaakEAQALAEERTNNEARSELENRLKEAG 560
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK------------IGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 561 EResmLVQALEELRQTLSKKEQqavyredmFRGEIEDLQRRYQASERRCEELitqvpESTRPLLRQieAMQEAESKAATA 640
Cdd:TIGR02169 322 ER---LAKLEAEIDKLLAEIEE--------LEREIEEERKRRDKLTEEYAEL-----KEELEDLRA--ELEEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 641 EERERSVNERLSQTLSRINvleaqlSLNFSLPSSPIQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRA 720
Cdd:TIGR02169 384 RDELKDYREKLEKLKREIN------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 12324587 721 NQLEVEIRELRRKH---KQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAV 773
Cdd:TIGR02169 458 EQLAADLSKYEQELydlKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
450-764 |
1.46e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 450 AEGEELSKKQAAQEAQIRKLRAQIREAEEEkkglitkLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNA 529
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKE-------LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 530 LAAAKEAQALAEERTNNEARSELENRLKEAGERESmlvQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRC 609
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEI---EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 610 EELitqvpesTRPLLRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQL-SLNFSLPSSPIQLSCLRAEQGQL 688
Cdd:TIGR02168 827 ESL-------ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELeALLNERASLEEALALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 689 SKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRE----LRRKHKQELQEVLLHNELIQKDLEREKASRLDLER 764
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNlqerLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
341-659 |
6.44e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 6.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEveslreeyhQRVATLERKVYALTKE 420
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR---------KDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 421 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEE----LSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVES 496
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAeieeLEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 497 IKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNN-EARSELENRLKEAGERESMLVQALEELRQ 575
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 576 TLSKKEQQAvyreDMFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQEA-ESKAATAEERERSVNERLSQt 654
Cdd:TIGR02168 909 KRSELRREL----EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKiEDDEEEARRRLKRLENKIKE- 983
|
....*
gi 12324587 655 LSRIN 659
Cdd:TIGR02168 984 LGPVN 988
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
390-731 |
7.68e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 7.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 390 KSNEAEVESLREeyhqRVATLERKVYALTKERDTLRREQNKKSDAaalLKEKDEIINQVMAEGEELSKKQAAQEAQIRKL 469
Cdd:TIGR02169 670 RSEPAELQRLRE----RLEGLKRELSSLQSELRRIENRLDELSQE---LSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 470 RAQIREAEEEKKGLITKLQSEENKVESikrdktateklLQETIEKHQAELTSQKDYYSnalaAAKEAQALAEERTNNEAR 549
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEE-----------LEEDLHKLEEALNDLEARLS----HSRIPEIQAELSKLEEEV 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 550 SELENRLKEAG---ERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEE-------LITQVPES 619
Cdd:TIGR02169 808 SRIEARLREIEqklNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEleaalrdLESRLGDL 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 620 TRPLLRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQLSCLRAEQGQLSKSLEK--ERQ 697
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRveEEI 967
|
330 340 350
....*....|....*....|....*....|....*....
gi 12324587 698 RAAEN-----RQEYLAAKEEADTLEGRANQLEVEIRELR 731
Cdd:TIGR02169 968 RALEPvnmlaIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
305-777 |
7.71e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 7.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 305 DFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAK-LMHENEQLKSV 383
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 384 TEDLKRKSNE-AEVESLREEYHQRVATLERKVYALTKERDTLrreqnkksdAAALLKEKDEIINQVMAEGEELSKKQAAQ 462
Cdd:COG1196 315 EERLEELEEElAELEEELEELEEELEELEEELEEAEEELEEA---------EAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 463 EAQIRKLRAQIREAEEEkKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDyysnalAAAKEAQALAEE 542
Cdd:COG1196 386 EELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE------AAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 543 RTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPESTRP 622
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 623 LLRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQLScLRAEQGQLSKSLEKERQRAAEN 702
Cdd:COG1196 539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG-AIGAAVDLVASDLREADARYYV 617
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12324587 703 RQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQL 777
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
|
| TMF_DNA_bd |
pfam12329 |
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA ... |
432-505 |
1.48e-09 |
|
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures.. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells.
Pssm-ID: 372049 [Multi-domain] Cd Length: 74 Bit Score: 55.01 E-value: 1.48e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 12324587 432 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATE 505
Cdd:pfam12329 1 SSLEKLLKEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKRAE 74
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
343-766 |
4.67e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 4.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 343 EKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESlreEYHQRVATLERKVYALTKERD 422
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA---EEKKKADEAKKKAEEDKKKAD 1408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 423 TLRREQNKKSDAAALLKEKDEI--INQVMAEGEELSK----KQAAQEAqiRKLRAQIREAEEEKKGLITKLQSEE-NKVE 495
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKadeaKKKAEEA--KKAEEAKKKAEEAKKADEAKKKAEEaKKAD 1486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 496 SIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQ 575
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 576 TLSKKEQQavyREDMFRGEIEDLQrryQASERRCEELITQVPESTRPLLRQIEAMQEAESKA--ATAEERERSVNERLSQ 653
Cdd:PTZ00121 1567 EEAKKAEE---DKNMALRKAEEAK---KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAeeLKKAEEEKKKVEQLKK 1640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 654 TLSRINVLEAQLslnfslpSSPIQLSCLRAEqgQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEvEIRELRRK 733
Cdd:PTZ00121 1641 KEAEEKKKAEEL-------KKAEEENKIKAA--EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKK 1710
|
410 420 430
....*....|....*....|....*....|...
gi 12324587 734 HKQELQEVllhnELIQKDLEREKASRLDLERTA 766
Cdd:PTZ00121 1711 EAEEKKKA----EELKKAEEENKIKAEEAKKEA 1739
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
378-476 |
6.35e-09 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 59.31 E-value: 6.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 378 EQLKSVTEDLKRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSK 457
Cdd:PRK05431 9 ENPEAVKEALAKRGFPLDVDELLE--------LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE 80
|
90
....*....|....*....
gi 12324587 458 KQAAQEAQIRKLRAQIREA 476
Cdd:PRK05431 81 EIKALEAELDELEAELEEL 99
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
341-885 |
2.24e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDL-KRKSNEAEVESLREEYHQRVATLERKVYALTK 419
Cdd:PRK02224 214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIeDLRETIAETEREREELAEEVRDLRERLEELEE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 420 ERDTLRREQNKKS-DAAALLKEKDEIINQVMAEGEELSKKQAAQEA---QIRKLRAQIREAEEEKKGLITKLQSEENKVE 495
Cdd:PRK02224 294 ERDDLLAEAGLDDaDAEAVEARREELEDRDEELRDRLEECRVAAQAhneEAESLREDADDLEERAEELREEAAELESELE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 496 SIKRDKTATEkllqETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTnnEARSELENRLKEAGERESMLVQALEELRQ 575
Cdd:PRK02224 374 EAREAVEDRR----EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR--EERDELREREAELEATLRTARERVEEAEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 576 TLSK----------KEQQAVYREDMFRGEIEDLqrryqasERRCEELITQVpESTRPLLRQIEAMQEAESKAATAEERER 645
Cdd:PRK02224 448 LLEAgkcpecgqpvEGSPHVETIEEDRERVEEL-------EAELEDLEEEV-EEVEERLERAEDLVEAEDRIERLEERRE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 646 SVNERLSQTLSRINvleaqlslnfslpSSPIQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEV 725
Cdd:PRK02224 520 DLEELIAERRETIE-------------EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKE 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 726 EIRELRRkhkqeLQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQ-NSAFENDKFSEKRSMPEATMSp 804
Cdd:PRK02224 587 RIESLER-----IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRElEAEFDEARIEEAREDKERAEE- 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 805 yYMKSITP-----SAYEATLRQKEGELASYMTRLASMESIRDSLAEELVKMtaecEKLRGEADRVPGIKAELEA-LRQRH 878
Cdd:PRK02224 661 -YLEQVEEkldelREERDDLQAEIGAVENELEELEELRERREALENRVEAL----EALYDEAEELESMYGDLRAeLRQRN 735
|
....*..
gi 12324587 879 AAALELM 885
Cdd:PRK02224 736 VETLERM 742
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
341-523 |
6.58e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 6.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHE----NEQLKSVTEDLKR-----KSNEAEVESLREEYHQRVATLE 411
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalARRIRALEQELAAleaelAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 412 RKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEE 491
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190
....*....|....*....|....*....|..
gi 12324587 492 NKVESIKRDKTATEKLLQETIEKHQAELTSQK 523
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQ 219
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-918 |
1.56e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 319 ELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHE-NEQLKSVTEDLKRKSNE-AEV 396
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSElEEEIEELQKELYALANEiSRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 397 ESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVM----AEGEELSKKQAAQEAQIRKLRAQ 472
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELesleAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 473 IREAEEEKKGLITKLQSEENKVESIKRDKTAteklLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSEL 552
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLER----LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 553 EnRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMfrgeIEDLQRRYQ----------------------------- 603
Cdd:TIGR02168 457 E-RLEEALEELREELEEAEQALDAAERELAQLQARLDS----LERLQENLEgfsegvkallknqsglsgilgvlselisv 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 604 ------ASERRCEELITQ-VPESTRPLLRQIEAMQEAES-KAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSP 675
Cdd:TIGR02168 532 degyeaAIEAALGGRLQAvVVENLNAAKKAIAFLKQNELgRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 676 IQLSCL-------------------------------------------------RAEQGQLSKS--------------- 691
Cdd:TIGR02168 612 PKLRKAlsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsaKTNSSILERRreieeleekieelee 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 692 ----LEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLER------EKASRLD 761
Cdd:TIGR02168 692 kiaeLEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaeieELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 762 LERTARINSSAVSEQL--PIARQNSAFENDK--FSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGELASYMTRLASME 837
Cdd:TIGR02168 772 EAEEELAEAEAEIEELeaQIEQLKEELKALReaLDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 838 SIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQRHAAALELMGERDEELEELRADIVDLKEMYREQVNMLVNKI 917
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931
|
.
gi 12324587 918 Q 918
Cdd:TIGR02168 932 E 932
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
292-760 |
3.24e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 292 KRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQaKADEIA 371
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK-KADEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 372 KlmhENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRR-EQNKKSDAAALLKEKDEIINQVMA 450
Cdd:PTZ00121 1322 K---KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKeEAKKKADAAKKKAEEKKKADEAKK 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 451 EGEELSKKQ---AAQEAQIRKLRAQIREAEEEKKGLITKLQSEE-NKVESIKR---DKTATEKLLQETIEKHQAElTSQK 523
Cdd:PTZ00121 1399 KAEEDKKKAdelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEaKKADEAKKkaeEAKKAEEAKKKAEEAKKAD-EAKK 1477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 524 DYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDmfrgEIEDLQRRYQ 603
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE----EKKKADELKK 1553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 604 ASERRCEELITQVPESTRPLLRQIEAMQEAEsKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQLS-CLR 682
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAE-EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAeEEK 1632
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 12324587 683 AEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRrkhKQELQEVLLHNELIQKDLEREKASRL 760
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK---KAEEDEKKAAEALKKEAEEAKKAEEL 1707
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
386-726 |
4.65e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 4.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 386 DLKRKSNEAEVESLREEYHQRVATLERKvyaltkeRDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQE-- 463
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEEL-------QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQke 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 464 -----AQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKDYYSNALAAAKEAQA 538
Cdd:TIGR02168 290 lyalaNEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE-LEEKLEELKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 539 LAEERtNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVyREDMFRGEIEDLQRRYQASE-----RRCEELI 613
Cdd:TIGR02168 369 ELESR-LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED-RRERLQQEIEELLKKLEEAElkelqAELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 614 TQVPESTRPLLRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQL----SCLRAEQGQLS 689
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALlknqSGLSGILGVLS 526
|
330 340 350
....*....|....*....|....*....|....*..
gi 12324587 690 KSLEKErqraaenrQEYLAAKEEAdtLEGRANQLEVE 726
Cdd:TIGR02168 527 ELISVD--------EGYEAAIEAA--LGGRLQAVVVE 553
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
341-877 |
4.82e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 4.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLENALqgaaRQAQAKADEIAKLMHENEQLKSVTEDLKRK--SNEAEVESLRE---EYHQRVATLERKVY 415
Cdd:PRK03918 201 ELEEVLREINEISSEL----PELREELEKLEKEVKELEELKEEIEELEKEleSLEGSKRKLEEkirELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 416 ALTKERDTLRREQNKKSDAAALLKEKDEIINqvmaEGEELSKKQAAQEAQIRKLRAQIREAE--EEKKGLITKLQSE-EN 492
Cdd:PRK03918 277 ELEEKVKELKELKEKAEEYIKLSEFYEEYLD----ELREIEKRLSRLEEEINGIEERIKELEekEERLEELKKKLKElEK 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 493 KVESIKRDKTATEKL--LQETIEKHQAELTSqkdyYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQAL 570
Cdd:PRK03918 353 RLEELEERHELYEEAkaKKEELERLKKRLTG----LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 571 EELRQTLSK-------------KEQQAVYREDMFR-----GEIEDLQRRYQASERRCEELITQVPE--STRPLLRQIEAM 630
Cdd:PRK03918 429 EELKKAKGKcpvcgrelteehrKELLEEYTAELKRiekelKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 631 QEaESKAATAEERERSvNERLSQTLSRINVLEAQLslnfslpsspiqlsclraeqgqlsKSLEKERQRAAENRQEYLAAK 710
Cdd:PRK03918 509 EE-KLKKYNLEELEKK-AEEYEKLKEKLIKLKGEI------------------------KSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 711 EEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEqLPIARQNSAFENDK 790
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE-LDKAFEELAETEKR 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 791 FSEKRSMPEATMSPYYMKsiTPSAYEATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIK-- 868
Cdd:PRK03918 642 LEELRKELEELEKKYSEE--EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEka 719
|
570
....*....|
gi 12324587 869 -AELEALRQR 877
Cdd:PRK03918 720 lERVEELREK 729
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
391-758 |
5.71e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 5.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 391 SNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLR 470
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 471 AQIREAEEEkkglITKLQSEENKVESIKRDKTATEKlLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEAR- 549
Cdd:PRK03918 266 ERIEELKKE----IEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERl 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 550 SELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPESTR-------- 621
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITArigelkke 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 622 --PLLRQIEAMQEAESKAAT-----AEERERSVNERLSQTLSRINVLEAQLSLnfslpsspiQLSCLRAEQGQLSKSLEK 694
Cdd:PRK03918 421 ikELKKAIEELKKAKGKCPVcgrelTEEHRKELLEEYTAELKRIEKELKEIEE---------KERKLRKELRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 695 ERQ-----------RAAENR------QEYLAAKEEADTLEGRANQLEVEIRELRR--KHKQELQEVLLHNELIQKDLERE 755
Cdd:PRK03918 492 ESEliklkelaeqlKELEEKlkkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKelEKLEELKKKLAELEKKLDELEEE 571
|
...
gi 12324587 756 KAS 758
Cdd:PRK03918 572 LAE 574
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
297-731 |
6.78e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 6.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 297 DEISERIVDFVSREIDSRLDTSELNESQRSSSATNvsdsADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHE 376
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAE----EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 377 NEQLKSVTEDLKRKSNEAEVEslREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQ--VMAEGEE 454
Cdd:COG1196 451 EAELEEEEEALLELLAELLEE--AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrgLAGAVAV 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 455 LSKKQAAQEAQI----------------RKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAE 518
Cdd:COG1196 529 LIGVEAAYEAALeaalaaalqnivveddEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL 608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 519 LTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDL 598
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 599 QRRYQASERRCEELITQvpestrplLRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQL 678
Cdd:COG1196 689 AEEELELEEALLAEEEE--------ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 12324587 679 SclRAEQGQLSKSLEKERQR------AAEnrQEYLAAKEEADTLEGRANQLEVEIRELR 731
Cdd:COG1196 761 D--LEELERELERLEREIEAlgpvnlLAI--EEYEELEERYDFLSEQREDLEEARETLE 815
|
|
| SerS |
COG0172 |
Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Seryl-tRNA synthetase ... |
378-476 |
7.46e-07 |
|
Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Seryl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439942 [Multi-domain] Cd Length: 421 Bit Score: 52.70 E-value: 7.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 378 EQLKSVTEDLKRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSK 457
Cdd:COG0172 9 ENPEAVKEALAKRGFDLDVDELLE--------LDEERRELQTEVEELRAERNALSKEIGKAKKKGEEAEALIAEVKELKE 80
|
90
....*....|....*....
gi 12324587 458 KQAAQEAQIRKLRAQIREA 476
Cdd:COG0172 81 EIKELEEELKELEEELDEL 99
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
551-878 |
1.43e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 551 ELENRLKEAgeRESMLVQALEELRQTLSKKEQQavyrEDMFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAM 630
Cdd:TIGR02168 217 ELKAELREL--ELALLVLRLEELREELEELQEE----LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 631 QEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLnfsLPSSPIQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAK 710
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEE---LESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 711 EEadtLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQnsafendk 790
Cdd:TIGR02168 368 EE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK-------- 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 791 fsekrsmpeatmspyymksitpsAYEATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIKAE 870
Cdd:TIGR02168 437 -----------------------ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
....*...
gi 12324587 871 LEALRQRH 878
Cdd:TIGR02168 494 LERLQENL 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
293-514 |
1.95e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 293 RSSSDEISERIVDFVSREIDSRLDTSELNES---QRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADE 369
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDlarLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 370 IAKLMHENEQLKSVTEDLKRKSNE--AEVESLREEYHQ---RVATLERKVYALTKERDTLRREQNKKSD----AAALLKE 440
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDElrAELTLLNEEAANlreRLESLERRIAATERRLEDLEEQIEELSEdiesLAAEIEE 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 441 KDEIINQVMAEGEELSKKQAAQEAQIRKLR-------AQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIE 513
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRseleelsEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
.
gi 12324587 514 K 514
Cdd:TIGR02168 944 R 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
309-913 |
2.21e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 309 REIDSRLDTSELNESQRS-SSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDL 387
Cdd:TIGR02168 305 QILRERLANLERQLEELEaQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 388 KRKSNEAE--VESLREEyhqrVATLERKVYALTKERDTLRREQNKKSDAA--ALLKEKDEIINQVMAEGEELSKKQAAQE 463
Cdd:TIGR02168 385 RSKVAQLElqIASLNNE----IERLEARLERLEDRRERLQQEIEELLKKLeeAELKELQAELEELEEELEELQEELERLE 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 464 AQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQE--TIEKHQAEL-----------TSQKDYYSNAL 530
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGvkALLKNQSGLsgilgvlseliSVDEGYEAAIE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 531 AAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQA-------------VYREDMFRGEIED 597
Cdd:TIGR02168 541 AALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILkniegflgvakdlVKFDPKLRKALSY 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 598 L----------------QRRYQASER---------RCEELITQVPESTR--PLLRQIEaMQEAESKAATAEERERSVNER 650
Cdd:TIGR02168 621 LlggvlvvddldnalelAKKLRPGYRivtldgdlvRPGGVITGGSAKTNssILERRRE-IEELEEKIEELEEKIAELEKA 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 651 LSQTLSRINVLEAQLS-LNFSLPSSPIQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRE 729
Cdd:TIGR02168 700 LAELRKELEELEEELEqLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 730 LRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQNSAFE---NDKFSEKRSMPEAtmspyy 806
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATErrlEDLEEQIEELSED------ 853
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 807 MKSITPS--AYEATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRvpgIKAELEALRQRHAAAlel 884
Cdd:TIGR02168 854 IESLAAEieELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE---LRRELEELREKLAQL--- 927
|
650 660
....*....|....*....|....*....
gi 12324587 885 mgerDEELEELRADIVDLKEMYREQVNML 913
Cdd:TIGR02168 928 ----ELRLEGLEVRIDNLQERLSEEYSLT 952
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
355-757 |
3.23e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 355 ALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEvESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDA 434
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELE-AQIRGNGGDRLEQLEREIERLERELEERERRRARLEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 435 AALLKEKD--------EIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEK 506
Cdd:COG4913 368 LAALGLPLpasaeefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRD 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 507 LL---------------------------QETIE--------------KHQAELTS---------QKDYYSNALAAAKEA 536
Cdd:COG4913 448 ALaealgldeaelpfvgelievrpeeerwRGAIErvlggfaltllvppEHYAAALRwvnrlhlrgRLVYERVRTGLPDPE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 537 QALAEERT--------NNEARSELENRLkeAGERESMLVQALEELRQTlskkeQQAVYREDMF-----RGEIED---LQR 600
Cdd:COG4913 528 RPRLDPDSlagkldfkPHPFRAWLEAEL--GRRFDYVCVDSPEELRRH-----PRAITRAGQVkgngtRHEKDDrrrIRS 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 601 RY---QASERRCEELITQVPESTRPLLRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLslnfslpsspiQ 677
Cdd:COG4913 601 RYvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER-----------E 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 678 LSCLRAEQGQLSKS---LEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHkQELQEVLLHNELIQKDLER 754
Cdd:COG4913 670 IAELEAELERLDASsddLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL-DELQDRLEAAEDLARLELR 748
|
...
gi 12324587 755 EKA 757
Cdd:COG4913 749 ALL 751
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
341-768 |
7.06e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 7.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVtedLKRKSNEAEVESLREEyhqrVATLERKVYALTKE 420
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL---LQLLPLYQELEALEAE----LAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 421 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQ-EAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKR 499
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDlAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 500 DKTATEklLQETIEKHQ---------AELTSQKDYYSNALAAAK----------EAQALAEERTNNEARSELEnRLKEAG 560
Cdd:COG4717 235 ELEAAA--LEERLKEARlllliaaalLALLGLGGSLLSLILTIAgvlflvlgllALLFLLLAREKASLGKEAE-ELQALP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 561 ERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEEL-ITQVPESTRPLLRQIEAMQEAE--SKA 637
Cdd:COG4717 312 ALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqLEELEQEIAALLAEAGVEDEEElrAAL 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 638 ATAEERERSVNER--LSQTLSRINVLEAQLSLNFSLPSSPIQLSCLRAEQGQLSKSLEK--ERQRAAENRQEYLAAKEEA 713
Cdd:COG4717 392 EQAEEYQELKEELeeLEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEElrEELAELEAELEQLEEDGEL 471
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 12324587 714 DTLEGRANQLEVEIRELRRKH-KQELQEVLLHNelIQKDLEREKASRLdLERTARI 768
Cdd:COG4717 472 AELLQELEELKAELRELAEEWaALKLALELLEE--AREEYREERLPPV-LERASEY 524
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
357-628 |
8.07e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 8.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 357 QGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAA 436
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 437 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKR----------DKTATEK 506
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRalleerfaaaLGDAVER 765
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 507 LLQETIEKHQAELTSQKDYYSNALAAAKEA------QALAEERTNNEARSELENRLKEAGEREsmLVQALEELRQTLSKK 580
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRAfnrewpAETADLDADLESLPEYLALLDRLEEDG--LPEYEERFKELLNEN 843
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 12324587 581 EQQavyredmfrgEIEDLQRRYQASERRCEELITQVPEStrplLRQIE 628
Cdd:COG4913 844 SIE----------FVADLLSKLRRAIREIKERIDPLNDS----LKRIP 877
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
340-505 |
8.08e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 8.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 340 LELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAE-----VESLREEYHQRVATL--ER 412
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEleieeVEARIKKYEEQLGNVrnNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 413 KVYALTKERDTLRREQnkksdaaallKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEEN 492
Cdd:COG1579 90 EYEALQKEIESLKRRI----------SDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELE 159
|
170
....*....|...
gi 12324587 493 KVESiKRDKTATE 505
Cdd:COG1579 160 ELEA-EREELAAK 171
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
312-863 |
8.92e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.37 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 312 DSRLDTSELNESQRSSSATN---VSDSADVILELEKTKKEIKMLENALQgaARQAQAKADEIAKLMHENEQLKSVTEDLK 388
Cdd:pfam12128 270 DETLIASRQEERQETSAELNqllRTLDDQWKEKRDELNGELSAADAAVA--KDRSELEALEDQHGAFLDADIETAAADQE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 389 RKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKsDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIR- 467
Cdd:pfam12128 348 QLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNR-DIAGIKDKLAKIREARDRQLAVAEDDLQALESELRe 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 468 KLRAQIREAEEEKKGLITKLQSEENKVESIkrdkTATEKLL------QETIEKHQAELTSqkdyysnalAAAKEAQALAE 541
Cdd:pfam12128 427 QLEAGKLEFNEEEYRLKSRLGELKLRLNQA----TATPELLlqlenfDERIERAREEQEA---------ANAEVERLQSE 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 542 ERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCE-----ELITQV 616
Cdd:pfam12128 494 LRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRtdldpEVWDGS 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 617 PESTRPL------LRQIEA------MQEAESKAATAEE---RERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQLScl 681
Cdd:pfam12128 574 VGGELNLygvkldLKRIDVpewaasEEELRERLDKAEEalqSAREKQAAAEEQLVQANGELEKASREETFARTALKNA-- 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 682 RAEQGQL-----SKSLEKERQRAAENRQeylaAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREK 756
Cdd:pfam12128 652 RLDLRRLfdekqSEKDKKNKALAERKDS----ANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGAL 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 757 ASRLdlertARINSSAVSEQLPIARQNSAFENDKFSE--KRSMPEATMSPYYMKSITPSAYEATLRQKEGELASYMTRLA 834
Cdd:pfam12128 728 DAQL-----ALLKAAIAARRSGAKAELKALETWYKRDlaSLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQ 802
|
570 580 590
....*....|....*....|....*....|
gi 12324587 835 SMESI-RDSLAEELVKMTAECEKLRGEADR 863
Cdd:pfam12128 803 ETWLQrRPRLATQLSNIERAISELQQQLAR 832
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
573-743 |
9.03e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 9.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 573 LRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEEL-----ITQVPESTRPLLRQIEAMQ----EAESKAATAEER 643
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFrqkngLVDLSEEAKLLLQQLSELEsqlaEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 644 ERSVNERLSQT----------------LSRINVLEAQLS--LNFSLPSSP--IQL--------SCLRAEQGQLSKSLEKE 695
Cdd:COG3206 242 LAALRAQLGSGpdalpellqspviqqlRAQLAELEAELAelSARYTPNHPdvIALraqiaalrAQLQQEAQRILASLEAE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 12324587 696 RQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKH--KQELQEVLL 743
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVevARELYESLL 371
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
341-514 |
9.84e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 9.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKR-----KSNEAEVESLREEYHQRVATLERKV- 414
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKkisslKEKIEKLESEKKEKESKISDLEDELn 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 415 --------YALTKERDTLRREQNK-KSDAAALLK---EKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKG 482
Cdd:TIGR04523 549 kddfelkkENLEKEIDEKNKEIEElKQTQKSLKKkqeEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
170 180 190
....*....|....*....|....*....|..
gi 12324587 483 LITKLQSEENKVESIKRDKTATEKLLQETIEK 514
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
396-766 |
1.23e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 396 VESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQI-- 473
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLql 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 474 -------REAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKDYYSNALAAAKEAQALAEERTnN 546
Cdd:COG4717 128 lplyqelEALEAELAELPERLEELEERLEELRELEEELEELEAE-LAELQEELEELLEQLSLATEEELQDLAEELEEL-Q 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 547 EARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPESTRPL--L 624
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVlgL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 625 RQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQLSCLRAEQGQLSKSLEKERQRAAENRQ 704
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 12324587 705 EYLaaKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTA 766
Cdd:COG4717 366 EEL--EQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEAL 425
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
333-518 |
1.35e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 333 SDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLmheNEQLKSVTEDLKRKsnEAEVESLREEYHQRVATLER 412
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAL---QAEIDKLQAEIAEA--EAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 413 KVYALTKER---------DTLRREQNKKsdaaALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGL 483
Cdd:COG3883 98 SGGSVSYLDvllgsesfsDFLDRLSALS----KIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190
....*....|....*....|....*....|....*
gi 12324587 484 ITKLQSEENKVESIKRDKTATEKLLQETIEKHQAE 518
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
304-671 |
1.55e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.67 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 304 VDFVSR-EIDSRLDT---SELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLmhENEQ 379
Cdd:PRK11281 33 GDLPTEaDVQAQLDAlnkQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL--KDDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 380 LKSVTEDLKRKSNeAEVESLREEYHQRVATLERKVYALTKERDTLR----REQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:PRK11281 111 DEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQtqpeRAQAALYANSQRLQQIRNLLKGGKVGGKAL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 456 SKKQAAQ-EAQIRKLRAQIREAEEEKKGlITKLQSEENKvesiKRD-KTATEKLLQETIEKHQAELTSQKDYYSNALAAA 533
Cdd:PRK11281 190 RPSQRVLlQAEQALLNAQNDLQRKSLEG-NTQLQDLLQK----QRDyLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 534 KEAQALAEERTNN-------EARSELENRLKEAGERESMLVQ-------ALEELRQT----------------LSK---K 580
Cdd:PRK11281 265 AQSQDEAARIQANplvaqelEINLQLSQRLLKATEKLNTLTQqnlrvknWLDRLTQSernikeqisvlkgsllLSRilyQ 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 581 EQQAVYREDMFRG---EIEDLqRRYQ--ASERRceELITQVPEstrpllrQIEAMQEAESKAATAEERE---RSVNERlS 652
Cdd:PRK11281 345 QQQALPSADLIEGladRIADL-RLEQfeINQQR--DALFQPDA-------YIDKLEAGHKSEVTDEVRDallQLLDER-R 413
|
410 420
....*....|....*....|
gi 12324587 653 QTLSRIN-VLEAQLSLNFSL 671
Cdd:PRK11281 414 ELLDQLNkQLNNQLNLAINL 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
428-634 |
1.89e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 428 QNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEkkglITKLQSEENKVESIKRDKTATEKL 507
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 508 LQETIEKHQAEL---------TSQKDYYS---NALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQ 575
Cdd:COG4942 95 LRAELEAQKEELaellralyrLGRQPPLAlllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 12324587 576 TLSKKEQqavyredmfrgEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQEAE 634
Cdd:COG4942 175 ELEALLA-----------ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA 222
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
298-877 |
1.92e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 298 EISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHEN 377
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 378 EQLKSVTEDLK--RKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:TIGR02169 339 EELEREIEEERkrRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 456 SKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEK---LLQETIEKHQAELTSQKDYYSnaLAA 532
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQelyDLKEEYDRVEKELSKLQRELA--EAE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 533 AKEAQALAEERTNNEARSELENRLK----------------------EAGER--------ESMLVQALEELRQT------ 576
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgsvgeryataievAAGNRlnnvvvedDAVAKEAIELLKRRkagrat 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 577 ---LSKKEQQAVY----REDMFRGEIEDL---QRRYQASERRC--EELITQVPESTRPLLRQIE-------------AMQ 631
Cdd:TIGR02169 577 flpLNKMRDERRDlsilSEDGVIGFAVDLvefDPKYEPAFKYVfgDTLVVEDIEAARRLMGKYRmvtlegelfeksgAMT 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 632 EAESKAATAEERERSVNERLSQTLSRINVLEAQLS---------------LNFSLPSSPIQLSCLRAEQGQLSKSLEKER 696
Cdd:TIGR02169 657 GGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSslqselrrienrldeLSQELSDASRKIGEIEKEIEQLEQEEEKLK 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 697 QRAAENR-------QEYLAAKEEADTLEGRANQLEVEIRELR------------------RKHKQELQEVLLHNELIQKD 751
Cdd:TIGR02169 737 ERLEELEedlssleQEIENVKSELKELEARIEELEEDLHKLEealndlearlshsripeiQAELSKLEEEVSRIEARLRE 816
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 752 LEReKASRLDLERtarinssavsEQLPIARQNSAFENDKFSEKRSMPEATMSpyymksitpsAYEATLRQKEGELASYMT 831
Cdd:TIGR02169 817 IEQ-KLNRLTLEK----------EYLEKEIQELQEQRIDLKEQIKSIEKEIE----------NLNGKKEELEEELEELEA 875
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 12324587 832 RLASMESIRDSLAEELVKMTAECEKLRgeaDRVPGIKAELEALRQR 877
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELE---RKIEELEAQIEKKRKR 918
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
347-764 |
1.95e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 347 KEIKMLENALqgaaRQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEYHQRvatlerkVYALTKERDTLRR 426
Cdd:COG4717 71 KELKELEEEL----KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-------LLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 427 EQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEK-KGLITKLQSEENKVESIKRDKTATE 505
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 506 ---KLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAG----ERESMLVQALEELRQTLS 578
Cdd:COG4717 220 eelEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 579 KKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITqvPESTRPLLRQIEAMQEAESKAATAEERER--SVNERLSQTLS 656
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLS--PEELLELLDRIEELQELLREAEELEEELQleELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 657 RINV-LEAQLSlnfslpsspiqlscLRAEQGQLSKSLEKERQRAAENRQEY------LAAKEEADTLEGRANQLEVEIRE 729
Cdd:COG4717 378 EAGVeDEEELR--------------AALEQAEEYQELKEELEELEEQLEELlgeleeLLEALDEEELEEELEELEEELEE 443
|
410 420 430
....*....|....*....|....*....|....*
gi 12324587 730 LRRKHKQELQEVLLHNELIQKDLEREKASRLDLER 764
Cdd:COG4717 444 LEEELEELREELAELEAELEQLEEDGELAELLQEL 478
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
268-498 |
2.81e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.89 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 268 IESPVAHPSLIFESDGSPYESS---IPKRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDS--ADVILEL 342
Cdd:PLN02939 58 QRSSNSKLQSNTDENGQLENTSlrtVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFqlEDLVGMI 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 343 EKTKKEIKMLEnalqgaarQAQAKA-DEIAKLMHENEQLK-------------------SVTEDLKRKSNEAEVESLREE 402
Cdd:PLN02939 138 QNAEKNILLLN--------QARLQAlEDLEKILTEKEALQgkinilemrlsetdariklAAQEKIHVEILEEQLEKLRNE 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 403 YHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEkdEIINqvMAEGEE----LSKKQAAQEAQIRKLRAQIREAEE 478
Cdd:PLN02939 210 LLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKA--ELIE--VAETEErvfkLEKERSLLDASLRELESKFIVAQE 285
|
250 260
....*....|....*....|.
gi 12324587 479 EKKGLIT-KLQSEENKVESIK 498
Cdd:PLN02939 286 DVSKLSPlQYDCWWEKVENLQ 306
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
376-757 |
4.13e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 376 ENEQLKSVTEDLKRKSNEaevesLREEYHQRVATLERkvyaltkERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:pfam02463 174 ALKKLIEETENLAELIID-----LEELKLQELKLKEQ-------AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 456 SKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKE 535
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 536 AQALAEERTNN--EARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRryQASERRCEELI 613
Cdd:pfam02463 322 EKKKAEKELKKekEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSS--AAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 614 TQVPESTRPLLRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQLsclraEQGQLSKSLE 693
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDE-----LELKKSEDLL 474
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 12324587 694 KERQRAAENRQEylaAKEEADTLEGRANQLEVEIRElRRKHKQELQEVLLHNELIQKDLEREKA 757
Cdd:pfam02463 475 KETQLVKLQEQL---ELLLSRQKLEERSQKESKARS-GLKVLLALIKDGVGGRIISAHGRLGDL 534
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
341-577 |
4.84e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLEnALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEyhqrVATLERKVYALTKE 420
Cdd:COG4913 243 ALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAE----LARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 421 RDTLRREqnkksdaaallkeKDEIINQVMAEGEElskkqaaqeaQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRD 500
Cdd:COG4913 318 LDALREE-------------LDELEAQIRGNGGD----------RLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 12324587 501 KTATEKLLQETIEKHQAELTSQKDYYSnaLAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTL 577
Cdd:COG4913 375 LPASAEEFAALRAEAAALLEALEEELE--ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
341-664 |
8.46e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 8.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSneAEVESLREEYHQRVATLERKVYALTKE 420
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL--EELEEDLSSLEQEIENVKSELKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 421 RDTLRREQNKKSDAAALLKEK--DEIINQVMAEGEELskkqaaqEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIK 498
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARlsHSRIPEIQAELSKL-------EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 499 RDKTATeKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNN--EARSELENRLKEAGERESMLVQALEELRQT 576
Cdd:TIGR02169 840 EQRIDL-KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDlkKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 577 LSKKEQQAVYREDMFRgEIEDLQRRYQaSERRCEELITQVPESTRPLLRQIEAMQEAESKaatAEERERSVNERLSQTLS 656
Cdd:TIGR02169 919 LSELKAKLEALEEELS-EIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEPVNML---AIQEYEEVLKRLDELKE 993
|
....*...
gi 12324587 657 RINVLEAQ 664
Cdd:TIGR02169 994 KRAKLEEE 1001
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
547-738 |
8.78e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 8.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 547 EARSELENRLKEAgeresmLVQAlEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELitqvpestrplLRQ 626
Cdd:COG3096 980 GENSDLNEKLRAR------LEQA-EEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQEL-----------EQE 1041
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 627 IEAM--QEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLnfslpsspiqlscLRAEQGQLSKSLEKERQRAAENRQ 704
Cdd:COG3096 1042 LEELgvQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTR-------------CEAEMDSLQKRLRKAERDYKQERE 1108
|
170 180 190
....*....|....*....|....*....|....
gi 12324587 705 EYLAAKEEADTLEGRANQLEVEirelRRKHKQEL 738
Cdd:COG3096 1109 QVVQAKAGWCAVLRLARDNDVE----RRLHRREL 1138
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
401-601 |
1.11e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 401 EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALlkekDEIINqvMAEGEELSKKQAAQEAQIRKLRAQIREAEEEK 480
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAEL----EYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 481 KGLITKLQSEENKVESIKR----DKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKE--AQALAEERTNNEARSELEN 554
Cdd:COG4913 312 ERLEARLDALREELDELEAqirgNGGDRLEQLEREIERLERELEERERRRARLEALLAAlgLPLPASAEEFAALRAEAAA 391
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 12324587 555 RLKEAGERESMLVQALEELRQTLSKKEQQavyrEDMFRGEIEDLQRR 601
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAALRDLRRE----LRELEAEIASLERR 434
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
401-904 |
1.16e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 401 EEYHQRVAtlerkvYALTKERDTLRREQNKKSDAAALLKEKDEiiNQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEK 480
Cdd:PRK02224 165 EEYRERAS------DARLGVERVLSDQRGSLDQLKAQIEEKEE--KDLHERLNGLESELAELDEEIERYEEQREQARETR 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 481 KGLITKLQSEENKVESIKRDKTATEKLlQETIEKHQAELTSQKDyysnalaaakeaqalaEERTNNEARSELENRLKEA- 559
Cdd:PRK02224 237 DEADEVLEEHEERREELETLEAEIEDL-RETIAETEREREELAE----------------EVRDLRERLEELEEERDDLl 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 560 --GERESMLVQALEELRQTLSKKE-------QQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAM 630
Cdd:PRK02224 300 aeAGLDDADAEAVEARREELEDRDeelrdrlEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 631 QEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSlpsspiQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAK 710
Cdd:PRK02224 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELRE------ERDELREREAELEATLRTARERVEEAEALLEAGK 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 711 --EEADTLEG--RANQLEvEIRELRRKHKQELQEVLLHNELIQKDLER-----EKASRLDlerTARINSSAVSEQLPIAR 781
Cdd:PRK02224 454 cpECGQPVEGspHVETIE-EDRERVEELEAELEDLEEEVEEVEERLERaedlvEAEDRIE---RLEERREDLEELIAERR 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 782 QNSAFENDKFSEKRSMPEATMSpyymksiTPSAYEATLRQKEGELASYMTRLASMESIRDSLAEELVKMtaecEKLRGEA 861
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEA-------EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL----ERIRTLL 598
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 12324587 862 DRVPGIKAELEALRQRHAAALELMGERDEELEELRADIVDLKE 904
Cdd:PRK02224 599 AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEA 641
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
463-618 |
1.61e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 463 EAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATE---KLLQETIEKHQAEL---TSQKDYysnalaaakeA 536
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEleiEEVEARIKKYEEQLgnvRNNKEY----------E 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 537 QALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQV 616
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
..
gi 12324587 617 PE 618
Cdd:COG1579 173 PP 174
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
393-902 |
2.17e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 393 EAEVESLRE-EYHQRVATLERKVYALTKErdtLRREQNKKSDAAALLKEKDEIInqvmAEGEELSKKQAAQEAQIRKLRA 471
Cdd:PRK02224 193 KAQIEEKEEkDLHERLNGLESELAELDEE---IERYEEQREQARETRDEADEVL----EEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 472 QIREAEEEKKGLITKLQSEENKVESIK------RDKTATEKLLQETIEKHQAELTSQKDyysnALAAAKEAQALAEERTN 545
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEeerddlLAEAGLDDADAEAVEARREELEDRDE----ELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 546 NEARS------ELENRLKEAGERESMLVQALEELRQTLSKKEQQAvyreDMFRGEIEDLQRRYQASERRCEELITQVPES 619
Cdd:PRK02224 342 EEAESlredadDLEERAEELREEAAELESELEEAREAVEDRREEI----EELEEEIEELRERFGDAPVDLGNAEDFLEEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 620 TRPLLRQIEAMQEAESKAATAEERERSvNERLsqtlsrinvLEAQLSLNFSLPsspiqlsclrAEQGQLSKSLEKERQRA 699
Cdd:PRK02224 418 REERDELREREAELEATLRTARERVEE-AEAL---------LEAGKCPECGQP----------VEGSPHVETIEEDRERV 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 700 AENRQEYLAAKEEADTLEGRANQL----EVEIRELRRKHKQELQEVLL--HNELIQKDLE-----REKASRLDLE-RTAR 767
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAedlvEAEDRIERLEERREDLEELIaeRRETIEEKREraeelRERAAELEAEaEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 768 INSSAVSEQLPIARQNSAFENDKFSEKRSMPEATmspyymksitpsayeATLRQKEGELASYMTRLASMESIRDSLAEel 847
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESL---------------ERIRTLLAAIADAEDEIERLREKREALAE-- 620
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 848 vKMTAECEKLRGEADRVPGIKAE-----LEALRQRHAAALELMGERDEELEELRADIVDL 902
Cdd:PRK02224 621 -LNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYLEQVEEKLDELREERDDL 679
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
388-519 |
2.69e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 388 KRKSNEAEVESLREEyhqrVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKDEIINQVMA--EGEELSKKQAA 461
Cdd:COG1579 25 RLKELPAELAELEDE----LAALEARLEAAKTELEDLEKEIKRLeleiEEVEARIKKYEEQLGNVRNnkEYEALQKEIES 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 12324587 462 QEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAEL 519
Cdd:COG1579 101 LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
311-527 |
3.75e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 311 IDSRLDTSELN-ESQRSSSATNVSDSADVILELEKTKKEIKMLENALQgaarqaqakaDEIAKLmheNEQLKSVTEDLKR 389
Cdd:PHA02562 193 IQQQIKTYNKNiEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT----------DELLNL---VMDIEDPSAALNK 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 390 KSNEAEVESLREEYHQRVATLERK-------VYALTKERDTLRREQNKKSDAAALLKEKDEIINQV---MAEGEELSKKQ 459
Cdd:PHA02562 260 LNTAAAKIKSKIEQFQKVIKMYEKggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELeeiMDEFNEQSKKL 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 12324587 460 AAQEAQIRKLRAQIREAEEEKKglitKLQSEENKVESIKRDKTATEKLLQET---IEKHQAELTSQKDYYS 527
Cdd:PHA02562 340 LELKNKISTNKQSLITLVDKAK----KVKAAIEELQAEFVDNAEELAKLQDEldkIVKTKSELVKEKYHRG 406
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
385-863 |
3.99e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 385 EDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAegEELSKKQAAQEA 464
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA--EEARKAEDAKKA 1226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 465 Q-IRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQkdyySNALAAAKEAQALAEER 543
Cdd:PTZ00121 1227 EaVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK----AEEKKKADEAKKAEEKK 1302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 544 TNNEARSELENR-----LKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPE 618
Cdd:PTZ00121 1303 KADEAKKKAEEAkkadeAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 619 strpLLRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSLPSSPIQlscLRAEQGQLSKSLEK--ER 696
Cdd:PTZ00121 1383 ----AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK---KKAEEAKKADEAKKkaEE 1455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 697 QRAAENRQEYLAAKEEADTLEGRANQLEvEIRELRRKHKQELQEVllhNELIQKDLEREKASRLDLERTARinssAVSEQ 776
Cdd:PTZ00121 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAK-KADEAKKKAEEAKKKA---DEAKKAAEAKKKADEAKKAEEAK----KADEA 1527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 777 LPIARQNSAFENDKFSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGELASyMTRLASMESIRDSLAEELVKMTAECEK 856
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA-LRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
....*..
gi 12324587 857 LRGEADR 863
Cdd:PTZ00121 1607 MKAEEAK 1613
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
339-589 |
4.59e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 339 ILELEKTKKEIKMLENALQgaarqaQAKAdEIAKLMHENEQ--LKSVTEDLKRKSNE-AEVESLREEYHQRVATLERKVY 415
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLN------QLKS-EISDLNNQKEQdwNKELKSELKNQEKKlEEIQNQISQNNKIISQLNEQIS 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 416 ALTKERDTLRREQNKKSDAaalLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGL---ITKLQSEEN 492
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRE---LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKdeqIKKLQQEKE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 493 KVE------------------SIKRDKTATEKL---LQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTN-----N 546
Cdd:TIGR04523 423 LLEkeierlketiiknnseikDLTNQDSVKELIiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkklN 502
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 12324587 547 EARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYRED 589
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
621-878 |
4.74e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 621 RPLLRQIEAMQE-------AESKAATAEERE------RSVNERLSQTLSRINVLEAQLSLnfslpsspiqlscLRAEQGQ 687
Cdd:COG4913 221 PDTFEAADALVEhfddlerAHEALEDAREQIellepiRELAERYAAARERLAELEYLRAA-------------LRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 688 lsKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLlhnELIQKDLEREKASRLDLERTAR 767
Cdd:COG4913 288 --RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL---EQLEREIERLERELEERERRRA 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 768 INSSAVsEQLPIARQNSAfendkfsekrsmpeatmspyymksitpSAYEATLRQkegelasYMTRLASMESIRDSLAEEL 847
Cdd:COG4913 363 RLEALL-AALGLPLPASA---------------------------EEFAALRAE-------AAALLEALEEELEALEEAL 407
|
250 260 270
....*....|....*....|....*....|.
gi 12324587 848 VKMTAECEKLRGEADRvpgIKAELEALRQRH 878
Cdd:COG4913 408 AEAEAALRDLRRELRE---LEAEIASLERRK 435
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
385-880 |
6.30e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 385 EDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDA----------AALLKEKDEIINQVMAEGEE 454
Cdd:PTZ00121 1203 EAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEeirkfeearmAHFARRQAAIKAEEARKADE 1282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 455 LSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAK 534
Cdd:PTZ00121 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 535 EAQALAEERTNNEARSELENRLKEAGEresmlVQALEELRQTL--SKKEQQAVYREDMFRGEIEDLQRRYQaSERRCEEL 612
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEE-----KKKADEAKKKAeeDKKKADELKKAAAAKKKADEAKKKAE-EKKKADEA 1436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 613 ITQVPEStrpllRQIEAMQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSLNFSlpsspiqlscLRAEQGQLSKSL 692
Cdd:PTZ00121 1437 KKKAEEA-----KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK----------KKAEEAKKKADE 1501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 693 EKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSA 772
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 773 VSEQLPIARQNSAFENDKFSEKrsmpEATMSPYYMKSITPSAYEATLRQKEGELASYMTRLASMESIRDSLAEELVK--- 849
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEE----EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKaee 1657
|
490 500 510
....*....|....*....|....*....|....
gi 12324587 850 ---MTAECEKLRGEADRVPGIKAELEALRQRHAA 880
Cdd:PTZ00121 1658 enkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
300-479 |
6.53e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 40.43 E-value: 6.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 300 SERIVDFVSReIDSRLDTSELNESQRSSSATNVSDSADVI----LELEKTKKEIKMLENALQGAARQAQAKADEIAKlmh 375
Cdd:pfam13166 278 DDEFTEFQNR-LQKLIEKVESAISSLLAQLPAVSDLASLLsafeLDVEDIESEAEVLNSQLDGLRRALEAKRKDPFK--- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 376 eNEQLKSVTEDLKR-KSNEAEVESLREEYHQRVATLERKVyalTKERDTLRREQNKKSDAaaLLKEKDEIINQVMAEGEE 454
Cdd:pfam13166 354 -SIELDSVDAKIESiNDLVASINELIAKHNEITDNFEEEK---NKAKKKLRLHLVEEFKS--EIDEYKDKYAGLEKAINS 427
|
170 180
....*....|....*....|....*
gi 12324587 455 LSKKQAAQEAQIRKLRAQIREAEEE 479
Cdd:pfam13166 428 LEKEIKNLEAEIKKLREEIKELEAQ 452
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
546-737 |
7.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 546 NEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDmfrgEIEDLQRRYQASERRCEELITQVPESTRPLLR 625
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----ELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 626 QIEAMQ--------------EAESKAATAEERERSVNERLSQTLSRINVLEAQL-SLNFSLPSSPIQLSCLRAEQGQLSK 690
Cdd:COG4942 109 LLRALYrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELaALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 12324587 691 SLEKERQR----AAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQE 737
Cdd:COG4942 189 ALEALKAErqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
341-621 |
7.55e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKeIKMLENALQGAA-RQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTK 419
Cdd:pfam17380 311 EVERRRK-LEEAEKARQAEMdRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 420 ERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQaaQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKR 499
Cdd:pfam17380 390 KNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ--EEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 500 DKT--ATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMlvQALEELRQTL 577
Cdd:pfam17380 468 QEEerKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR--REAEEERRKQ 545
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 12324587 578 SKKEQQAVYREDMFRGEIEdlQRRYQASERRcEELITQVPESTR 621
Cdd:pfam17380 546 QEMEERRRIQEQMRKATEE--RSRLEAMERE-REMMRQIVESEK 586
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
333-753 |
7.85e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 333 SDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEaeVESLREEYHQRVATLER 412
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYND--LKKQKEELENELNLLEK 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 413 KVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQA--------------AQEAQIRKLRAQIREAEE 478
Cdd:TIGR04523 181 EKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNqlkdniekkqqeinEKTTEISNTQTQLNQLKD 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 479 EKKGLITKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKE 558
Cdd:TIGR04523 261 EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ-LKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQ 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 559 AGERESMLVQALEELRQTLSKKEQQAVYREDmfrgEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQEAESKAA 638
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELEEKQN----EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 639 TAEERERSVNERLSQTLSRINVLEAQLS---------------LNFSLPSSPIQLSCLRAEQGQLSKSLEKERQRAAENR 703
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKdltnqdsvkeliiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKE 495
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 12324587 704 QEYLAAKEEADTLEGRANQLEVEIRELRRKHKQelqevlLHNELIQKDLE 753
Cdd:TIGR04523 496 KELKKLNEEKKELEEKVKDLTKKISSLKEKIEK------LESEKKEKESK 539
|
|
| Seryl_tRNA_N |
pfam02403 |
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA ... |
388-476 |
8.78e-03 |
|
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Pssm-ID: 426757 [Multi-domain] Cd Length: 108 Bit Score: 36.80 E-value: 8.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 388 KRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIR 467
Cdd:pfam02403 20 KRGVDVLDVDELLE--------LDEKRRELQVELEELQAERNELSKEIGQAKKKKEDADALIAEVKELKDELKALEAELK 91
|
....*....
gi 12324587 468 KLRAQIREA 476
Cdd:pfam02403 92 ELEAELDKL 100
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
341-737 |
8.96e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 8.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNE--AEVESLREEYHQRVATLERKVYALT 418
Cdd:COG4913 339 RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAllEALEEELEALEEALAEAEAALRDLR 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 419 KERDTLRRE-----QNKKSDAAALLKEKDEIINQVMAEGEEL-------------SKKQAAQEAQIRKLR---------- 470
Cdd:COG4913 419 RELRELEAEiasleRRKSNIPARLLALRDALAEALGLDEAELpfvgelievrpeeERWRGAIERVLGGFAltllvppehy 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 471 AQIREAEEEKKgLITKLQSEenKVESIKRDKTAT--------EKLlqeTIEKH------QAELTSQKDY----------- 525
Cdd:COG4913 499 AAALRWVNRLH-LRGRLVYE--RVRTGLPDPERPrldpdslaGKL---DFKPHpfrawlEAELGRRFDYvcvdspeelrr 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 526 -----------YSNALAAAKEAQALAEER-----TNNEARSELENRLKEAGERESML---VQALEELRQTLSKKEQQAVY 586
Cdd:COG4913 573 hpraitragqvKGNGTRHEKDDRRRIRSRyvlgfDNRAKLAALEAELAELEEELAEAeerLEALEAELDALQERREALQR 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 587 REDMFRGEI--EDLQRRYQASERRCEELitqvpESTRPLLRQIEA-MQEAESKAATAEERERSVNERLSQTLSRINVLEA 663
Cdd:COG4913 653 LAEYSWDEIdvASAEREIAELEAELERL-----DASSDDLAALEEqLEELEAELEELEEELDELKGEIGRLEKELEQAEE 727
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 12324587 664 QLSLNFSLPSSPIQLSCLRAEQgQLSKSLEKERQRAAENRQEYlAAKEEADTLEGRANQLEVEIRELRRKHKQE 737
Cdd:COG4913 728 ELDELQDRLEAAEDLARLELRA-LLEERFAAALGDAVERELRE-NLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
21-255 |
9.13e-03 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 39.77 E-value: 9.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 21 NKFQESVKNIEKNFDnalgfDDKSDSAAEDAASSMWPPAVDTKSlfdpvmsfmgNTSDEKPDTLEDSVRTENPSQIEQKE 100
Cdd:PRK08581 47 NDDETSKDTSSKDTD-----KADNNNTSNQDNNDKKFSTIDSST----------SDSNNIIDFIYKNLPQTNINQLLTKN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 101 EEAGSVKLATEQAVSVEANKETNVRREADQADNPEVTETVVLDPKDDEPQSqillEESSEYSLQTPESSGYKTSLQPNEK 180
Cdd:PRK08581 112 KYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTD----TQSSKQDKADNQKAPSSNNTKPSTS 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12324587 181 LEmtASQDSQPEQPKSEAEESQPEDSEAKEVTVENKDTVHSPVLDGQHKITYMDETTNEQEILGENLEGRTSSKN 255
Cdd:PRK08581 188 NK--QPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKTETSN 260
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
463-732 |
9.54e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 463 EAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLL-------QETIEKHQAELTSQKDyysnalaaaKE 535
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLprlnllaDETLADRVEEIREQLD---------EA 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 536 AQALAEERTNNEARSELE---NRLKEAGERESMLVQALEELRQTLSKKEQQAvyredmfRGEIEDLQRR----YQASERR 608
Cdd:PRK04863 907 EEAKRFVQQHGNALAQLEpivSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQA-------FALTEVVQRRahfsYEDAAEM 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12324587 609 CEElITQVPESTRPLLRQIEAMQ-EAESKAATAEERERSVNERLSQTLSRINVL-----EAQLSL-NFSLPSSPIQLSCL 681
Cdd:PRK04863 980 LAK-NSDLNEKLRQRLEQAEQERtRAREQLRQAQAQLAQYNQVLASLKSSYDAKrqmlqELKQELqDLGVPADSGAEERA 1058
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 12324587 682 RAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRR 732
Cdd:PRK04863 1059 RARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
|
|
| |
