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Conserved domains on  [gi|7304100|gb|AAF59138|]
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sandman [Drosophila melanogaster]

Protein Classification

potassium channel family protein( domain architecture ID 10545436)

potassium channel family protein spans the cell membrane to form a conduction pathway or pore, through which selective ions such as potassium, sodium, and calcium, translocate across cell membranes

Gene Ontology:  GO:0005267|GO:0034220|GO:0005216|GO:0071805|GO:0016020
PubMed:  15816170|9525859|11836519|11178249|1772658
SCOP:  4000034
TCDB:  1.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 127-183 2.60e-16

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


:

Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 73.07  E-value: 2.60e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 7304100    127 WSFSGAFLYSLTVITTIGYGNITPHSECGKLVTILYAIIGMPLFLLYLSNIGDVLAK 183
Cdd:pfam07885  22 WSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILIGIPLFAIFLAVLGRFLTE 78
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 292-376 3.05e-07

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


:

Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 47.65  E-value: 3.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7304100    292 FVMVGYILWGALLF---GRWEdWNYLDGSYFCLISLSSIGFGDLVPGDrviTADRdkvevsfILCAIYLLLGMAVIAMCF 368
Cdd:pfam07885   1 IVLLLVLIFGTVYYlleEGWE-WSFLDALYFSFVTLTTVGYGDIVPLT---DAGR-------LFTIFYILIGIPLFAIFL 69


                  ....*...
gi 7304100    369 NLMQEQVV 376
Cdd:pfam07885  70 AVLGRFLT 77
 
Name Accession Description Interval E-value
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 127-183 2.60e-16

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 73.07  E-value: 2.60e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 7304100    127 WSFSGAFLYSLTVITTIGYGNITPHSECGKLVTILYAIIGMPLFLLYLSNIGDVLAK 183
Cdd:pfam07885  22 WSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILIGIPLFAIFLAVLGRFLTE 78
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 292-376 3.05e-07

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 47.65  E-value: 3.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7304100    292 FVMVGYILWGALLF---GRWEdWNYLDGSYFCLISLSSIGFGDLVPGDrviTADRdkvevsfILCAIYLLLGMAVIAMCF 368
Cdd:pfam07885   1 IVLLLVLIFGTVYYlleEGWE-WSFLDALYFSFVTLTTVGYGDIVPLT---DAGR-------LFTIFYILIGIPLFAIFL 69


                  ....*...
gi 7304100    369 NLMQEQVV 376
Cdd:pfam07885  70 AVLGRFLT 77
PRK10537 PRK10537
voltage-gated potassium channel protein;
128-177 9.26e-04

voltage-gated potassium channel protein;


Pssm-ID: 236711 [Multi-domain]  Cd Length: 393  Bit Score: 41.16  E-value: 9.26e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 7304100   128 SFSGAFLYSLTVITTIGYGNITPHSECGKLVTILYAIIGMPLFLLYLSNI 177
Cdd:PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAI 217
 
Name Accession Description Interval E-value
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 127-183 2.60e-16

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 73.07  E-value: 2.60e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 7304100    127 WSFSGAFLYSLTVITTIGYGNITPHSECGKLVTILYAIIGMPLFLLYLSNIGDVLAK 183
Cdd:pfam07885  22 WSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILIGIPLFAIFLAVLGRFLTE 78
Ion_trans_2 pfam07885
Ion channel; This family includes the two membrane helix type ion channels found in bacteria.
 292-376 3.05e-07

Ion channel; This family includes the two membrane helix type ion channels found in bacteria.


Pssm-ID: 462301 [Multi-domain]  Cd Length: 78  Bit Score: 47.65  E-value: 3.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7304100    292 FVMVGYILWGALLF---GRWEdWNYLDGSYFCLISLSSIGFGDLVPGDrviTADRdkvevsfILCAIYLLLGMAVIAMCF 368
Cdd:pfam07885   1 IVLLLVLIFGTVYYlleEGWE-WSFLDALYFSFVTLTTVGYGDIVPLT---DAGR-------LFTIFYILIGIPLFAIFL 69


                  ....*...
gi 7304100    369 NLMQEQVV 376
Cdd:pfam07885  70 AVLGRFLT 77
IRK pfam01007
Inward rectifier potassium channel transmembrane domain;
128-161 8.33e-04

Inward rectifier potassium channel transmembrane domain;


Pssm-ID: 460023  Cd Length: 141  Bit Score: 39.47  E-value: 8.33e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 7304100    128 SFSGAFLYSLTVITTIGYGNITPHSECGKLVTIL 161
Cdd:pfam01007  83 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLL 116
PRK10537 PRK10537
voltage-gated potassium channel protein;
128-177 9.26e-04

voltage-gated potassium channel protein;


Pssm-ID: 236711 [Multi-domain]  Cd Length: 393  Bit Score: 41.16  E-value: 9.26e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 7304100   128 SFSGAFLYSLTVITTIGYGNITPHSECGKLVTILYAIIGMPLFLLYLSNI 177
Cdd:PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAI 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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