|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-428 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 660.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 2 VLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFK 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 82 ELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYG 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 162 SYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVD 241
Cdd:TIGR01425 161 SYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 242 IGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELKLDGND-ELLE 320
Cdd:TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEkTLIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 321 KIKHGHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDgaKLFSKQP 400
Cdd:TIGR01425 321 HLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA--KTMLKDP 398
|
410 420
....*....|....*....|....*...
gi 7295492 401 NRCVRVAQGAGVMEREVKELIAHYTKFS 428
Cdd:TIGR01425 399 SRIRRVARGSGRDIREVNELLEQYKLFA 426
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-443 |
3.26e-148 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 431.17 E-value: 3.26e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 6 LGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 86 LVDPGVKPyQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTE 165
Cdd:PRK00771 81 LLGEETEP-LVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 166 IDPVVIAQDGVDMFKREgfEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSV 245
Cdd:PRK00771 160 KDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 246 IITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNE-LKLDGNDELLEKIKH 324
Cdd:PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEaLDEEEEEKDVEKMMK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 325 GHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDfMTKGGEQESMARVKRMMTMMDSMSDNELDNRD--GAKlfskqpnR 402
Cdd:PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELENPEiiNAS-------R 389
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 7295492 403 CVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQ 443
Cdd:PRK00771 390 IRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKGKMGK 430
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
2.02e-141 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 404.65 E-value: 2.02e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 7295492 262 AVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-424 |
2.27e-126 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 375.13 E-value: 2.27e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 6 LGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVK 85
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHDELVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 86 LVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTE 165
Cdd:COG0541 85 LLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 166 IDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSV 245
Cdd:COG0541 165 KDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALGLTGV 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 246 IITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNElKLDGND--ELLEKIK 323
Cdd:COG0541 245 ILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQE-AIDEEEaeKLAKKLK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 324 HGHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGE--QESMARVKrmmtmmdsmsdneldnrdgAKLFS---- 397
Cdd:COG0541 324 KGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDidEKELKRIE-------------------AIINSmtpe 384
|
410 420 430
....*....|....*....|....*....|....
gi 7295492 398 --KQPN-----RCVRVAQGAGVMEREVKELIAHY 424
Cdd:COG0541 385 erRNPDiingsRKRRIAKGSGTTVQDVNRLLKQF 418
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
2.71e-102 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 304.85 E-value: 2.71e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 7295492 262 AVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
102-296 |
6.57e-88 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 268.12 E-value: 6.57e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKS-CLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFK 180
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKLKGGKKvLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 181 REGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGAL 260
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAAL 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 7295492 261 SAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLG 296
Cdd:smart00962 162 SIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-428 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 660.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 2 VLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFK 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 82 ELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYG 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 162 SYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVD 241
Cdd:TIGR01425 161 SYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 242 IGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELKLDGND-ELLE 320
Cdd:TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEkTLIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 321 KIKHGHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDgaKLFSKQP 400
Cdd:TIGR01425 321 HLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA--KTMLKDP 398
|
410 420
....*....|....*....|....*...
gi 7295492 401 NRCVRVAQGAGVMEREVKELIAHYTKFS 428
Cdd:TIGR01425 399 SRIRRVARGSGRDIREVNELLEQYKLFA 426
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-443 |
3.26e-148 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 431.17 E-value: 3.26e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 6 LGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 86 LVDPGVKPyQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTE 165
Cdd:PRK00771 81 LLGEETEP-LVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 166 IDPVVIAQDGVDMFKREgfEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSV 245
Cdd:PRK00771 160 KDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 246 IITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNE-LKLDGNDELLEKIKH 324
Cdd:PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEaLDEEEEEKDVEKMMK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 325 GHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDfMTKGGEQESMARVKRMMTMMDSMSDNELDNRD--GAKlfskqpnR 402
Cdd:PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELENPEiiNAS-------R 389
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 7295492 403 CVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQ 443
Cdd:PRK00771 390 IRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKGKMGK 430
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
2.02e-141 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 404.65 E-value: 2.02e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 7295492 262 AVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-424 |
2.27e-126 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 375.13 E-value: 2.27e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 6 LGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVK 85
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHDELVE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 86 LVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTE 165
Cdd:COG0541 85 LLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 166 IDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSV 245
Cdd:COG0541 165 KDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALGLTGV 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 246 IITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNElKLDGND--ELLEKIK 323
Cdd:COG0541 245 ILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQE-AIDEEEaeKLAKKLK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 324 HGHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGE--QESMARVKrmmtmmdsmsdneldnrdgAKLFS---- 397
Cdd:COG0541 324 KGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDidEKELKRIE-------------------AIINSmtpe 384
|
410 420 430
....*....|....*....|....*....|....
gi 7295492 398 --KQPN-----RCVRVAQGAGVMEREVKELIAHY 424
Cdd:COG0541 385 erRNPDiingsRKRRIAKGSGTTVQDVNRLLKQF 418
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
6-433 |
2.07e-103 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 316.54 E-value: 2.07e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 6 LGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVK 85
Cdd:TIGR00959 4 LSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 86 LVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCA-DTFRAGAYDQVKQNATKARIPFYGSYT 164
Cdd:TIGR00959 84 ILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAcDLYRPAAIEQLKVLGQQVGVPVFALGK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 165 EIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGS 244
Cdd:TIGR00959 164 GQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 245 VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELkLDGND--ELLEKI 322
Cdd:TIGR00959 244 VVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEV-VDEEEakKLAEKM 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 323 KHGHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKlfskqPNR 402
Cdd:TIGR00959 323 KKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILN-----PSR 397
|
410 420 430
....*....|....*....|....*....|.
gi 7295492 403 CVRVAQGAGVMEREVKELIAHYTKFSAVVKK 433
Cdd:TIGR00959 398 RKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
2.71e-102 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 304.85 E-value: 2.71e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 7295492 262 AVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
102-294 |
8.44e-95 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 285.81 E-value: 8.44e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALS 261
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 7295492 262 AVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
Cdd:cd03115 161 IVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
102-296 |
6.57e-88 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 268.12 E-value: 6.57e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKS-CLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFK 180
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKLKGGKKvLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 181 REGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGAL 260
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAAL 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 7295492 261 SAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLG 296
Cdd:smart00962 162 SIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-285 |
1.45e-61 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 200.13 E-value: 1.45e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180
....*....|....*....|....
gi 7295492 262 AVAATQSPIIFIGTGEHIDDLEPF 285
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
9-296 |
3.43e-61 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 203.41 E-value: 3.43e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 9 KITTALHSLSKATVINEEALNSmLKEIcaaLLEADVNIRLVKQLRENVRAVIDFDEmaggLNKRRMIQSAVFKELVKLVD 88
Cdd:PRK10416 30 NFGEGINGLFAKKKIDEDLLEE-LEEL---LIEADVGVETTEEIIEELRERVKRKN----LKDPEELKELLKEELAEILE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 89 PGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNwKSCLVCA-DTFRAGAYDQVKQNATKARIPFYGSYTEID 167
Cdd:PRK10416 102 PVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAAgDTFRAAAIEQLQVWGERVGVPVIAQKEGAD 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 168 PVVIAQDGVDMFKREGFEMIIVDTSGR-HKQEEsLFEEML--------AVSNAvsPDNIIFVMDATIGQACEAQAKAFKD 238
Cdd:PRK10416 181 PASVAFDAIQAAKARGIDVLIIDTAGRlHNKTN-LMEELKkikrvikkADPDA--PHEVLLVLDATTGQNALSQAKAFHE 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 7295492 239 KVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLG 296
Cdd:PRK10416 258 AVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
6-296 |
5.13e-61 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 202.18 E-value: 5.13e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 6 LGRKITTALhslSKATVINEEALNsmlkEICAALLEADVNI----RLVKQLRENVRAvidfdemaGGLNKRRMIQSAVFK 81
Cdd:COG0552 16 LGEKLKSLF---SGKKKIDEDLLE----ELEELLIEADVGVetteEIIEELRERVKR--------KKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 82 ELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYG 161
Cdd:COG0552 81 ELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 162 SYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGR-HKQEEsLFEEM------LAVSNAVSPDNIIFVMDATIGQACEAQAK 234
Cdd:COG0552 161 QKEGADPAAVAFDAIQAAKARGADVVIIDTAGRlHNKKN-LMEELkkikrvIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7295492 235 AFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLG 296
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
19-296 |
2.00e-56 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 191.34 E-value: 2.00e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 19 KATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGvKPYQPIK 98
Cdd:PRK14974 54 KITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVG-DLFDLIE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 99 GKAN-----VVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPF----YGSyteiDPV 169
Cdd:PRK14974 133 EIKSkgkpvVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVikhkYGA----DPA 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 170 VIAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITK 249
Cdd:PRK14974 209 AVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTK 288
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 7295492 250 LDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLG 296
Cdd:PRK14974 289 VDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
23-295 |
1.30e-55 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 187.46 E-value: 1.30e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 23 INEEALNsmlkEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGKA 101
Cdd:TIGR00064 2 DDEDFFE----ELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELiVEENKP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:TIGR00064 78 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAK 255
Cdd:TIGR00064 158 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAK 237
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 7295492 256 GGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295
Cdd:TIGR00064 238 GGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
102-294 |
3.45e-53 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 178.15 E-value: 3.45e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAK 255
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 7295492 256 GGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
8-296 |
1.77e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 141.16 E-value: 1.77e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 8 RKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEmagglnkrrmIQSAVFKELVKLV 87
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEE----------AWRALLEALARRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 88 DPgvkPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKS-CLVCADTFRAGAYDQVKQNATKARIPFYGSYTEI 166
Cdd:COG1419 154 PV---AEDPLLDEGGVIALVGPTGVGKTTTIAKLAARFVLRGKKKvALITTDTYRIGAVEQLKTYARILGVPVEVAYDPE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 167 DpvviAQDGVDMFKreGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATI-GQACEAQAKAFKDkVDIGSV 245
Cdd:COG1419 231 E----LKEALERLR--DKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSATTkYEDLKEIVEAFSS-LGLDGL 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 7295492 246 IITKLDGHAKGGGALSAVAATQSPIIFIGTGEHI-DDLEPFKTKPFVSKLLG 296
Cdd:COG1419 304 ILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
103-294 |
6.58e-30 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 116.17 E-value: 6.58e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 103 VVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKRE 182
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 183 GFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAF----------KDKVDIGSVIITKLDG 252
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFnqaladyspsDNPRLIDGIVLTKFDT 161
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 7295492 253 -HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
103-294 |
1.13e-25 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 103.78 E-value: 1.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 103 VVMFVGLQGSGKTTTCTKLAYHYQKRNWKSC-LVCADTFRAGAYDQVKqnatkaripfygSYTEI--DPVVIAQDGVDMF 179
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVaLITTDTYRIGAVEQLK------------TYAEImgIPVEVAEDPEDLA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 180 KR----EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATiGQACEAQ--AKAFKDkVDIGSVIITKLDGH 253
Cdd:cd17873 70 DAlerlSDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSAT-TKAKDLKeiIERFSP-LGYRGLILTKLDET 147
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 7295492 254 AKGGGALSAVAATQSPIIFIGTGEHI-DDLEPFKTKPFVSKL 294
Cdd:cd17873 148 TSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
19-296 |
9.66e-23 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 100.35 E-value: 9.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 19 KATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDfdemagglNKRRMIQSAVFKELVKLVDPgvkPYQPIK 98
Cdd:PRK05703 150 LSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMP--------PRERTAWRYLLELLANMIPV---RVEDIL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 99 GKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKS--CLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDpvviAQDGV 176
Cdd:PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKkvALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE----LAKAL 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 177 DMFKRegFEMIIVDTSGRHKQEESLFEEMLA-VSNAVSPDNIIFVMDATIG-QACEAQAKAFKdKVDIGSVIITKLDGHA 254
Cdd:PRK05703 295 EQLRD--CDVILIDTAGRSQRDKRLIEELKAlIEFSGEPIDVYLVLSATTKyEDLKDIYKHFS-RLPLDGLIFTKLDETS 371
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 7295492 255 KGGGALSAVAATQSPIIFIGTGEHI-DDLEPFKTKPFVSKLLG 296
Cdd:PRK05703 372 SLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
327-428 |
1.26e-17 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 77.82 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 327 FTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQdfmtKGGEQESMARVKRMMTMMDSMSDNELDNRDgaklfSKQPNRCVRV 406
Cdd:pfam02978 2 FTLRDFLEQLQQIKKMGPLSKILSMIPGMGK----KDDDIDSEKKLKRIEAIIDSMTPKERDNPD-----IINASRKRRI 72
|
90 100
....*....|....*....|..
gi 7295492 407 AQGAGVMEREVKELIAHYTKFS 428
Cdd:pfam02978 73 ARGSGTSVQEVNRLLKQFKQMK 94
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
3.15e-17 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 75.97 E-value: 3.15e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7295492 6 LGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEmagGLNKRRMIQSAVFKEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEK---KLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
1.67e-13 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 65.65 E-value: 1.67e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7295492 10 ITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFdEMAGGLNKRRMIQSAVFKELVKLV 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
3-193 |
3.50e-13 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 70.06 E-value: 3.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 3 LADLGRKITTALHSLSKatvineEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEmagglnkrrmIQSAVFKE 82
Cdd:TIGR03499 113 LEALRELLERLLAGLAW------LQRPPERAKLYERLLEAGVSEELARELLEKLPEDADAED----------AWRWLREA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 83 LVKLVdPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHY--QKRNWKSCLVCADTFRAGAYDQVKqnatkaripfy 160
Cdd:TIGR03499 177 LEGML-PVKPEEDPILEQGGVIALVGPTGVGKTTTLAKLAARFalEHGKKKVALITTDTYRIGAVEQLK----------- 244
|
170 180 190
....*....|....*....|....*....|....*....
gi 7295492 161 gSYTEI--DPVVIAQDGVDM----FKREGFEMIIVDTSG 193
Cdd:TIGR03499 245 -TYAEIlgIPVKVARDPKELrealDRLRDKDLILIDTAG 282
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
79-295 |
3.55e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 71.53 E-value: 3.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 79 VFKELVKlVDPGVKPYQPiKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSC-LVCADTFRAGAYDQVKQNATKARI 157
Cdd:PRK12724 203 YLEERVS-VDSDLFSGTG-KNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVsLYTTDNYRIAAIEQLKRYADTMGM 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 158 PFYgsyteidPVVIAQDGVDMFKREGFEMIIVDTSG-RHKQEESL---------------FEEMLAVSNAVSPDNIIFVM 221
Cdd:PRK12724 281 PFY-------PVKDIKKFKETLARDGSELILIDTAGySHRNLEQLermqsfyscfgekdsVENLLVLSSTSSYHHTLTVL 353
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7295492 222 DATigqaceaqakafkDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIddlePFKTKPFVSKLL 295
Cdd:PRK12724 354 KAY-------------ESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV----PFDILNATKNLM 410
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
25-281 |
6.99e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 70.15 E-value: 6.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 25 EEALNSMLKEICAALLEADVNIRLVKQLRENV------RAVIDF---DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ 95
Cdd:PRK12726 116 EEELSAMRLELAALNRELAVKMREEREQNSDFvkflkgRGISDTyvaDFMQAGRKQFKQVETAHLDDITDWFVPYLSGKL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 96 PIKGKAN-----VVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFygsYTEIDPVV 170
Cdd:PRK12726 196 AVEDSFDlsnhrIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL---IVATSPAE 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 171 IAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKL 250
Cdd:PRK12726 273 LEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKM 352
|
250 260 270
....*....|....*....|....*....|.
gi 7295492 251 DGHAKGGGALSAVAATQSPIIFIGTGEHIDD 281
Cdd:PRK12726 353 DETTRIGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
103-295 |
4.93e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 65.21 E-value: 4.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 103 VVMFVGLQGSGKTTTCTKLAYHYQKRNW--KSCLVCADTFRAGAYDQVkqnatkaRIpfYGSYTEIdPVVIAQDGVDMF- 179
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGadQLALLTTDSFRIGALEQL-------RI--YGRILGV-PVHAVKDAADLRf 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 180 ---KREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATI-GQACEAQAKAFKDKV--DIGSVIITKLDGH 253
Cdd:PRK14723 257 alaALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAShGDTLNEVVHAYRHGAgeDVDGCIITKLDEA 336
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 7295492 254 AKGGGALSAVAATQSPIIFIGTGEHI-DDLEPFKTKPFVSKLL 295
Cdd:PRK14723 337 THLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
104-279 |
6.46e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 64.32 E-value: 6.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 104 VMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNatkarIPFYGSyteidPVVIAQDGVDM----- 178
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY-----VKTIGF-----EVIAVRDEAAMtralt 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 179 -FKREG-FEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQ-AKAFKDkVDIGSVIITKLDGHAK 255
Cdd:PRK11889 314 yFKEEArVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETAS 392
|
170 180
....*....|....*....|....
gi 7295492 256 GGGALSAVAATQSPIIFIGTGEHI 279
Cdd:PRK11889 393 SGELLKIPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
100-293 |
2.94e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 62.05 E-value: 2.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 100 KANVVMFVGLQGSGKTTTCTKLAYHYQKR--NWKSCLVCADTFRAGAYDQVKqnatkaripFYGSYTEIdPVVIAQDGVD 177
Cdd:PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLR---------IFGKILGV-PVHAVKDGGD 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 178 M----FKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDAT--------IGQACEAQAKAFKDKV-DIGS 244
Cdd:PRK14722 206 LqlalAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATshgdtlneVVQAYRSAAGQPKAALpDLAG 285
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 7295492 245 VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSK 293
Cdd:PRK14722 286 CILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLK 334
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
91-282 |
8.39e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 61.16 E-value: 8.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 91 VKPYQPIKgKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKS--CLVCADTFRAGAYDQVKQNATKARIPFYgsytEIDP 168
Cdd:PRK12727 341 VAPVDPLE-RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRdvALVTTDTQRVGGREQLHSYGRQLGIAVH----EADS 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 169 vviAQDGVDMFKR-EGFEMIIVDTSGRHKQEESLFEEM--LAVSNAVS-----PDNIIFV-MDATIGQACEAQAKAfkdk 239
Cdd:PRK12727 416 ---AESLLDLLERlRDYKLVLIDTAGMGQRDRALAAQLnwLRAARQVTsllvlPANAHFSdLDEVVRRFAHAKPQG---- 488
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 7295492 240 vdigsVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHI-DDL 282
Cdd:PRK12727 489 -----VVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVpDDL 527
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
100-279 |
1.14e-09 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 59.37 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 100 KANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVkQNATKArIPFygsyteidPVVIAQDGVDM- 178
Cdd:PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL-QDYVKT-IGF--------EVIAVRDEAAMt 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 179 -----FKREG-FEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQ-AKAFKDkVDIGSVIITKLD 251
Cdd:PRK06731 144 raltyFKEEArVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFD 222
|
170 180
....*....|....*....|....*...
gi 7295492 252 GHAKGGGALSAVAATQSPIIFIGTGEHI 279
Cdd:PRK06731 223 ETASSGELLKIPAVSSAPIVLMTDGQDV 250
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
102-212 |
2.28e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.23 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 102 NVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQnatkarIPFYGSYTEIDPVVIAQDGVDMFKR 181
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL------IIVGGKKASGSGELRLRLALALARK 76
|
90 100 110
....*....|....*....|....*....|.
gi 7295492 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAV 212
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRL 107
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
100-282 |
1.53e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 53.80 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 100 KANVVMFVGLQGSGKTTTCTKLAYHYQKRNW--KSCLVCADTFRAGAYDQVKqnatkaripFYG--------SYTEIDPV 169
Cdd:PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGadKVALLTTDSYRIGGHEQLR---------IYGkllgvsvrSIKDIADL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 170 VIAQDGVdmfkrEGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDAT-IGQACEAQAKAFKdKVDIGSVIIT 248
Cdd:PRK14721 261 QLMLHEL-----RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATsSGDTLDEVISAYQ-GHGIHGCIIT 334
|
170 180 190
....*....|....*....|....*....|....*
gi 7295492 249 KLDGHAKGGGALSAVAATQSPIIFIGTGEHI-DDL 282
Cdd:PRK14721 335 KVDEAASLGIALDAVIRRKLVLHYVTNGQKVpEDL 369
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
100-323 |
1.81e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 43.74 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 100 KANVVMFVGLQGSGKTTTCTKLAYHY----QKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYG--SYTEI-DPVVIA 172
Cdd:PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAieSFKDLkEEITQS 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 173 QDgvdmfkregFEMIIVDTSGRHKQEESLFEEMLAVSNAVSpdniifvMDATIGQACEAQAKAfKDKVDI---------G 243
Cdd:PRK12723 253 KD---------FDLVLVDTIGKSPKDFMKLAEMKELLNACG-------RDAEFHLAVSSTTKT-SDVKEIfhqfspfsyK 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 244 SVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEhiddlepfktkpFVSKLLGMGDIEGLIDKVNELKLDGNDELLEKIK 323
Cdd:PRK12723 316 TVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQ------------IVPHNISIAEPLTFIKKINGYRISDDAEFIRKLK 383
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
107-276 |
6.06e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.18 E-value: 6.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 107 VGLQGSGKTTTCTKLAYHYQKRNWKS--CLVCADTFRAGAYDQVkqnatkaRIpfYGSYTEIdPVVIAQDGVDM------ 178
Cdd:PRK06995 262 MGPTGVGKTTTTAKLAARCVMRHGASkvALLTTDSYRIGGHEQL-------RI--YGKILGV-PVHAVKDAADLrlalse 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7295492 179 --FKRegfeMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATI-GQACEAQAKAFKDKvDIGSVIITKLDGHAK 255
Cdd:PRK06995 332 lrNKH----IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATShGDTLNEVVQAYRGP-GLAGCILTKLDEAAS 406
|
170 180
....*....|....*....|.
gi 7295492 256 GGGALSAVAATQSPIIFIGTG 276
Cdd:PRK06995 407 LGGALDVVIRYKLPLHYVSNG 427
|
|
| |
