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F3M18.5 [Arabidopsis thaliana]
OPA3 family protein( domain architecture ID 10537153)
OPA3 family protein similar to human optic atrophy 3 protein (OPA3) that may play some role in mitochondrial processes
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
OPA3 | pfam07047 | Optic atrophy 3 protein (OPA3); This family consists of several optic atrophy 3 (OPA3) ... |
6-126 | 2.03e-55 | |||
Optic atrophy 3 protein (OPA3); This family consists of several optic atrophy 3 (OPA3) proteins. OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity. : Pssm-ID: 462072 [Multi-domain] Cd Length: 122 Bit Score: 170.38 E-value: 2.03e-55
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PilO super family | cl42016 | Type IV pilus assembly protein PilO [Cell motility, Extracellular structures]; |
103-159 | 4.11e-03 | |||
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures]; The actual alignment was detected with superfamily member COG3167: Pssm-ID: 442400 [Multi-domain] Cd Length: 202 Bit Score: 36.46 E-value: 4.11e-03
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Name | Accession | Description | Interval | E-value | |||
OPA3 | pfam07047 | Optic atrophy 3 protein (OPA3); This family consists of several optic atrophy 3 (OPA3) ... |
6-126 | 2.03e-55 | |||
Optic atrophy 3 protein (OPA3); This family consists of several optic atrophy 3 (OPA3) proteins. OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity. Pssm-ID: 462072 [Multi-domain] Cd Length: 122 Bit Score: 170.38 E-value: 2.03e-55
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ZIP_MycBP-like | cd21937 | leucine zipper domain found in c-Myc-binding protein and similar proteins; MycBP, also called ... |
110-141 | 1.02e-05 | |||
leucine zipper domain found in c-Myc-binding protein and similar proteins; MycBP, also called associate of Myc 1 (AMY-1), is a novel c-Myc binding protein that may control the transcriptional activity of Myc. It stimulates the activation of E box-dependent transcription by Myc. This model corresponds to the conserved region that shows high sequence similarity with the leucine zipper (ZIP) domain located at the C-terminus of TGF-beta-stimulated clone-22 domain (TSC22D) family transcription factors. The first helix of ZIP is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription. Pssm-ID: 409277 [Multi-domain] Cd Length: 53 Bit Score: 41.00 E-value: 1.02e-05
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FtsB | COG2919 | Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning]; |
85-162 | 7.15e-05 | |||
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442163 [Multi-domain] Cd Length: 96 Bit Score: 39.86 E-value: 7.15e-05
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PRK12704 | PRK12704 | phosphodiesterase; Provisional |
97-145 | 2.91e-03 | |||
phosphodiesterase; Provisional Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 37.07 E-value: 2.91e-03
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PilO | COG3167 | Type IV pilus assembly protein PilO [Cell motility, Extracellular structures]; |
103-159 | 4.11e-03 | |||
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures]; Pssm-ID: 442400 [Multi-domain] Cd Length: 202 Bit Score: 36.46 E-value: 4.11e-03
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Name | Accession | Description | Interval | E-value | |||
OPA3 | pfam07047 | Optic atrophy 3 protein (OPA3); This family consists of several optic atrophy 3 (OPA3) ... |
6-126 | 2.03e-55 | |||
Optic atrophy 3 protein (OPA3); This family consists of several optic atrophy 3 (OPA3) proteins. OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity. Pssm-ID: 462072 [Multi-domain] Cd Length: 122 Bit Score: 170.38 E-value: 2.03e-55
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ZIP_MycBP-like | cd21937 | leucine zipper domain found in c-Myc-binding protein and similar proteins; MycBP, also called ... |
110-141 | 1.02e-05 | |||
leucine zipper domain found in c-Myc-binding protein and similar proteins; MycBP, also called associate of Myc 1 (AMY-1), is a novel c-Myc binding protein that may control the transcriptional activity of Myc. It stimulates the activation of E box-dependent transcription by Myc. This model corresponds to the conserved region that shows high sequence similarity with the leucine zipper (ZIP) domain located at the C-terminus of TGF-beta-stimulated clone-22 domain (TSC22D) family transcription factors. The first helix of ZIP is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. Thus, the DNA-binding capability of the ZIP domain is not obvious. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription. Pssm-ID: 409277 [Multi-domain] Cd Length: 53 Bit Score: 41.00 E-value: 1.02e-05
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FtsB | COG2919 | Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning]; |
85-162 | 7.15e-05 | |||
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442163 [Multi-domain] Cd Length: 96 Bit Score: 39.86 E-value: 7.15e-05
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PRK12704 | PRK12704 | phosphodiesterase; Provisional |
97-145 | 2.91e-03 | |||
phosphodiesterase; Provisional Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 37.07 E-value: 2.91e-03
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PilO | COG3167 | Type IV pilus assembly protein PilO [Cell motility, Extracellular structures]; |
103-159 | 4.11e-03 | |||
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures]; Pssm-ID: 442400 [Multi-domain] Cd Length: 202 Bit Score: 36.46 E-value: 4.11e-03
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Blast search parameters | ||||
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