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Conserved domains on  [gi|6503041|gb|AAF14560|]
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kinesin-like protein 2, partial [Danio rerio]

Protein Classification

kinesin family protein( domain architecture ID 10102659)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; similar to carboxy-terminal kinesins that contains a C-terminal domain responsible for the motor activity (it hydrolyzes ATP and binds microtubules)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
42-381 0e+00

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 531.01  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   42 KGNIRVFCRVRPLLTGNQS-DILHIQLPPHDNKALTLAKMEeshtgrttdtQKSYNFSFDRVFGPRSSQSEVFEEISLLV 120
Cdd:cd01366   1 KGNIRVFCRVRPLLPSEENeDTSHITFPDEDGQTIELTSIG----------AKQKEFSFDKVFDPEASQEDVFEEVSPLV 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  121 QSALDGYNVCCFAYGQTGSGKTFTMEGGEqeELWGVIPRAVQQIFKSAKALSEQGWQYTFTASFVEIYNETLRDLLYKGk 200
Cdd:cd01366  71 QSALDGYNVCIFAYGQTGSGKTYTMEGPP--ESPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPG- 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  201 PNKRPEHEIRKVS-NNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTARDSKCKS 279
Cdd:cd01366 148 NAPQKKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVG 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  280 MLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISPE 359
Cdd:cd01366 228 KLNLVDLAGSERLNKSGATGDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPA 307
                       330       340
                ....*....|....*....|..
gi 6503041  360 EESFSESLNSLRFASKVNDCVI 381
Cdd:cd01366 308 ESNLNETLNSLRFASKVNSCEL 329
 
Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
42-381 0e+00

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 531.01  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   42 KGNIRVFCRVRPLLTGNQS-DILHIQLPPHDNKALTLAKMEeshtgrttdtQKSYNFSFDRVFGPRSSQSEVFEEISLLV 120
Cdd:cd01366   1 KGNIRVFCRVRPLLPSEENeDTSHITFPDEDGQTIELTSIG----------AKQKEFSFDKVFDPEASQEDVFEEVSPLV 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  121 QSALDGYNVCCFAYGQTGSGKTFTMEGGEqeELWGVIPRAVQQIFKSAKALSEQGWQYTFTASFVEIYNETLRDLLYKGk 200
Cdd:cd01366  71 QSALDGYNVCIFAYGQTGSGKTYTMEGPP--ESPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPG- 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  201 PNKRPEHEIRKVS-NNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTARDSKCKS 279
Cdd:cd01366 148 NAPQKKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVG 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  280 MLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISPE 359
Cdd:cd01366 228 KLNLVDLAGSERLNKSGATGDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPA 307
                       330       340
                ....*....|....*....|..
gi 6503041  360 EESFSESLNSLRFASKVNDCVI 381
Cdd:cd01366 308 ESNLNETLNSLRFASKVNSCEL 329
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
44-386 1.15e-140

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 403.49  E-value: 1.15e-140
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041      44 NIRVFCRVRPLLTG--NQSDILHIQLPPHDNKALTLAKMEESHTGRTtdtqksynFSFDRVFGPRSSQSEVFEEISL-LV 120
Cdd:smart00129   1 NIRVVVRVRPLNKRekSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKK--------FTFDKVFDATASQEDVFEETAApLV 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     121 QSALDGYNVCCFAYGQTGSGKTFTMEGGEQEelWGVIPRAVQQIFKSAKALSEqGWQYTFTASFVEIYNETLRDLLykgK 200
Cdd:smart00129  73 DSVLEGYNATIFAYGQTGSGKTYTMIGTPDS--PGIIPRALKDLFEKIDKREE-GWQFSVKVSYLEIYNEKIRDLL---N 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     201 PNKRPeHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGE--NTARDSKCK 278
Cdd:smart00129 147 PSSKK-LEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKikNSSSGSGKA 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     279 SMLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALAN--KDSFVPYRNSKLTYLLQNCLGGNSKTLMFANI 356
Cdd:smart00129 226 SKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQhsKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANV 305
                          330       340       350
                   ....*....|....*....|....*....|
gi 6503041     357 SPEEESFSESLNSLRFASKVNDCVIGTASA 386
Cdd:smart00129 306 SPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
Kinesin pfam00225
Kinesin motor domain;
50-379 4.85e-131

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 378.84  E-value: 4.85e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     50 RVRPLLTGNQSDILHIQLPPHDNKAltlakmEESHTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEE-ISLLVQSALDGYN 128
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVDS------ETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEEtAKPLVESVLEGYN 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    129 VCCFAYGQTGSGKTFTMEGGEQEElwGVIPRAVQQIFKSAKALSEQgWQYTFTASFVEIYNETLRDLLYKGKPNKRPeHE 208
Cdd:pfam00225  75 VTIFAYGQTGSGKTYTMEGSDEQP--GIIPRALEDLFDRIQKTKER-SEFSVKVSYLEIYNEKIRDLLSPSNKNKRK-LR 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    209 IRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTA---RDSKCKSMLCLVD 285
Cdd:pfam00225 151 IREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRStggEESVKTGKLNLVD 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    286 LAGSERVQKSQ-SQGERFKEMTAINSSLTNLGIVIAALA-NKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISPEEESF 363
Cdd:pfam00225 231 LAGSERASKTGaAGGQRLKEAANINKSLSALGNVISALAdKKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNY 310
                         330
                  ....*....|....*.
gi 6503041    364 SESLNSLRFASKVNDC 379
Cdd:pfam00225 311 EETLSTLRFASRAKNI 326
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
44-375 1.16e-71

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 234.25  E-value: 1.16e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPL-LTGNQSDILHIQLPPHDNkALTLAKMEEShTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEE-ISLLVQ 121
Cdd:COG5059   6 NSPLKSRLSSRnEKSVSDIKSTIRIIPGEL-GERLINTSKK-SHVSLEKSKEGTYAFDKVFGPSATQEDVYEEtIKPLID 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  122 SALDGYNVCCFAYGQTGSGKTFTMEGGEQEElwGVIPRAVQQIFKSAKALSEqGWQYTFTASFVEIYNETLRDLLYKGKP 201
Cdd:COG5059  84 SLLLGYNCTVFAYGQTGSGKTYTMSGTEEEP--GIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEE 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  202 NKRpeheIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTARDSKCKSML 281
Cdd:COG5059 161 SLN----IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKL 236
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  282 CLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKD--SFVPYRNSKLTYLLQNCLGGNSKTLMFANISPE 359
Cdd:COG5059 237 SLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKksGHIPYRESKLTRLLQDSLGGNCNTRVICTISPS 316
                       330
                ....*....|....*.
gi 6503041  360 EESFSESLNSLRFASK 375
Cdd:COG5059 317 SNSFEETINTLKFASR 332
PLN03188 PLN03188
kinesin-12 family protein; Provisional
45-375 1.44e-51

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 185.52  E-value: 1.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     45 IRVFCRVRPLLTGNQSDILHIQLpphDNKALTLakmeeshTGRTtdtqksynFSFDRVFGPRSSQSEVFEEI-SLLVQSA 123
Cdd:PLN03188  100 VKVIVRMKPLNKGEEGEMIVQKM---SNDSLTI-------NGQT--------FTFDSIADPESTQEDIFQLVgAPLVENC 161
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    124 LDGYNVCCFAYGQTGSGKTFTMEG-----------GEQEelwGVIPRAVQQIFKSAK----ALSEQGWQYTFTASFVEIY 188
Cdd:PLN03188  162 LAGFNSSVFAYGQTGSGKTYTMWGpanglleehlsGDQQ---GLTPRVFERLFARINeeqiKHADRQLKYQCRCSFLEIY 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    189 NETLRDLLYKGKPNKrpehEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEg 268
Cdd:PLN03188  239 NEQITDLLDPSQKNL----QIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVE- 313
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    269 entardSKCKSM-----------LCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALAN-----KDSFVPYR 332
Cdd:PLN03188  314 ------SRCKSVadglssfktsrINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEisqtgKQRHIPYR 387
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 6503041    333 NSKLTYLLQNCLGGNSKTLMFANISPEEESFSESLNSLRFASK 375
Cdd:PLN03188  388 DSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQR 430
 
Name Accession Description Interval E-value
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
42-381 0e+00

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 531.01  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   42 KGNIRVFCRVRPLLTGNQS-DILHIQLPPHDNKALTLAKMEeshtgrttdtQKSYNFSFDRVFGPRSSQSEVFEEISLLV 120
Cdd:cd01366   1 KGNIRVFCRVRPLLPSEENeDTSHITFPDEDGQTIELTSIG----------AKQKEFSFDKVFDPEASQEDVFEEVSPLV 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  121 QSALDGYNVCCFAYGQTGSGKTFTMEGGEqeELWGVIPRAVQQIFKSAKALSEQGWQYTFTASFVEIYNETLRDLLYKGk 200
Cdd:cd01366  71 QSALDGYNVCIFAYGQTGSGKTYTMEGPP--ESPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPG- 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  201 PNKRPEHEIRKVS-NNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTARDSKCKS 279
Cdd:cd01366 148 NAPQKKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVG 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  280 MLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISPE 359
Cdd:cd01366 228 KLNLVDLAGSERLNKSGATGDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPA 307
                       330       340
                ....*....|....*....|..
gi 6503041  360 EESFSESLNSLRFASKVNDCVI 381
Cdd:cd01366 308 ESNLNETLNSLRFASKVNSCEL 329
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
44-386 1.15e-140

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 403.49  E-value: 1.15e-140
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041      44 NIRVFCRVRPLLTG--NQSDILHIQLPPHDNKALTLAKMEESHTGRTtdtqksynFSFDRVFGPRSSQSEVFEEISL-LV 120
Cdd:smart00129   1 NIRVVVRVRPLNKRekSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKK--------FTFDKVFDATASQEDVFEETAApLV 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     121 QSALDGYNVCCFAYGQTGSGKTFTMEGGEQEelWGVIPRAVQQIFKSAKALSEqGWQYTFTASFVEIYNETLRDLLykgK 200
Cdd:smart00129  73 DSVLEGYNATIFAYGQTGSGKTYTMIGTPDS--PGIIPRALKDLFEKIDKREE-GWQFSVKVSYLEIYNEKIRDLL---N 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     201 PNKRPeHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGE--NTARDSKCK 278
Cdd:smart00129 147 PSSKK-LEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKikNSSSGSGKA 225
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     279 SMLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALAN--KDSFVPYRNSKLTYLLQNCLGGNSKTLMFANI 356
Cdd:smart00129 226 SKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQhsKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANV 305
                          330       340       350
                   ....*....|....*....|....*....|
gi 6503041     357 SPEEESFSESLNSLRFASKVNDCVIGTASA 386
Cdd:smart00129 306 SPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
Kinesin pfam00225
Kinesin motor domain;
50-379 4.85e-131

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 378.84  E-value: 4.85e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     50 RVRPLLTGNQSDILHIQLPPHDNKAltlakmEESHTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEE-ISLLVQSALDGYN 128
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVDS------ETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEEtAKPLVESVLEGYN 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    129 VCCFAYGQTGSGKTFTMEGGEQEElwGVIPRAVQQIFKSAKALSEQgWQYTFTASFVEIYNETLRDLLYKGKPNKRPeHE 208
Cdd:pfam00225  75 VTIFAYGQTGSGKTYTMEGSDEQP--GIIPRALEDLFDRIQKTKER-SEFSVKVSYLEIYNEKIRDLLSPSNKNKRK-LR 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    209 IRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTA---RDSKCKSMLCLVD 285
Cdd:pfam00225 151 IREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRStggEESVKTGKLNLVD 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    286 LAGSERVQKSQ-SQGERFKEMTAINSSLTNLGIVIAALA-NKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISPEEESF 363
Cdd:pfam00225 231 LAGSERASKTGaAGGQRLKEAANINKSLSALGNVISALAdKKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNY 310
                         330
                  ....*....|....*.
gi 6503041    364 SESLNSLRFASKVNDC 379
Cdd:pfam00225 311 EETLSTLRFASRAKNI 326
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
44-376 5.81e-123

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 358.11  E-value: 5.81e-123
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPL-LTGNQSDILHIQLPPHDNkaLTLAKMEESHTGRTTdtqksynFSFDRVFGPRSSQSEVFEEI-SLLVQ 121
Cdd:cd00106   1 NVRVAVRVRPLnGREARSAKSVISVDGGKS--VVLDPPKNRVAPPKT-------FAFDAVFDSTSTQEEVYEGTaKPLVD 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  122 SALDGYNVCCFAYGQTGSGKTFTMEGGEQEELwGVIPRAVQQIFKSAKALSEQGWQYTFTASFVEIYNETLRDLLykgKP 201
Cdd:cd00106  72 SALEGYNGTIFAYGQTGSGKTYTMLGPDPEQR-GIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLL---SP 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  202 NKRPEHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTARD--SKCKS 279
Cdd:cd00106 148 VPKKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREKSgeSVTSS 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  280 MLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALA-NKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISP 358
Cdd:cd00106 228 KLNLVDLAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALAdGQNKHIPYRDSKLTRLLQDSLGGNSKTIMIACISP 307
                       330
                ....*....|....*...
gi 6503041  359 EEESFSESLNSLRFASKV 376
Cdd:cd00106 308 SSENFEETLSTLRFASRA 325
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
45-373 6.44e-103

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 307.72  E-value: 6.44e-103
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   45 IRVFCRVRPLLTGNQSDILHIQLpphdnkaltlaKMEESHTGRTTDTQKSynFSFDRVFGPRSSQSEVFEE-ISLLVQSA 123
Cdd:cd01372   3 VRVAVRVRPLLPKEIIEGCRICV-----------SFVPGEPQVTVGTDKS--FTFDYVFDPSTEQEEVYNTcVAPLVDGL 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  124 LDGYNVCCFAYGQTGSGKTFTMEGG----EQEELWGVIPRAVQQIFKSAKALSEQgWQYTFTASFVEIYNETLRDLLYKG 199
Cdd:cd01372  70 FEGYNATVLAYGQTGSGKTYTMGTAytaeEDEEQVGIIPRAIQHIFKKIEKKKDT-FEFQLKVSFLEIYNEEIRDLLDPE 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  200 KPNKRPEHeIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIE-----GENTARD 274
Cdd:cd01372 149 TDKKPTIS-IREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEqtkknGPIAPMS 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  275 SKCK-----SMLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKD---SFVPYRNSKLTYLLQNCLGG 346
Cdd:cd01372 228 ADDKnstftSKFHFVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESkkgAHVPYRDSKLTRLLQDSLGG 307
                       330       340
                ....*....|....*....|....*..
gi 6503041  347 NSKTLMFANISPEEESFSESLNSLRFA 373
Cdd:cd01372 308 NSHTLMIACVSPADSNFEETLNTLKYA 334
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
43-380 5.36e-94

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 285.79  E-value: 5.36e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   43 GNIRVFCRVRPL----LTGNQSDIlhIQLPPHDnkaLTLAKMEESHTGRTTDTQKSYNFSFDRVF----GPRS---SQSE 111
Cdd:cd01365   1 ANVKVAVRVRPFnsreKERNSKCI--VQMSGKE---TTLKNPKQADKNNKATREVPKSFSFDYSYwshdSEDPnyaSQEQ 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  112 VFEEIS-LLVQSALDGYNVCCFAYGQTGSGKTFTMEGGEQEElwGVIPRAVQQIFKSAKALSEQGWQYTFTASFVEIYNE 190
Cdd:cd01365  76 VYEDLGeELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQP--GIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNE 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  191 TLRDLLYKGKPNKRPEHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVF-----QLD 265
Cdd:cd01365 154 KVRDLLNPKPKKNKGNLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFtivltQKR 233
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  266 IEGEnTARDSKCKSMLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALAN--------KDSFVPYRNSKLT 337
Cdd:cd01365 234 HDAE-TNLTTEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADmssgkskkKSSFIPYRDSVLT 312
                       330       340       350       360
                ....*....|....*....|....*....|....*....|...
gi 6503041  338 YLLQNCLGGNSKTLMFANISPEEESFSESLNSLRFASKVNDCV 380
Cdd:cd01365 313 WLLKENLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKIV 355
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
44-375 1.26e-88

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 270.87  E-value: 1.26e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPLLTGNQSDilhiqlpphdnKALTLAKMEES------HTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEEIS 117
Cdd:cd01371   2 NVKVVVRCRPLNGKEKAA-----------GALQIVDVDEKrgqvsvRNPKATANEPPKTFTFDAVFDPNSKQLDVYDETA 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  118 L-LVQSALDGYNVCCFAYGQTGSGKTFTMEGG-EQEELWGVIPRAVQQIFKS-AKALSEQgwQYTFTASFVEIYNETLRD 194
Cdd:cd01371  71 RpLVDSVLEGYNGTIFAYGQTGTGKTYTMEGKrEDPELRGIIPNSFAHIFGHiARSQNNQ--QFLVRVSYLEIYNEEIRD 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  195 LLYKgkpNKRPEHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIE------- 267
Cdd:cd01371 149 LLGK---DQTKRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIEcsekged 225
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  268 GENTARDSKcksmLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALA-NKDSFVPYRNSKLTYLLQNCLGG 346
Cdd:cd01371 226 GENHIRVGK----LNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVdGKSTHIPYRDSKLTRLLQDSLGG 301
                       330       340
                ....*....|....*....|....*....
gi 6503041  347 NSKTLMFANISPEEESFSESLNSLRFASK 375
Cdd:cd01371 302 NSKTVMCANIGPADYNYDETLSTLRYANR 330
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
44-375 3.03e-88

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 269.58  E-value: 3.03e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPLltgNQSDILHiqlpphDNKALTLAKMEESHTGRTTDTQKSynFSFDRVFGPRSSQSEVFEEISL-LVQS 122
Cdd:cd01369   3 NIKVVCRFRPL---NELEVLQ------GSKSIVKFDPEDTVVIATSETGKT--FSFDRVFDPNTTQEDVYNFAAKpIVDD 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  123 ALDGYNVCCFAYGQTGSGKTFTMEG-GEQEELWGVIPRAVQQIFKSAKALSEqGWQYTFTASFVEIYNETLRDLLYKGKP 201
Cdd:cd01369  72 VLNGYNGTIFAYGQTSSGKTYTMEGkLGDPESMGIIPRIVQDIFETIYSMDE-NLEFHVKVSYFEIYMEKIRDLLDVSKT 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  202 NKRpeheIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTARDSKCKSML 281
Cdd:cd01369 151 NLS----VHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENVETEKKKSGKL 226
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  282 CLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALA-NKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISPEE 360
Cdd:cd01369 227 YLVDLAGSEKVSKTGAEGAVLDEAKKINKSLSALGNVINALTdGKKTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSS 306
                       330
                ....*....|....*
gi 6503041  361 ESFSESLNSLRFASK 375
Cdd:cd01369 307 YNESETLSTLRFGQR 321
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
44-375 1.86e-84

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 261.11  E-value: 1.86e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPL----LTGNQSDIlhIQLPPhDNKALTLAkmeeshTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEE-ISL 118
Cdd:cd01364   3 NIQVVVRCRPFnlreRKASSHSV--VEVDP-VRKEVSVR------TGGLADKSSTKTYTFDMVFGPEAKQIDVYRSvVCP 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  119 LVQSALDGYNVCCFAYGQTGSGKTFTMEG---------GEQEELWGVIPRAVQQIFKSakaLSEQGWQYTFTASFVEIYN 189
Cdd:cd01364  74 ILDEVLMGYNCTIFAYGQTGTGKTYTMEGdrspneeytWELDPLAGIIPRTLHQLFEK---LEDNGTEYSVKVSYLEIYN 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  190 ETLRDLLykgKPNKRPEHEIRKVSNNE----ITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQL- 264
Cdd:cd01364 151 EELFDLL---SPSSDVSERLRMFDDPRnkrgVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSIt 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  265 ------DIEGENTARDSKcksmLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKDSFVPYRNSKLTY 338
Cdd:cd01364 228 ihiketTIDGEELVKIGK----LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTR 303
                       330       340       350
                ....*....|....*....|....*....|....*..
gi 6503041  339 LLQNCLGGNSKTLMFANISPEEESFSESLNSLRFASK 375
Cdd:cd01364 304 LLQDSLGGRTKTSIIATISPASVNLEETLSTLEYAHR 340
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
91-375 1.87e-83

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 257.26  E-value: 1.87e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   91 TQKSYNFSFDRVFGPRSSQSEVFEEISL-LVQSALDGYNVCCFAYGQTGSGKTFTMEGGEQEElwGVIPRAVQQIFKSAK 169
Cdd:cd01374  35 EPPSTSFTFDHVFGGDSTNREVYELIAKpVVKSALEGYNGTIFAYGQTSSGKTFTMSGDEDEP--GIIPLAIRDIFSKIQ 112
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  170 ALSEQgwQYTFTASFVEIYNETLRDLLYKGKPNKRpeheIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTART 249
Cdd:cd01374 113 DTPDR--EFLLRVSYLEIYNEKINDLLSPTSQNLK----IRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGET 186
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  250 CMNDHSSRSHSVFQLDIEG---ENTARDSKCKSMLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKD 326
Cdd:cd01374 187 DMNERSSRSHTIFRITIESserGELEEGTVRVSTLNLIDLAGSERAAQTGAAGVRRKEGSHINKSLLTLGTVISKLSEGK 266
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|.
gi 6503041  327 S--FVPYRNSKLTYLLQNCLGGNSKTLMFANISPEEESFSESLNSLRFASK 375
Cdd:cd01374 267 VggHIPYRDSKLTRILQPSLGGNSRTAIICTITPAESHVEETLNTLKFASR 317
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
44-378 9.61e-82

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 253.81  E-value: 9.61e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPL----LTGNQSDILHIQlpphDNKALTLAKMEESHTGRTTDTQKSYN---------FSFDRVFGPRSSQS 110
Cdd:cd01370   1 SLTVAVRVRPFsekeKNEGFRRIVKVM----DNHMLVFDPKDEEDGFFHGGSNNRDRrkrrnkelkYVFDRVFDETSTQE 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  111 EVFEEISL-LVQSALDGYNVCCFAYGQTGSGKTFTMEGGEQEElwGVIPRAVQQIFKSAKALSEQGwQYTFTASFVEIYN 189
Cdd:cd01370  77 EVYEETTKpLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEP--GLMVLTMKELFKRIESLKDEK-EFEVSMSYLEIYN 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  190 ETLRDLLykgKPNKRPeHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGE 269
Cdd:cd01370 154 ETIRDLL---NPSSGP-LELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQ 229
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  270 NTARDSKCKSM---LCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKDS---FVPYRNSKLTYLLQNC 343
Cdd:cd01370 230 DKTASINQQVRqgkLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADPGKknkHIPYRDSKLTRLLKDS 309
                       330       340       350
                ....*....|....*....|....*....|....*
gi 6503041  344 LGGNSKTLMFANISPEEESFSESLNSLRFASKVND 378
Cdd:cd01370 310 LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKN 344
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
45-376 1.47e-74

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 234.78  E-value: 1.47e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   45 IRVFCRVRPLLTGNQSdilHIQLPPhDNKALTLAKMEESHTGRTTDTQKSYNFSFDRVFgPRSSQSEVFEEISL-LVQSA 123
Cdd:cd01375   2 VQAFVRVRPTDDFAHE---MIKYGE-DGKSISIHLKKDLRRGVVNNQQEDWSFKFDGVL-HNASQELVYETVAKdVVSSA 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  124 LDGYNVCCFAYGQTGSGKTFTMEGG-EQEELWGVIPRAVQQIFKSAKALSEQgwQYTFTASFVEIYNETLRDLL----YK 198
Cdd:cd01375  77 LAGYNGTIFAYGQTGAGKTFTMTGGtENYKHRGIIPRALQQVFRMIEERPTK--AYTVHVSYLEIYNEQLYDLLstlpYV 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  199 GKpnKRPEHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIE------GENTA 272
Cdd:cd01375 155 GP--SVTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEahsrtlSSEKY 232
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  273 RDSKcksmLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKD-SFVPYRNSKLTYLLQNCLGGNSKTL 351
Cdd:cd01375 233 ITSK----LNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSDKDrTHVPFRQSKLTHVLRDSLGGNCNTV 308
                       330       340
                ....*....|....*....|....*
gi 6503041  352 MFANISPEEESFSESLNSLRFASKV 376
Cdd:cd01375 309 MVANIYGEAAQLEETLSTLRFASRV 333
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
44-375 1.16e-71

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 234.25  E-value: 1.16e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPL-LTGNQSDILHIQLPPHDNkALTLAKMEEShTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEE-ISLLVQ 121
Cdd:COG5059   6 NSPLKSRLSSRnEKSVSDIKSTIRIIPGEL-GERLINTSKK-SHVSLEKSKEGTYAFDKVFGPSATQEDVYEEtIKPLID 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  122 SALDGYNVCCFAYGQTGSGKTFTMEGGEQEElwGVIPRAVQQIFKSAKALSEqGWQYTFTASFVEIYNETLRDLLYKGKP 201
Cdd:COG5059  84 SLLLGYNCTVFAYGQTGSGKTYTMSGTEEEP--GIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEE 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  202 NKRpeheIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEGENTARDSKCKSML 281
Cdd:COG5059 161 SLN----IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKL 236
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  282 CLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKD--SFVPYRNSKLTYLLQNCLGGNSKTLMFANISPE 359
Cdd:COG5059 237 SLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKksGHIPYRESKLTRLLQDSLGGNCNTRVICTISPS 316
                       330
                ....*....|....*.
gi 6503041  360 EESFSESLNSLRFASK 375
Cdd:COG5059 317 SNSFEETINTLKFASR 332
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
44-377 1.94e-70

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 223.92  E-value: 1.94e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPLLTGNQSDILHIQLPPHDNKALTLAkmEESHTGRTtdtqKSYNFsfDRVFGPRSSQSEVFE-EISLLVQS 122
Cdd:cd01376   1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELA--DPRNHGET----LKYQF--DAFYGEESTQEDIYArEVQPIVPH 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  123 ALDGYNVCCFAYGQTGSGKTFTMEGgeQEELWGVIPRAVQQIFKSAKalsEQGWQYTFTASFVEIYNETLRDLLyKGKPN 202
Cdd:cd01376  73 LLEGQNATVFAYGSTGAGKTFTMLG--SPEQPGLMPLTVMDLLQMTR---KEAWALSFTMSYLEIYQEKILDLL-EPASK 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  203 KRPeheIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLD-IEGENTARDSKCKSML 281
Cdd:cd01376 147 ELV---IREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKvDQRERLAPFRQRTGKL 223
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  282 CLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALANKDSFVPYRNSKLTYLLQNCLGGNSKTLMFANISPEEE 361
Cdd:cd01376 224 NLIDLAGSEDNRRTGNEGIRLKESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPERT 303
                       330
                ....*....|....*.
gi 6503041  362 SFSESLNSLRFASKVN 377
Cdd:cd01376 304 FYQDTLSTLNFAARSR 319
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
45-373 5.14e-69

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 221.11  E-value: 5.14e-69
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   45 IRVFCRVRPLL--TGNQSDILHIQLPPHDNKALTLAKMEESHTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEEISL-LVQ 121
Cdd:cd01368   3 VKVYLRVRPLSkdELESEDEGCIEVINSTTVVLHPPKGSAANKSERNGGQKETKFSFSKVFGPNTTQKEFFQGTALpLVQ 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  122 SALDGYNVCCFAYGQTGSGKTFTMEGGEQEElwGVIPRAVQQIFKSAKalseqgwQYTFTASFVEIYNETLRDLLYK--- 198
Cdd:cd01368  83 DLLHGKNGLLFTYGVTNSGKTYTMQGSPGDG--GILPRSLDVIFNSIG-------GYSVFVSYIEIYNEYIYDLLEPsps 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  199 GKPNKRPEHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVF-------QLDIEGENT 271
Cdd:cd01368 154 SPTKKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFtiklvqaPGDSDGDVD 233
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  272 ARDSKCK-SMLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALAN-----KDSFVPYRNSKLTYLLQNCLG 345
Cdd:cd01368 234 QDKDQITvSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLREnqlqgTNKMVPFRDSKLTHLFQNYFD 313
                       330       340
                ....*....|....*....|....*...
gi 6503041  346 GNSKTLMFANISPEEESFSESLNSLRFA 373
Cdd:cd01368 314 GEGKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
44-376 6.81e-68

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 218.15  E-value: 6.81e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPLLTGNQsdilhiqlpphdNKALTLAKMEESHTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEEISL-LVQS 122
Cdd:cd01373   2 AVKVFVRIRPPAEREG------------DGEYGQCLKKLSSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVGKpIVES 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  123 ALDGYNVCCFAYGQTGSGKTFTMEG------GEQEELWGVIPRAVQQIF---KSAKALSEQGWQYTFTASFVEIYNETLR 193
Cdd:cd01373  70 CLSGYNGTIFAYGQTGSGKTYTMWGpsesdnESPHGLRGVIPRIFEYLFsliQREKEKAGEGKSFLCKCSFLEIYNEQIY 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  194 DLLykgKPNKRPEHeIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEgentar 273
Cdd:cd01373 150 DLL---DPASRNLK-LREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIE------ 219
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  274 dSKCK---------SMLCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALAN----KDSFVPYRNSKLTYLL 340
Cdd:cd01373 220 -SWEKkacfvnirtSRLNLVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDvahgKQRHVCYRDSKLTFLL 298
                       330       340       350
                ....*....|....*....|....*....|....*.
gi 6503041  341 QNCLGGNSKTLMFANISPEEESFSESLNSLRFASKV 376
Cdd:cd01373 299 RDSLGGNAKTAIIANVHPSSKCFGETLSTLRFAQRA 334
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
44-376 3.24e-66

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 213.31  E-value: 3.24e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   44 NIRVFCRVRPL----LTGNQSDIlhIQLPPHDnkalTLAKMEESHTGRTTDTQKSYNFSFDRVFGPRSSQSEVFEEISL- 118
Cdd:cd01367   1 KIKVCVRKRPLnkkeVAKKEIDV--VSVPSKL----TLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKp 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  119 LVQSALDGYNVCCFAYGQTGSGKTFTMEGGE--QEELWGVIPRAVQQIFkSAKALSEQGWQYTFTASFVEIYNETLRDLL 196
Cdd:cd01367  75 LVPHIFEGGKATCFAYGQTGSGKTYTMGGDFsgQEESKGIYALAARDVF-RLLNKLPYKDNLGVTVSFFEIYGGKVFDLL 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  197 ykgkpNKRPEHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEgenTARDSK 276
Cdd:cd01367 154 -----NRKKRVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILR---DRGTNK 225
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  277 CKSMLCLVDLAGSER-VQKSQSQGERFKEMTAINSSLTNLGIVIAALANKDSFVPYRNSKLTYLLQNCL-GGNSKTLMFA 354
Cdd:cd01367 226 LHGKLSFVDLAGSERgADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFiGENSKTCMIA 305
                       330       340
                ....*....|....*....|..
gi 6503041  355 NISPEEESFSESLNSLRFASKV 376
Cdd:cd01367 306 TISPGASSCEHTLNTLRYADRV 327
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
28-196 3.14e-59

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 188.97  E-value: 3.14e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     28 EMERRKLHNTIQELKGNIRVFCRVRPLLTgnqsDILHIQLPPHDNKAltlakmeeshtgrTTDTQKSYNFSFDRVFGPRS 107
Cdd:pfam16796   5 ETLRRKLENSIQELKGNIRVFARVRPELL----SEAQIDYPDETSSD-------------GKIGSKNKSFSFDRVFPPES 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    108 SQSEVFEEISLLVQSALDGYNVCCFAYGQTGSGKTFTMeggeqeelwgvIPRAVQQIFKSAKALsEQGWQYTFTASFVEI 187
Cdd:pfam16796  68 EQEDVFQEISQLVQSCLDGYNVCIFAYGQTGSGSNDGM-----------IPRAREQIFRFISSL-KKGWKYTIELQFVEI 135

                  ....*....
gi 6503041    188 YNETLRDLL 196
Cdd:pfam16796 136 YNESSQDLL 144
PLN03188 PLN03188
kinesin-12 family protein; Provisional
45-375 1.44e-51

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 185.52  E-value: 1.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041     45 IRVFCRVRPLLTGNQSDILHIQLpphDNKALTLakmeeshTGRTtdtqksynFSFDRVFGPRSSQSEVFEEI-SLLVQSA 123
Cdd:PLN03188  100 VKVIVRMKPLNKGEEGEMIVQKM---SNDSLTI-------NGQT--------FTFDSIADPESTQEDIFQLVgAPLVENC 161
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    124 LDGYNVCCFAYGQTGSGKTFTMEG-----------GEQEelwGVIPRAVQQIFKSAK----ALSEQGWQYTFTASFVEIY 188
Cdd:PLN03188  162 LAGFNSSVFAYGQTGSGKTYTMWGpanglleehlsGDQQ---GLTPRVFERLFARINeeqiKHADRQLKYQCRCSFLEIY 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    189 NETLRDLLYKGKPNKrpehEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQNRSTARTCMNDHSSRSHSVFQLDIEg 268
Cdd:PLN03188  239 NEQITDLLDPSQKNL----QIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVE- 313
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041    269 entardSKCKSM-----------LCLVDLAGSERVQKSQSQGERFKEMTAINSSLTNLGIVIAALAN-----KDSFVPYR 332
Cdd:PLN03188  314 ------SRCKSVadglssfktsrINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEisqtgKQRHIPYR 387
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 6503041    333 NSKLTYLLQNCLGGNSKTLMFANISPEEESFSESLNSLRFASK 375
Cdd:PLN03188  388 DSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQR 430
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
99-329 9.70e-31

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 115.52  E-value: 9.70e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   99 FDRVFGPRSSQSEVFEEISLLVQSALDGYNV-CCFAYGQTGSGKTFTMEggeqeelwGVIPRAVQQIFKSAKALSEQGWQ 177
Cdd:cd01363  22 FYRGFRRSESQPHVFAIADPAYQSMLDGYNNqSIFAYGESGAGKTETMK--------GVIPYLASVAFNGINKGETEGWV 93
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  178 YtftasfveiynetlrdllykgkpnkrpeheirkvsnneitvtnLTYQKVNNEDEVHNLIMLANQNRsTARTCMNDHSSR 257
Cdd:cd01363  94 Y-------------------------------------------LTEITVTLEDQILQANPILEAFG-NAKTTRNENSSR 129
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6503041  258 SHSVFQLdiegentardskcksmlcLVDLAGSERvqksqsqgerfkemtaINSSLTNLGIVIaaLANKDSFV 329
Cdd:cd01363 130 FGKFIEI------------------LLDIAGFEI----------------INESLNTLMNVL--RATRPHFV 165
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
31-322 8.71e-19

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 87.87  E-value: 8.71e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041   31 RRKLHNTIQELKgNIRVFCRVRPlltgnqsdilhiqlpPHDNKALTLAKMEESHTGRTTDTQKSYN-----------FSF 99
Cdd:COG5059 294 TRLLQDSLGGNC-NTRVICTISP---------------SSNSFEETINTLKFASRAKSIKNKIQVNsssdssreieeIKF 357
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  100 DRVFGPRSSQSEVFEEISLLVQSALDGYnvccFAYGQTGSGKTFTMEggEQEELwgVIPRAVQQIFKSAKALSEQGWQYT 179
Cdd:COG5059 358 DLSEDRSEIEILVFREQSQLSQSSLSGI----FAYMQSLKKETETLK--SRIDL--IMKSIISGTFERKKLLKEEGWKYK 429
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6503041  180 FTASFVEIYnETLRDLLYkgkpnkrpEHEIRKVSNNEITVTNLTYQKVNNEDEVHNLIMLANQ------NRSTARTCMND 253
Cdd:COG5059 430 STLQFLRIE-IDRLLLLR--------EEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVEsekaskLRSSASTKLNL 500
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6503041  254 HSSRSHSVFQLDIEGENtarDSKCKSMLCLVDLAGSERvQKSQSQGERFKEMTAINSSLTNLGIVIAAL 322
Cdd:COG5059 501 RSSRSHSKFRDHLNGSN---SSTKELSLNQVDLAGSER-KVSQSVGELLRETQSLNKSLSSLGDVIHAL 565
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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