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Conserved domains on  [gi|6006866|gb|AAF00642|]
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hypothetical protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SET super family cl40432
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, ...
 141-323 1.18e-56

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, Enhancer-of-zeste, Trithorax (SET) domain superfamily corresponds to SET domain-containing lysine methyltransferases, which catalyze site and state-specific methylation of lysine residues in histones that are fundamental in epigenetic regulation of gene activation and silencing in eukaryotic organisms. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains has been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as N-SET and C-SET. C-SET forms an unusual and conserved knot-like structure of probable functional importance. In addition to N-SET and C-SET, an insert region (I-SET) and flanking regions of high structural variability form part of the overall structure. Some family members contain a pre-SET domain, which is found in a number of histone methyltransferases (HMTase), and a post-SET domain, which harbors a zinc-binding site.


The actual alignment was detected with superfamily member cd10538:

Pssm-ID: 394802 [Multi-domain]  Cd Length: 217  Bit Score: 183.73  E-value: 1.18e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  141 DESGCEC-ERCEEGYCKCLAFAGME---------------EIANECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWC 204
Cdd:cd10538  23 DSVGCKCkDDCLDSKCACAAESDGIfaytkngllrlnnspPPIFECNSKCSCDDDCKNRVVQRGLQARLQVFRTSKKGWG 102

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  205 LYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRStqsfaSALLVVREHLPSGQACLRINIDATRIGNVARFINHSC 284
Cdd:cd10538 103 VRSLEFIPKGSFVCEYVGEVITTSEADRRGKIYDKSGG-----SYLFDLDEFSDSDGDGEELCVDATFCGNVSRFINHSC 177

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 6006866  285 DgGNLSTVLLRSSGALL--PRLCFFAAKDIIAEEELSFSYG 323
Cdd:cd10538 178 D-PNLFPFNVVIDHDDLryPRIALFATRDILPGEELTFDYG 217
Pre-SET pfam05033
Pre-SET motif; This protein motif is a zinc binding motif. It contains 9 conserved cysteines ...
 70-183 8.41e-06

Pre-SET motif; This protein motif is a zinc binding motif. It contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilising SET domains.


:

Pssm-ID: 461530 [Multi-domain]  Cd Length: 99  Bit Score: 43.95  E-value: 8.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866     70 ARSLENISIPFHNSIDSQR-YAYFIYTPfqipasspppprqwwgaaanecgsesRPCFDSvsesgrfGVSLVDESGCECE 148
Cdd:pfam05033   2 SKGKENVPIPVVNEVDDEPpPPDFTYIT--------------------------SYIYPK-------EFLLIIPQGCDCG 48

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 6006866    149 RCEEGYCKCLAFAGMEEIAN----------------ECGSGCGCGSDCSNR 183
Cdd:pfam05033  49 DCSSEKCSCAQLNGGEFRFPydkdgllvpeskppiyECNPLCGCPPSCPNR 99
 
Name Accession Description Interval E-value
SET_SETDB-like cd10538
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) ...
 141-323 1.18e-56

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2, and similar proteins; The family includes SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2. SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis. SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. This family also includes the pre-SET domain, which is found in a number of histone methyltransferases (HMTase), N-terminal to the SET domain. Pre-SET domain is a zinc binding motif which contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilizing SET domains. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380936 [Multi-domain]  Cd Length: 217  Bit Score: 183.73  E-value: 1.18e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  141 DESGCEC-ERCEEGYCKCLAFAGME---------------EIANECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWC 204
Cdd:cd10538  23 DSVGCKCkDDCLDSKCACAAESDGIfaytkngllrlnnspPPIFECNSKCSCDDDCKNRVVQRGLQARLQVFRTSKKGWG 102

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  205 LYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRStqsfaSALLVVREHLPSGQACLRINIDATRIGNVARFINHSC 284
Cdd:cd10538 103 VRSLEFIPKGSFVCEYVGEVITTSEADRRGKIYDKSGG-----SYLFDLDEFSDSDGDGEELCVDATFCGNVSRFINHSC 177

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 6006866  285 DgGNLSTVLLRSSGALL--PRLCFFAAKDIIAEEELSFSYG 323
Cdd:cd10538 178 D-PNLFPFNVVIDHDDLryPRIALFATRDILPGEELTFDYG 217
SET smart00317
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on ...
 191-326 6.47e-28

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on outlier plant homologues


Pssm-ID: 214614 [Multi-domain]  Cd Length: 124  Bit Score: 105.88  E-value: 6.47e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866     191 VSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASallvvrehlpsgQACLRINIDA 270
Cdd:smart00317   1 NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLF------------DIDSDLCIDA 68

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 6006866     271 TRIGNVARFINHSCDgGNLSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYGDVS 326
Cdd:smart00317  69 RRKGNLARFINHSCE-PNCELLFVEVNGD--DRIVIFALRDIKPGEELTIDYGSDY 121
SET pfam00856
SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be ...
 202-323 1.39e-23

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.


Pssm-ID: 459965 [Multi-domain]  Cd Length: 115  Bit Score: 93.74  E-value: 1.39e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866    202 GWCLYADQLIKQGQFICEYAGE-LLTTDEARRRQNIYDKLRSTQSFASALLVVREhlpsgQACLRINIDATRIGNVARFI 280
Cdd:pfam00856   1 GRGLFATEDIPKGEFIGEYVEVlLITKEEADKRELLYYDKLELRLWGPYLFTLDE-----DSEYCIDARALYYGNWARFI 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 6006866    281 NHSCDgGNLSTVLLRSSGalLPRLCFFAAKDIIAEEELSFSYG 323
Cdd:pfam00856  76 NHSCD-PNCEVRVVYVNG--GPRIVIFALRDIKPGEELTIDYG 115
SET COG2940
SET domain-containing protein (function unknown) [General function prediction only];
190-348 4.61e-18

SET domain-containing protein (function unknown) [General function prediction only];


Pssm-ID: 442183 [Multi-domain]  Cd Length: 134  Bit Score: 79.62  E-value: 4.61e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  190 SVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRsTQSFasallvvreHLPSGQAclrinID 269
Cdd:COG2940   5 HPRIEVRPSPIHGRGVFATRDIPKGTLIGEYPGEVITWAEAERREPHKEPLH-TYLF---------ELDDDGV-----ID 69

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6006866  270 ATRIGNVARFINHSCDgGNLSTVLLRssgallPRLCFFAAKDIIAEEELSFSYGdvsvaGENRDDKLNCSCGSscCLGT 348
Cdd:COG2940  70 GALGGNPARFINHSCD-PNCEADEED------GRIFIVALRDIAAGEELTYDYG-----LDYDEEEYPCRCPN--CRGT 134
Pre-SET pfam05033
Pre-SET motif; This protein motif is a zinc binding motif. It contains 9 conserved cysteines ...
 70-183 8.41e-06

Pre-SET motif; This protein motif is a zinc binding motif. It contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilising SET domains.


Pssm-ID: 461530 [Multi-domain]  Cd Length: 99  Bit Score: 43.95  E-value: 8.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866     70 ARSLENISIPFHNSIDSQR-YAYFIYTPfqipasspppprqwwgaaanecgsesRPCFDSvsesgrfGVSLVDESGCECE 148
Cdd:pfam05033   2 SKGKENVPIPVVNEVDDEPpPPDFTYIT--------------------------SYIYPK-------EFLLIIPQGCDCG 48

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 6006866    149 RCEEGYCKCLAFAGMEEIAN----------------ECGSGCGCGSDCSNR 183
Cdd:pfam05033  49 DCSSEKCSCAQLNGGEFRFPydkdgllvpeskppiyECNPLCGCPPSCPNR 99
 
Name Accession Description Interval E-value
SET_SETDB-like cd10538
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) ...
 141-323 1.18e-56

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2, and similar proteins; The family includes SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2. SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis. SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. This family also includes the pre-SET domain, which is found in a number of histone methyltransferases (HMTase), N-terminal to the SET domain. Pre-SET domain is a zinc binding motif which contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilizing SET domains. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380936 [Multi-domain]  Cd Length: 217  Bit Score: 183.73  E-value: 1.18e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  141 DESGCEC-ERCEEGYCKCLAFAGME---------------EIANECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWC 204
Cdd:cd10538  23 DSVGCKCkDDCLDSKCACAAESDGIfaytkngllrlnnspPPIFECNSKCSCDDDCKNRVVQRGLQARLQVFRTSKKGWG 102

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  205 LYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRStqsfaSALLVVREHLPSGQACLRINIDATRIGNVARFINHSC 284
Cdd:cd10538 103 VRSLEFIPKGSFVCEYVGEVITTSEADRRGKIYDKSGG-----SYLFDLDEFSDSDGDGEELCVDATFCGNVSRFINHSC 177

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 6006866  285 DgGNLSTVLLRSSGALL--PRLCFFAAKDIIAEEELSFSYG 323
Cdd:cd10538 178 D-PNLFPFNVVIDHDDLryPRIALFATRDILPGEELTFDYG 217
SET_SETMAR cd10544
SET domain (including pre-SET and post-SET domains) found in SET domain and mariner ...
 143-354 4.25e-55

SET domain (including pre-SET and post-SET domains) found in SET domain and mariner transposase fusion protein (SETMAR) and similar proteins; SETMAR (also termed metnase) is a DNA-binding protein that is indirectly recruited to sites of DNA damage through protein-protein interactions. It has a sequence-specific DNA-binding activity recognizing the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element and displays a DNA nicking and end joining activity. SETMAR also acts as a histone-lysine N-methyltransferase that methylates 'Lys-4' and 'Lys-36' of histone H3. It specifically mediates dimethylation of H3 'Lys-36' at sites of DNA double-strand break and may recruit proteins required for efficient DSB repair through non-homologous end-joining.


Pssm-ID: 380942 [Multi-domain]  Cd Length: 254  Bit Score: 180.96  E-value: 4.25e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  143 SGCECE--RCEEGYCKCLAFAGME---------EIAN------ECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWCL 205
Cdd:cd10544  25 PGCDCKtsSCEPETCSCLRKYGPNydddgclldFDGKysgpvfECNSMCKCSESCQNRVVQNGLQFKLQVFKTPKKGWGL 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  206 YADQLIKQGQFICEYAGELLTTDEARRRQniydkLRSTQSFASALLVVREHLPSGQaCLRINIDATRIGNVARFINHSCD 285
Cdd:cd10544 105 RTLEFIPKGRFVCEYAGEVIGFEEARRRT-----KSQTKGDMNYIIVLREHLSSGK-VLETFVDPTYIGNIGRFLNHSCE 178

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6006866  286 gGNLSTVLLRSSGaLLPRLCFFAAKDIIAEEELSFSYG----------DVSVAGENRDDKLnCSCGSSCCLGTLPCENT 354
Cdd:cd10544 179 -PNLFMVPVRVDS-MVPKLALFAARDIVAGEELSFDYSgefsnsvesvTLARQDESKSRKP-CLCGAENCRGFLPFDES 254
SET_SUV39H cd10542
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 143-349 2.68e-43

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homologs, SUV39H1, SUV39H2 and similar proteins; This family includes SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. Also included are Schizosaccharomyces pombe H3K9 methyltransferase Clr4 (SUV39H homolog) and Neurospora crassa DIM-5, both of which also methylate 'Lys-9' of histone H3.


Pssm-ID: 380940 [Multi-domain]  Cd Length: 245  Bit Score: 150.14  E-value: 2.68e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  143 SGCEC-ERCEEGYCKCLAFAGMEEIAN---------------ECGSGCGCGSDCSNRVTQKGVSVSLKIVR-DEKKGWCL 205
Cdd:cd10542  23 VGCECtEDCHNNNPTCCPAESGVKFAYdkqgrlrlppgtpiyECNSRCKCGPDCPNRVVQRGRKVPLCIFRtSNGRGWGV 102

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  206 YADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFAsallvvrehLP--SGQACLriNIDATRIGNVARFINHS 283
Cdd:cd10542 103 KTLEDIKKGTFVMEYVGEIITSEEAERRGKIYDANGRTYLFD---------LDynDDDCEY--TVDAAYYGNISHFINHS 171

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6006866  284 CDgGNLST--VLLRSSGALLPRLCFFAAKDIIAEEELSFSY-----GDVSVAGENR--DDKLNCSCGSSCCLGTL 349
Cdd:cd10542 172 CD-PNLAVyaVWINHLDPRLPRIAFFAKRDIKAGEELTFDYlmtgtGGSSESTIPKpkDVRVPCLCGSKNCRKYL 245
SET_EHMT cd10543
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 169-345 1.38e-34

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase EHMT1, EHMT2 and similar proteins; This family includes EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380941 [Multi-domain]  Cd Length: 231  Bit Score: 126.68  E-value: 1.38e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  169 ECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNiydklrstqsfAS 248
Cdd:cd10543  69 ECNRACSCWRNCRNRVVQNGIRYRLQLFRTRGMGWGVRALQDIPKGTFVCEYIGELISDSEADSRED-----------DS 137

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  249 ALLVVREHLPSGqAClrinIDATRIGNVARFINHSCDgGNLSTVL-------LRssgalLPRLCFFAAKDIIAEEELSFS 321
Cdd:cd10543 138 YLFDLDNKDGET-YC----IDARRYGNISRFINHLCE-PNLIPVRvfvehqdLR-----FPRIAFFASRDIKAGEELGFD 206

                       170       180
                ....*....|....*....|....
gi 6006866  322 YGDVSVAGENRddKLNCSCGSSCC 345
Cdd:cd10543 207 YGEKFWRIKGK--YFTCRCGSPKC 228
SET_AtSUVH-like cd10545
SET domain found in Arabidopsis thaliana histone H3-K9 methyltransferases (SUVHs) and similar ...
 143-323 2.86e-34

SET domain found in Arabidopsis thaliana histone H3-K9 methyltransferases (SUVHs) and similar proteins; Arabidopsis thaliana SUVH protein (also termed suppressor of variegation 3-9 homolog protein) is a histone-lysine N-methyltransferase that methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Some family members contain a post-SET domain which binds a Zn2+ ion. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380943 [Multi-domain]  Cd Length: 232  Bit Score: 125.98  E-value: 2.86e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  143 SGCECE-RCEEGY--CKCLAFAGMEEIAN-------------ECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWCLY 206
Cdd:cd10545  22 TGCDCKnRCTDGAsdCACVKKNGGEIPYNfngrlirakpaiyECGPLCKCPPSCYNRVTQKGLRYRLEVFKTAERGWGVR 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  207 ADQLIKQGQFICEYAGELLTTDEARRR----------QNIYD-KLRSTQSFASALLVVR-----EHLPSGQAClrinIDA 270
Cdd:cd10545 102 SWDSIPAGSFICEYVGELLDTSEADTRsgnddylfdiDNRQTnRGWDGGQRLDVGMSDGerssaEDEESSEFT----IDA 177

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 6006866  271 TRIGNVARFINHSCDgGNL--STVLLRSSGALLPRLCFFAAKDIIAEEELSFSYG 323
Cdd:cd10545 178 GSFGNVARFINHSCS-PNLfvQCVLYDHNDLRLPRVMLFAADNIPPLQELTYDYG 231
SET_SUV39H2 cd10532
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 136-349 7.13e-33

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 2 (SUV39H2) and similar proteins; SUV39H2 (EC 2.1.1.43; also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B (KMT1B), or Su(var)3-9 homolog 2) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. It mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions.


Pssm-ID: 380930 [Multi-domain]  Cd Length: 243  Bit Score: 122.69  E-value: 7.13e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  136 GVSLVDES--GCECERCEEGYCkCLAFAGMEEIAN--------------ECGSGCGCGSDCSNRVTQKGVSVSLKIVR-D 198
Cdd:cd10532  14 GINLDNEAtvGCDCSDCFFGKC-CPAEAGVLFAYNehgqlkippgtpiyECNSRCKCGPDCPNRVVQKGTQYSLCIFRtS 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  199 EKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFasALLVVREHLpsgqaclriNIDATRIGNVAR 278
Cdd:cd10532  93 NGRGWGVKTLQKIKKNSFVMEYVGEVITSEEAERRGQFYDSKGITYLF--DLDYESDEF---------TVDAARYGNVSH 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  279 FINHSCDgGNLS--TVLLRSSGALLPRLCFFAAKDIIAEEELSFSY-----GDVS-----VAGENRDDKLNCSCGSSCCL 346
Cdd:cd10532 162 FVNHSCD-PNLQvfNVFIDNLDTRLPRIALFSTRTIKAGEELTFDYqmkgsGDLSsdsidNSPAKKRVRTVCKCGAVTCR 240


                ...
gi 6006866  347 GTL 349
Cdd:cd10532 241 GYL 243
SET_SUV39H_Clr4-like cd20073
SET domain (including pre-SET and post-SET domains) found in of Schizosaccharomyces pombe H3K9 ...
 143-349 1.88e-30

SET domain (including pre-SET and post-SET domains) found in of Schizosaccharomyces pombe H3K9 methyltransferase Clr4, and similar proteins; This subfamily contains fission yeast Schizosaccharomyces pombe H3K9 methyltransferase Clr4 (also known as Suv39h), the sole homolog of the mammalian SUV39H1 and SUV39H2 enzymes, that has a critical role in preventing aberrant heterochromatin formation. It is known to di- and tri-methylate Lys-9 of histone H3, a central heterochromatic histone modification, with its specificity profile most similar to that of the human SUV39H2 homolog.


Pssm-ID: 380999 [Multi-domain]  Cd Length: 259  Bit Score: 116.52  E-value: 1.88e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  143 SGCECER---CE---EGYCKCL------AFAGMEE---------IANECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKK 201
Cdd:cd20073  24 SGCSCSKlggCDlnnPGSCQCLedsnekSFAYDEYgrvrantgsIIYECNENCDCGINCPNRVVQRGRKLPLEIFKTKHK 103

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  202 GWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASALLvvrehlpSGQACLRINIDATRIGNVARFIN 281
Cdd:cd20073 104 GWGLRCPRFIKAGTFIGVYLGEVITQSEAEIRGKKYDNVGVTYLFDLDLF-------EDQVDEYYTVDAQYCGDVTRFIN 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  282 HSCDgGNLS--TVLLRSSGALLPRLCFFAAKDIIAEEELSFSY------------GDVSVAG-ENRDDKLNCSCGSSCCL 346
Cdd:cd20073 177 HSCD-PNLAiySVLRDKSDSKIYDLAFFAIKDIPALEELTFDYsgrnnfdqlgfiGNRSNSKyINLKNKRPCYCGSANCR 255


                ...
gi 6006866  347 GTL 349
Cdd:cd20073 256 GWL 258
SET_SUV39H_DIM5-like cd19473
SET domain (including pre-SET domain) found in Neurospora crassa (DIM-5) and similar proteins; ...
 136-349 7.85e-30

SET domain (including pre-SET domain) found in Neurospora crassa (DIM-5) and similar proteins; This subfamily contains Neurospora crassa DIM-5 (also termed H3-K9-HMTase dim-5, or HKMT) which functions as histone-lysine N-methyltransferase that specifically trimethylates histone H3 to form H3K9me3.


Pssm-ID: 380996 [Multi-domain]  Cd Length: 274  Bit Score: 115.11  E-value: 7.85e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  136 GVSLVDE---SGCEC---ERCEEGYCKCL----------------------AFAGM--EEIAN------ECGSGCGCGSD 179
Cdd:cd19473  14 GVELADEefrSGCECtddEDCMYSGCLCLqdvdpdddrdpgkkknayhssgAKKGClrGHMLNsrlpiyECHEGCACSDD 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  180 CSNRVTQKGVSVSLKIVR-DEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQN---------IY----DKLRSTQS 245
Cdd:cd19473  94 CPNRVVERGRKVPLQIFRtSDGRGWGVRSTVDIKRGQFVDCYVGEIITPEEAQRRRDaatiaqrkdVYlfalDKFSDPDS 173

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  246 FASALLvvrehlpsgQACLRIniDATRIGNVARFINHSCDGgNLS--TVLLRSSGALLPRLCFFAAKDIIAEEELSFSY- 322
Cdd:cd19473 174 LDPRLR---------GDPYEI--DGEFMSGPTRFINHSCDP-NLRifARVGDHADKHIHDLAFFAIKDIPRGTELTFDYv 241

                       250       260       270
                ....*....|....*....|....*....|...
gi 6006866  323 ----GDVSVAGENRDDKL--NCSCGSSCCLGTL 349
Cdd:cd19473 242 dgvtGLDDDAGDEEKEKEmtKCLCGSPKCRGYL 274
SET_SETDB1 cd10517
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) ...
 74-349 9.04e-30

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) and similar proteins; SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes.


Pssm-ID: 380915 [Multi-domain]  Cd Length: 288  Bit Score: 115.46  E-value: 9.04e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866   74 ENISIPFHNSIDSQRYAYFIYTPFQIPASspppprqwwGAAANeCGSE---SRPCFDSVSesgrfgvslvDESGCECERC 150
Cdd:cd10517  14 EGVPIPCVNEIDNSSPPYVEYSKERIPGK---------GVNIN-LDPDflvGCDCTDGCR----------DKSKCACQQL 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  151 EEGYCKCLAFAGMEEIAN---------------ECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQ 215
Cdd:cd10517  74 TIEATAATPGGQINPSAGyqyrrlmeklptgvyECNSRCKCDKRCYNRVVQNGLQVRLQVFKTEKKGWGIRCLDDIPKGS 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  216 FICEYAGELLTTDEARRRQNIYDKlrstQSFASA-LLVVREHLPSG------QACLriNIDATRIGNVARFINHSCDgGN 288
Cdd:cd10517 154 FVCIYAGQILTEDEANEEGLQYGD----EYFAELdYIEVVEKLKEGyesdveEHCY--IIDAKSEGNLGRYLNHSCS-PN 226

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6006866  289 LST--VLLRSSGALLPRLCFFAAKDIIAEEELSFSYG-DV-SVAGenrdDKLNCSCGSSCCLGTL 349
Cdd:cd10517 227 LFVqnVFVDTHDLRFPWVAFFASRYIRAGTELTWDYNyEVgSVPG----KVLYCYCGSSNCRGRL 287
SET_SUV39H1 cd10525
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 144-345 1.29e-28

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 1 (SUV39H1) and similar proteins; SUV39H1 (EC 2.1.1.43; also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A (KMT1A), position-effect variegation 3-9 homolog (SUV39H), or Su(var)3-9 homolog 1) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. It mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions.


Pssm-ID: 380923 [Multi-domain]  Cd Length: 255  Bit Score: 111.52  E-value: 1.29e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  144 GCECERC----EEGYCKCLA---FAGMEE---------IANECGSGCGCGSDCSNRVTQKGVSVSLKIVR-DEKKGWCLY 206
Cdd:cd10525  23 GCECQDClsqpVGGCCPGASkhrFAYNEQgqvkvrpglPIYECNSRCRCGPDCPNRVVQKGIQYDLCIFRtDNGRGWGVR 102

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  207 ADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFasALLVVREhlpsgqaclRINIDATRIGNVARFINHSCDG 286
Cdd:cd10525 103 TLEKIRKNSFVMEYVGEIITSEEAERRGQIYDRQGATYLF--DLDYVED---------VYTVDAAYYGNISHFVNHSCDP 171

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6006866  287 G-NLSTVLLRSSGALLPRLCFFAAKDIIAEEELSFSYG---------------DVSVAG----ENRDDKLNCSCGSSCC 345
Cdd:cd10525 172 NlQVYNVFIDNLDERLPRIALFATRTIRAGEELTFDYNmqvdpvdaestkmdsNFGLAGlpgsPKKRVRIECKCGVRSC 250
SET_SETD2 cd19172
SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and ...
 193-349 4.05e-28

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins; SETD2 (also termed HIF-1, huntingtin yeast partner B, huntingtin-interacting protein 1 (HIP-1), huntingtin-interacting protein B, lysine N-methyltransferase 3A or protein-lysine N-methyltransferase SETD2) acts as histone-lysine N-methyltransferase that specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. It has been shown that methylation is a posttranslational modification of dynamic microtubules and that SETD2 methylates alpha-tubulin at lysine 40, the same lysine that is marked by acetylation on microtubules. Methylation of microtubules occurs during mitosis and cytokinesis and can be ablated by SETD2 deletion, which causes mitotic spindle and cytokinesis defects, micronuclei, and polyploidy.


Pssm-ID: 380949 [Multi-domain]  Cd Length: 142  Bit Score: 106.90  E-value: 4.05e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASALlvvrehlpSGQAClrinIDATR 272
Cdd:cd19172   4 VEVFRTEKKGWGLRAAEDLPKGTFVIEYVGEVLDEKEFKRRMKEYAREGNRHYYFMAL--------KSDEI----IDATK 71

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6006866  273 IGNVARFINHSCDgGNLSTVLLRSSGALlpRLCFFAAKDIIAEEELSFSYgDVSVAGenrDDKLNCSCGSSCCLGTL 349
Cdd:cd19172  72 KGNLSRFINHSCE-PNCETQKWTVNGEL--RVGFFAKRDIPAGEELTFDY-QFERYG---KEAQKCYCGSPNCRGYI 141
SET_SETD2-like cd10531
SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), ...
 193-345 4.78e-28

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins; This family includes SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2) and ASH1-like protein (ASH1L), which function as histone-lysine N-methyltransferases. SETD2 specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. NSD2 shows histone H3 'Lys-27' (H3K27me) methyltransferase activity. ASH1L specifically methylates 'Lys-36' of histone H3 (H3K36me). The family also includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins.


Pssm-ID: 380929  Cd Length: 136  Bit Score: 106.57  E-value: 4.78e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFasallvvrehlpsgqaCLRIN----I 268
Cdd:cd10531   2 LELFRTEKKGWGVKAKEDIQKGEFIIEYVGEVIDKKEFKERLDEYEELGKSNFY----------------ILSLSddvvI 65

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6006866  269 DATRIGNVARFINHSCDgGNLSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYGDVSVAGENRDdklnCSCGSSCC 345
Cdd:cd10531  66 DATRKGNLSRFINHSCE-PNCETQKWIVNGE--YRIGIFALRDIPAGEELTFDYNFVNYNEAKQV----CLCGAQNC 135
SET smart00317
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on ...
 191-326 6.47e-28

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on outlier plant homologues


Pssm-ID: 214614 [Multi-domain]  Cd Length: 124  Bit Score: 105.88  E-value: 6.47e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866     191 VSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASallvvrehlpsgQACLRINIDA 270
Cdd:smart00317   1 NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLF------------DIDSDLCIDA 68

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 6006866     271 TRIGNVARFINHSCDgGNLSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYGDVS 326
Cdd:smart00317  69 RRKGNLARFINHSCE-PNCELLFVEVNGD--DRIVIFALRDIKPGEELTIDYGSDY 121
SET_EHMT2 cd10533
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 169-345 9.00e-28

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase 2 (EHMT2) and similar proteins; EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C (KMT1C), or protein G9a) acts as a histone-lysine N-methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380931 [Multi-domain]  Cd Length: 239  Bit Score: 108.95  E-value: 9.00e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  169 ECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNiydklrstqsfaS 248
Cdd:cd10533  69 ECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRED------------D 136

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  249 ALLVVREHLPSGQAClrinIDATRIGNVARFINHSCDGGNLST-VLLRSSGALLPRLCFFAAKDIIAEEELSFSYGDvsV 327
Cdd:cd10533 137 SYLFDLDNKDGEVYC----IDARYYGNISRFINHLCDPNIIPVrVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGD--R 210

                       170
                ....*....|....*...
gi 6006866  328 AGENRDDKLNCSCGSSCC 345
Cdd:cd10533 211 FWDIKSKYFTCQCGSEKC 228
SET_EHMT1 cd10535
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 169-345 2.27e-26

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase 1 (EHMT1) and similar proteins; EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, or lysine N-methyltransferase 1D (KMT1D)) acts as a histone-lysine N-methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380933 [Multi-domain]  Cd Length: 231  Bit Score: 105.01  E-value: 2.27e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  169 ECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNiydklrstqsfaS 248
Cdd:cd10535  69 ECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE------------D 136

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  249 ALLVVREHLPSGQAClrinIDATRIGNVARFINHSCDGGNLSTVLLRSSGAL-LPRLCFFAAKDIIAEEELSFSYGDvsV 327
Cdd:cd10535 137 SYLFDLDNKDGEVYC----IDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLrFPRIAFFSTRLIEAGEQLGFDYGE--R 210

                       170
                ....*....|....*...
gi 6006866  328 AGENRDDKLNCSCGSSCC 345
Cdd:cd10535 211 FWDIKGKLFSCRCGSPKC 228
SET_SETD8 cd10528
SET domain found in SET domain-containing protein 8 (SETD8) and similar proteins; SETD8 (EC 2. ...
 186-324 3.80e-25

SET domain found in SET domain-containing protein 8 (SETD8) and similar proteins; SETD8 (EC 2.1.1.43; also termed N-lysine methyltransferase KMT5A, H4-K20-HMTase KMT5A, lysine N-methyltransferase 5A, lysine-specific methylase 5A, PR/SET domain-containing protein 07, PR-Set7 or PR/SET07) is a nucleosomal histone-lysine N-methyltransferase that specifically monomethylates 'Lys-20' of histone H4 (H4K20me1). It plays a central role in the silencing of euchromatic genes.


Pssm-ID: 380926 [Multi-domain]  Cd Length: 141  Bit Score: 98.80  E-value: 3.80e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  186 QKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFasalLVVREHlPSGQAClr 265
Cdd:cd10528  12 LSGKEEGLKVIEIDGKGRGVIATRPFEKGDFVVEYHGDLITITEAKKREALYAKDPSTGCY----MYYFQY-KGKTYC-- 84

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  266 inIDATRI-GNVARFINHSCDGGNLSTVLLRSSGalLPRLCFFAAKDIIAEEELSFSYGD 324
Cdd:cd10528  85 --VDATKEsGRLGRLINHSKKKPNLKTKLLVIDG--VPHLILVAKRDIKPGEELLYDYGD 140
SET_EZH cd10519
SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar ...
 202-324 5.58e-25

SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar proteins; The family includes EZH1 and EZH2. EZH1 (EC 2.1.1.43; also termed ENX-2, or histone-lysine N-methyltransferase EZH1) is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. EZH2 (EC 2.1.1.43; also termed lysine N-methyltransferase 6, ENX-1, or histone-lysine N-methyltransferase EZH2) is a catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Both, EZH1 and EZH2, can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively.


Pssm-ID: 380917  Cd Length: 117  Bit Score: 97.70  E-value: 5.58e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  202 GWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASallvvrehlpSGQAClrinIDATRIGNVARFIN 281
Cdd:cd10519  12 GWGLFLKEPIKKDEFIGEYTGELISQDEADRRGKIYDKYNSSYLFNL----------NDQFV----VDATRKGNKIRFAN 77

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 6006866  282 HSCDGGNLSTVLLRSSGAllpRLCFFAAKDIIAEEELSFSYGD 324
Cdd:cd10519  78 HSSNPNCYAKVMMVNGDH---RIGIFAKRDIEAGEELFFDYGY 117
SET_ASH1L cd19174
SET domain (including post-SET domain) found in ASH1-like protein (ASH1L) and similar proteins; ...
 193-347 7.94e-24

SET domain (including post-SET domain) found in ASH1-like protein (ASH1L) and similar proteins; ASH1L (EC 2.1.1.43; also termed absent small and homeotic disks protein 1 homolog, KMT2H, or lysine N-methyltransferase 2H) acts as histone-lysine N-methyltransferase that specifically methylates 'Lys-36' of histone H3 (H3K36me). It plays important roles in development; heterozygous mutation of ASH1L is associated with severe intellectual disability (ID) and multiple congenital anomaly (MCA).


Pssm-ID: 380951 [Multi-domain]  Cd Length: 141  Bit Score: 95.44  E-value: 7.94e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNiydklrsTQSFASallvvREHLpsgqaCLRIN----I 268
Cdd:cd19174   2 LERFRTEDKGWGVRTKEPIKAGQFIIEYVGEVVSEQEFRRRMI-------EQYHNH-----SHHY-----CLNLDsgmvI 64

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6006866  269 DATRIGNVARFINHSCDgGNLSTVLLRSSGalLPRLCFFAAKDIIAEEELSFSYGDVSVageNRDDKLNCSCGSSCCLG 347
Cdd:cd19174  65 DGYRMGNEARFVNHSCD-PNCEMQKWSVNG--VYRIGLFALKDIPAGEELTYDYNFHSF---NVEKQQPCKCGSPNCRG 137
SET pfam00856
SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be ...
 202-323 1.39e-23

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.


Pssm-ID: 459965 [Multi-domain]  Cd Length: 115  Bit Score: 93.74  E-value: 1.39e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866    202 GWCLYADQLIKQGQFICEYAGE-LLTTDEARRRQNIYDKLRSTQSFASALLVVREhlpsgQACLRINIDATRIGNVARFI 280
Cdd:pfam00856   1 GRGLFATEDIPKGEFIGEYVEVlLITKEEADKRELLYYDKLELRLWGPYLFTLDE-----DSEYCIDARALYYGNWARFI 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 6006866    281 NHSCDgGNLSTVLLRSSGalLPRLCFFAAKDIIAEEELSFSYG 323
Cdd:pfam00856  76 NHSCD-PNCEVRVVYVNG--GPRIVIFALRDIKPGEELTIDYG 115
SET_NSD cd19173
SET domain (including post-SET domain) found in nuclear SET domain-containing proteins, NSD1, ...
 190-349 3.78e-22

SET domain (including post-SET domain) found in nuclear SET domain-containing proteins, NSD1, NSD2, NSD3 and similar proteins; The nuclear receptor-binding SET Domain (NSD) family of histone H3 lysine 36 methyltransferases is comprised of NSD1, NSD2, and NSD3, which are primarily known to be involved in chromatin integrity and gene expression through mono-, di-, or tri-methylating lysine 36 of histone H3 (H3K36), respectively. NSD1 (EC 2.1.1.43; also termed histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific, androgen receptor coactivator 267 kDa protein (ARA267), androgen receptor-associated protein of 267 kDa, H3-K36-HMTase, H4-K20-HMTase, lysine N-methyltransferase 3B (KMT3B) or NR-binding SET domain-containing protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4. NSD2 (EC 2.1.1.43; also termed multiple myeloma SET domain-containing protein (MMSET), protein trithorax-5 (TRX5), or wolf-Hirschhorn syndrome candidate 1 protein (WHSC1)) acts as histone-lysine N-methyltransferase with histone H3 'Lys-27' (H3K27me) methyltransferase activity. NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3.


Pssm-ID: 380950 [Multi-domain]  Cd Length: 142  Bit Score: 90.84  E-value: 3.78e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  190 SVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRqniYDKLRSTQSFASALLVVREHlpsgqaclRInID 269
Cdd:cd19173   1 YPPTEPFKTGDRGWGLRTKRDIKKGDFVIEYVGELIDEEECRRR---LKKAHENNITNFYMLTLDKD--------RI-ID 68

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  270 ATRIGNVARFINHSCDgGNLSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYGDVSVAgenrDDKLNCSCGSSCCLGTL 349
Cdd:cd19173  69 AGPKGNLSRFMNHSCQ-PNCETQKWTVNGD--TRVGLFAVRDIPAGEELTFNYNLDCLG----NEKKVCRCGAPNCSGFL 141
SET_SETDB2 cd10523
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 2 (SETDB2) ...
 169-349 1.60e-19

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 2 (SETDB2) and similar proteins; SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis.


Pssm-ID: 380921 [Multi-domain]  Cd Length: 266  Bit Score: 86.81  E-value: 1.60e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  169 ECGSGCGCGSD-CSNRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFA 247
Cdd:cd10523  85 ECNVSCKCNRMlCQNRVVQHGLQVRLQVFKTEKKGWGVRCLDDIDKGTFVCIYAGRVLSRARSPTEPLPPKLELPSENEV 164

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  248 SallVVREHL-PSGQACLRIN---IDATRIGNVARFINHSCDgGNL--STVLLRSSGALLPRLCFFAAKDIIAEEELSFS 321
Cdd:cd10523 165 E---VVTSWLiLSKKRKLRENvcfLDASKEGNVGRFLNHSCC-PNLfvQNVFVDTHDKNFPWVAFFTNRVVKAGTELTWD 240

                       170       180
                ....*....|....*....|....*...
gi 6006866  322 YGdvSVAGENRDDKLNCSCGSSCCLGTL 349
Cdd:cd10523 241 YS--YDAGTSPEQEIPCLCGVNKCQKKI 266
SET_SETDB cd10541
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1), ...
 169-349 1.44e-18

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1), SET domain bifurcated 2 (SETDB2), and similar proteins; SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis.


Pssm-ID: 380939 [Multi-domain]  Cd Length: 236  Bit Score: 83.75  E-value: 1.44e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  169 ECGSGCGCGSD-CSNRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRrqniyDKLRSTQSFA 247
Cdd:cd10541  69 ECNKLCKCDPNmCQNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGTFVCIYAGKILTDDFADK-----EGLEMGDEYF 143

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  248 SALLVVREhlpsgqACLRinIDATRIGNVARFINHSCdGGNL--STVLLRSSGALLPRLCFFAAKDIIAEEELSFSYGdv 325
Cdd:cd10541 144 ANLDHIEE------SCYI--IDAKLEGNLGRYLNHSC-SPNLfvQNVFVDTHDLRFPWVAFFASKRIKAGTELTWDYN-- 212

                       170       180
                ....*....|....*....|....
gi 6006866  326 SVAGENRDDKLNCSCGSSCCLGTL 349
Cdd:cd10541 213 YEVGSVEGKELLCCCGSNECRGRL 236
SET COG2940
SET domain-containing protein (function unknown) [General function prediction only];
190-348 4.61e-18

SET domain-containing protein (function unknown) [General function prediction only];


Pssm-ID: 442183 [Multi-domain]  Cd Length: 134  Bit Score: 79.62  E-value: 4.61e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  190 SVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRsTQSFasallvvreHLPSGQAclrinID 269
Cdd:COG2940   5 HPRIEVRPSPIHGRGVFATRDIPKGTLIGEYPGEVITWAEAERREPHKEPLH-TYLF---------ELDDDGV-----ID 69

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6006866  270 ATRIGNVARFINHSCDgGNLSTVLLRssgallPRLCFFAAKDIIAEEELSFSYGdvsvaGENRDDKLNCSCGSscCLGT 348
Cdd:COG2940  70 GALGGNPARFINHSCD-PNCEADEED------GRIFIVALRDIAAGEELTYDYG-----LDYDEEEYPCRCPN--CRGT 134
SET_EZH-like cd19168
SET domain found in enhancer of zeste homolog 1 (EZH1) and zeste homolog 2 (EZH2) of polycomb ...
 202-324 7.37e-18

SET domain found in enhancer of zeste homolog 1 (EZH1) and zeste homolog 2 (EZH2) of polycomb repressive complex 2 (PRC2), and similar proteins; The family includes EZH1 and EZH2. EZH1 (EC 2.1.1.43; also termed ENX-2, or histone-lysine N-methyltransferase EZH1) is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. EZH2 (EC 2.1.1.43; also termed lysine N-methyltransferase 6, ENX-1, or histone-lysine N-methyltransferase EZH2) is a catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Both EZH1 and EZH2 can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. PRC2 is involved in several cancers; EZH2 is overexpressed in breast, liver and prostate cancer, while point mutations in EZH2 alter the substrate preference and product specificity of PRC2 in Non-Hodgkin lymphomas (NHLs). Thus, PRC2 is a popular target for cancer therapeutics.


Pssm-ID: 380945  Cd Length: 124  Bit Score: 78.77  E-value: 7.37e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  202 GWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRStqsfaSALLVVREhlpsgqaclRINIDATRIGNVARFIN 281
Cdd:cd19168  13 GLGLFAAEDIKEGEFVIEYTGELISHDEGVRREHRRGDVSY-----LYLFEEQE---------GIWVDAAIYGNLSRYIN 78

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 6006866  282 HS---CDGGNLSTVLLRSSGALlpRLCFFAAKDIIAEEELSFSYGD 324
Cdd:cd19168  79 HAtdkVKTGNCMPKIMYVNHEW--RIKFTAIKDIKIGEELFFNYGD 122
SET_SETD1-like cd10518
SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), ...
 182-345 1.55e-17

SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins; This family includes SET domain-containing protein 1A (SETD1A), 1B (SETD1B), as well as histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B), 2C (KMT2C), 2D (KMT2D). These proteins are histone-lysine N-methyltransferases (EC 2.1.1.43) that specifically methylate 'Lys-4' of histone H3 (H3K4me).


Pssm-ID: 380916  Cd Length: 150  Bit Score: 78.41  E-value: 1.55e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  182 NRVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDK--LRSTQSFasallvvrehlps 259
Cdd:cd10518   5 FRQLRSRLKERLRVGKSGIHGWGLFAKRPIAAGEMVIEYVGEVIRPIVADKREKRYDEegGGGTYMF------------- 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  260 gqaclRIN----IDATRIGNVARFINHSCDGGNLSTVLlrsSGALLPRLCFFAAKDIIAEEELSFSYGDVSVAGEnrddK 335
Cdd:cd10518  72 -----RIDedlvIDATKKGNIARFINHSCDPNCYAKII---TVDGEKHIVIFAKRDIAPGEELTYDYKFPIEDEE----K 139

                       170
                ....*....|
gi 6006866  336 LNCSCGSSCC 345
Cdd:cd10518 140 IPCLCGAPNC 149
SET_ASHR3-like cd19175
SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 ...
 193-349 3.39e-17

SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins; This family includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3, also termed protein SET DOMAIN GROUP 4 or protein stamen loss), ASH1 homolog 3 (ASHH3, also termed protein SET DOMAIN GROUP 7) and homolog 4 (ASHH4, also termed protein SET DOMAIN GROUP 24). They all function as histone-lysine N-methyltransferases (EC 2.1.1.43).


Pssm-ID: 380952 [Multi-domain]  Cd Length: 139  Bit Score: 77.07  E-value: 3.39e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLttDEARRRQNIYD-KLRSTQSFaSALLVVREhlpsgqaclrINIDAT 271
Cdd:cd19175   2 MKLVKTEKCGWGLVADEDINAGEFIIEYVGEVI--DDKTCEERLWDmKHKGEKNF-YMCEIDKD----------MVIDAT 68

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6006866  272 RIGNVARFINHSCDGgnlSTVLLRSSGALLPRLCFFAAKDIIAEEELSFSYGDVSVaGENRDdklnCSCGSSCCLGTL 349
Cdd:cd19175  69 FKGNLSRFINHSCDP---NCELQKWQVDGETRIGVFAIRDIKKGEELTYDYQFVQF-GADQD----CHCGSKNCRGKL 138
SET_NSD2 cd19211
SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) ...
 194-349 1.46e-16

SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins; NSD2 (EC 2.1.1.43; also termed multiple myeloma SET domain-containing protein (MMSET), protein trithorax-5 (TRX5), or wolf-Hirschhorn syndrome candidate 1 protein (WHSC1)) acts as histone-lysine N-methyltransferase with histone H3 'Lys-36' (H3K36me) methyltransferase activity. NSD2 has been shown to mediate di- and trimethylation of H3K36 and dimethylation of H4K20 in different systems, and has been characterized as a transcriptional repressor interacting with histone deacetylase HDAC1 and histone demethylase LSD1. NSD2 mediates constitutive NF-kappaB signaling for cancer cell proliferation, survival and tumor growth. It is highly overexpressed in several types of human cancers, including small-cell lung cancers, neuroblastoma, carcinomas of stomach and colon, and bladder cancers, and its overexpression tends to be associated with tumor aggressiveness. WHSC1 is frequently deleted in Wolf-Hirschhorn syndrome (WHS).


Pssm-ID: 380988 [Multi-domain]  Cd Length: 142  Bit Score: 75.41  E-value: 1.46e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  194 KIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARrrqniyDKLRSTQsfasallvvrEHLPSGQACLRIN----ID 269
Cdd:cd19211   5 KIIKTEGKGWGLIAKRDIKKGEFVNEYVGELIDEEECM------ARIKHAH----------ENDITHFYMLTIDkdriID 68

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  270 ATRIGNVARFINHSCDgGNLSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYgDVSVAGenrDDKLNCSCGSSCCLGTL 349
Cdd:cd19211  69 AGPKGNYSRFMNHSCQ-PNCETQKWTVNGD--TRVGLFAVCDIPAGTELTFNY-NLDCLG---NEKTVCRCGAPNCSGFL 141
SET_EZH1 cd19217
SET domain found in enhancer of zeste homolog 1 (EZH1) and similar proteins; EZH1 (EC 2.1.1.43) ...
 186-322 2.29e-14

SET domain found in enhancer of zeste homolog 1 (EZH1) and similar proteins; EZH1 (EC 2.1.1.43), also termed ENX-2, or histone-lysine N-methyltransferase EZH1, is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. It can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively.


Pssm-ID: 380994  Cd Length: 136  Bit Score: 69.33  E-value: 2.29e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  186 QKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASALLVVrehlpsgqaclr 265
Cdd:cd19217   1 QRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELISQDEADRRGKVYDKYMSSFLFNLNNDFV------------ 68

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 6006866  266 inIDATRIGNVARFINHSCDGGNLSTVLLRSSGAllpRLCFFAAKDIIAEEELSFSY 322
Cdd:cd19217  69 --VDATRKGNKIRFANHSVNPNCYAKVVMVNGDH---RIGIFAKRAIQQGEELFFDY 120
SET_SET1 cd20072
SET domain (including post-SET domain) found in catalytic component of the Saccharomyces ...
 193-345 2.35e-14

SET domain (including post-SET domain) found in catalytic component of the Saccharomyces cerevisiae COMPASS complex and similar proteins; The family contains mostly fungal SET domains, including SET1 found in the catalytic component of the Saccharomyces cerevisiae COMPASS (complex of proteins associated with Set1). SET1 is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me), when part of the SET1 histone methyltransferase (HMT) complex. The activity of this catalytic domain is established through forming a complex with a set of core proteins; it is extensively contacted by Cps60 (Bre2), Cps50 (Swd1), and Cps30 (Swd3).


Pssm-ID: 380998  Cd Length: 148  Bit Score: 69.76  E-value: 2.35e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKlrsTQSFASALLVVREHLPsgqaclrinIDATR 272
Cdd:cd20072  15 LKFARSAIHNWGLYAMENISAKDMVIEYVGEVIRQQVADEREKRYLR---QGIGSSYLFRIDDDTV---------VDATK 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6006866  273 IGNVARFINHSCDgGNLSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYgdvsvAGENRDDKLNCSCGSSCC 345
Cdd:cd20072  83 KGNIARFINHCCD-PNCTAKIIKVEGE--KRIVIYAKRDIAAGEELTYDY-----KFPREEDKIPCLCGAPNC 147
SET_NSD3 cd19212
SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing ...
 194-349 6.99e-14

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 3 (NSD3) and similar proteins; NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3. NSD3 is amplified and overexpressed in multiple cancer types, including acute myeloid leukemia (AML), breast, lung, pancreatic and bladder cancers, as well as squamous cell carcinoma of the head and neck (SCCHN). NSD3 contributes to tumorigenesis by interacting with bromodomain-containing protein 4 (BRD4), the bromodomain and extraterminal (BET) protein, which is a potential therapeutic target in acute myeloid leukemia (AML). NSD3 is amplified in primary tumors and cell lines from breast carcinoma, and can promote the cell viability of small-cell lung cancer and pancreatic ductal adenocarcinoma. High NSD3 expression is implicated in poor grade and heavy smoking history in SCCHN. Thus, NSD3 may serve as a potential druggable target for selective cancer therapy.


Pssm-ID: 380989 [Multi-domain]  Cd Length: 142  Bit Score: 68.03  E-value: 6.99e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  194 KIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFasALLVVREHLpsgqaclrinIDATRI 273
Cdd:cd19212   5 EIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENSVTNFY--MLTVTKDRI----------IDAGPK 72

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6006866  274 GNVARFINHSCDgGNLSTVLLRSSGALlpRLCFFAAKDIIAEEELSFSYgDVSVAGENRDDklnCSCGSSCCLGTL 349
Cdd:cd19212  73 GNYSRFMNHSCN-PNCETQKWTVNGDV--RVGLFALCDIPAGMELTFNY-NLDCLGNGRTE---CHCGADNCSGFL 141
SET_LegAS4-like cd10522
SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and ...
 205-324 9.43e-14

SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and similar proteins; LegAS4 is a type IV secretion system effector of Legionella pneumophila. It contains a SET domain that is involved in the modification of Lys4 of histone H3 (H3K4) in the nucleolus of the host cell, thereby enhancing heterochromatic rDNA transcription. It also contains an ankyrin repeat domain of unknown function at its C-terminal region.


Pssm-ID: 380920 [Multi-domain]  Cd Length: 122  Bit Score: 66.98  E-value: 9.43e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  205 LYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASALLVvrehlpsgqaclrinIDATRIGNVARFINHSc 284
Cdd:cd10522  17 LFAAETIAKGEFVGEYTGEVLDRWEEDRDSVYHYDPLYPFDLNGDILV---------------IDAGKKGNLTRFINHS- 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 6006866  285 DGGNLSTVLLRSSGalLPRLCFFAAKDIIAEEELSFSYGD 324
Cdd:cd10522  81 DQPNLELIVRTLKG--EQHIGFVAIRDIKPGEELFISYGP 118
SET_EZH2 cd19218
SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins; EZH2 (EC 2.1.1.43) ...
 202-322 3.08e-13

SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins; EZH2 (EC 2.1.1.43), also termed lysine N-methyltransferase 6, or ENX-1, or histone-lysine N-methyltransferase EZH2, is a catalytic subunit of the polycomb repressive complex 2 (PRC2)/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. It can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. PRC2 is involved in several cancers; EZH2 is overexpressed in breast, liver and prostate cancer, while point mutations in EZH2 alter the substrate preference and product specificity of PRC2 in Non-Hodgkin lymphomas (NHLs). Thus, PRC2 is a popular target for cancer therapeutics.


Pssm-ID: 380995  Cd Length: 120  Bit Score: 65.70  E-value: 3.08e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  202 GWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLRSTQSFASALLVVrehlpsgqaclrinIDATRIGNVARFIN 281
Cdd:cd19218  15 GWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFV--------------VDATRKGNKIRFAN 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 6006866  282 HSCDGGNLSTVLLRSSGAllpRLCFFAAKDIIAEEELSFSY 322
Cdd:cd19218  81 HSVNPNCYAKVMMVNGDH---RIGIFAKRAIQTGEELFFDY 118
SET_KMT2C_2D cd19171
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), ...
 197-345 5.10e-13

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), 2D (KMT2D) and similar proteins; This family includes KMT2C and KMT2D. Both, KMT2C (also termed HALR or MLL3) and KMT2D (also termed ALR or MLL2), act as histone methyltransferases that methylate 'Lys-4' of histone H3 (H3K4me). They are subunits of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation.


Pssm-ID: 380948 [Multi-domain]  Cd Length: 153  Bit Score: 65.91  E-value: 5.10e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  197 RDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKL-RSTQSFasallvvrehlpsgqaclRIN----IDAT 271
Cdd:cd19171  20 RSRIQGLGLYAARDIEKHTMVIEYIGEIIRNEVANRREKIYESQnRGIYMF------------------RIDndwvIDAT 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6006866  272 RIGNVARFINHSCDGGNLSTVLLRSSGallPRLCFFAAKDIIAEEELSFSYG-DVsvagENRDDKLNCSCGSSCC 345
Cdd:cd19171  82 MTGGPARYINHSCNPNCVAEVVTFDKE---KKIIIISNRRIAKGEELTYDYKfDF----EDDQHKIPCLCGAPNC 149
SET_NSD1 cd19210
SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing ...
 193-349 7.85e-13

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins; NSD1 (EC 2.1.1.43; also termed Histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific, androgen receptor coactivator 267 kDa protein (ARA267), androgen receptor-associated protein of 267 kDa, H3-K36-HMTase, H4-K20-HMTase, lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4. NSD1 is altered in approximately 10% of head and neck cancer patients with 55% decrease in risk of death in NSD1-mutated versus non-mutated patients; its disruption promotes favorable chemotherapeutic responses linked to hypomethylation.


Pssm-ID: 380987 [Multi-domain]  Cd Length: 142  Bit Score: 65.33  E-value: 7.85e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRqniydkLRSTQsfasallvvrEHLPSGQACLRIN----I 268
Cdd:cd19210   4 VEIFRTLGRGWGLRCKTDIKKGEFVNEYVGELIDEEECRAR------IRYAQ----------EHDITNFYMLTLDkdriI 67

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  269 DATRIGNVARFINHSCDgGNLSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYgDVSVAGenrDDKLNCSCGSSCCLGT 348
Cdd:cd19210  68 DAGPKGNYARFMNHCCQ-PNCETQKWTVNGD--TRVGLFALCDIKAGTELTFNY-NLECLG---NGKTVCKCGAPNCSGF 140


                .
gi 6006866  349 L 349
Cdd:cd19210 141 L 141
SET_SETD1 cd19169
SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and ...
 193-345 2.85e-12

SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins; This family includes SET domain-containing protein 1A (SETD1A) and SET domain-containing protein 1B (SETD1B). These proteins are histone-lysine N-methyltransferases that specifically methylate 'Lys-4' of histone H3 (H3K4me) when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated.


Pssm-ID: 380946  Cd Length: 148  Bit Score: 63.51  E-value: 2.85e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKlrstQSFASALLvvrehlpsgqacLRIN----I 268
Cdd:cd19169  15 LKFAKSRIHDWGLFALEPIAADEMVIEYVGQVIRQSVADEREKRYEA----IGIGSSYL------------FRVDddtiI 78

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6006866  269 DATRIGNVARFINHSCDGGNLSTVLlrsSGALLPRLCFFAAKDIIAEEELSFSYgdvsvAGENRDDKLNCSCGSSCC 345
Cdd:cd19169  79 DATKCGNLARFINHSCNPNCYAKII---TVESQKKIVIYSKRPIAVNEEITYDY-----KFPIEDEKIPCLCGAPQC 147
SET_KMT2A_2B cd19170
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A), ...
 205-349 3.63e-12

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B) and similar proteins; This family includes KMT2A and KMT2B. Both KMT2A (also termed ALL-1 or CXXC7 or MLL or MLL1 or TRX1 or HRX) and KMT2B (also termed MLL4 or TRX2) act as histone methyltransferases that methylate 'Lys-4' of histone H3 (H3K4me).


Pssm-ID: 380947 [Multi-domain]  Cd Length: 152  Bit Score: 63.56  E-value: 3.63e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  205 LYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKlrstqsfasallvvrehlpSGQAC--LRIN----IDATRIGNVAR 278
Cdd:cd19170  28 LFCKRNIDAGEMVIEYAGEVIRSVLTDKREKYYES-------------------KGIGCymFRIDddevVDATMHGNAAR 88

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6006866  279 FINHSCDGGNLSTVLLRSSgalLPRLCFFAAKDIIAEEELSFSYgdvSVAGEnrDDKLNCSCGSSCCLGTL 349
Cdd:cd19170  89 FINHSCEPNCYSRVVNIDG---KKHIVIFALRRILRGEELTYDY---KFPIE--DVKIPCTCGSKKCRKYL 151
SET_KMT2A cd19206
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A) ...
 183-345 1.39e-10

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A) and similar proteins; KMT2A (EC2.1.1.43; also termed lysine N-methyltransferase 2A, ALL-1, CXXC-type zinc finger protein 7 (CXXC7), myeloid/lymphoid or mixed-lineage leukemia (MLL), myeloid/lymphoid or mixed-lineage leukemia protein 1 (MLL1), trithorax-like protein (TRX1), or zinc finger protein HRX) acts as a histone methyltransferase that plays an essential role in early development and hematopoiesis. It is a catalytic subunit of the MLL1/MLL complex, a multiprotein complex that mediates both methylation of 'Lys-4' of histone H3 (H3K4me) complex and acetylation of 'Lys-16' of histone H4 (H4K16ac).


Pssm-ID: 380983 [Multi-domain]  Cd Length: 154  Bit Score: 59.27  E-value: 1.39e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  183 RVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKlrstqsfasallvvrehlpSGQA 262
Cdd:cd19206   6 RHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYSGNVIRSILTDKREKYYDS-------------------KGIG 66

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  263 C--LRIN----IDATRIGNVARFINHSCDGGNLSTVlLRSSGAllPRLCFFAAKDIIAEEELSFSYgdvSVAGENRDDKL 336
Cdd:cd19206  67 CymFRIDdsevVDATMHGNAARFINHSCEPNCYSRV-INIDGQ--KHIVIFAMRKIYRGEELTYDY---KFPIEDASNKL 140


                ....*....
gi 6006866  337 NCSCGSSCC 345
Cdd:cd19206 141 PCNCGAKKC 149
SET_SETD1A cd19204
SET domain (including post-SET domain) found in SET domain-containing protein 1A (SETD1A) and ...
 193-349 3.11e-10

SET domain (including post-SET domain) found in SET domain-containing protein 1A (SETD1A) and similar proteins; SETD1A (EC2.1.1.43), also termed lysine N-methyltransferase 2F, or Set1/Ash2 histone methyltransferase complex subunit SET1, is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me), when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. Human SET domain containing protein 1A (hSETD1A) expression occurs at a high rate in hepatocellular carcinoma patients and controls tumor metastasis in breast cancer by activating MMP expression.


Pssm-ID: 380981 [Multi-domain]  Cd Length: 153  Bit Score: 58.11  E-value: 3.11e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYdklrSTQSFASALLVVREHlpsgqaclRINIDATR 272
Cdd:cd19204  16 LRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIRQVVADMREKRY----VQEGIGSSYLFRVDH--------DTIIDATK 83

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6006866  273 IGNVARFINHSCDGGNLSTVLLRSSGAllpRLCFFAAKDIIAEEELSFSYgdvsvAGENRDDKLNCSCGSSCCLGTL 349
Cdd:cd19204  84 CGNLARFINHCCTPNCYAKVITIESQK---KIVIYSKQPIGVNEEITYDY-----KFPIEDNKIPCLCGTENCRGTL 152
SET_SETD1B cd19205
SET domain (including post-SET domain) found in SET domain-containing protein 1B (SETD1B) and ...
 193-349 1.21e-09

SET domain (including post-SET domain) found in SET domain-containing protein 1B (SETD1B) and similar proteins; SETD1B (EC2.1.1.43), also termed lysine N-methyltransferase 2G, is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me) when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. Loss of SETD1B occurs in up to half the gastric and colorectal cancers, most commonly via SETD1B mutations, while de novo variants in SETD1B are associated with intellectual disability, epilepsy and autism.


Pssm-ID: 380982 [Multi-domain]  Cd Length: 153  Bit Score: 56.22  E-value: 1.21e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKlrstQSFASALLVVREHlpsgqaclRINIDATR 272
Cdd:cd19205  16 LKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIADMREKRYED----EGIGSSYMFRVDH--------DTIIDATK 83

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6006866  273 IGNVARFINHSCDGGNLSTVLLRSSGAllpRLCFFAAKDIIAEEELSFSYgdvsvAGENRDDKLNCSCGSSCCLGTL 349
Cdd:cd19205  84 CGNFARFINHSCNPNCYAKVITVESQK---KIVIYSKQHINVNEEITYDY-----KFPIEDVKIPCLCGSENCRGTL 152
SET cd08161
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, ...
 251-323 1.76e-08

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, Enhancer-of-zeste, Trithorax (SET) domain superfamily corresponds to SET domain-containing lysine methyltransferases, which catalyze site and state-specific methylation of lysine residues in histones that are fundamental in epigenetic regulation of gene activation and silencing in eukaryotic organisms. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains has been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as N-SET and C-SET. C-SET forms an unusual and conserved knot-like structure of probable functional importance. In addition to N-SET and C-SET, an insert region (I-SET) and flanking regions of high structural variability form part of the overall structure. Some family members contain a pre-SET domain, which is found in a number of histone methyltransferases (HMTase), and a post-SET domain, which harbors a zinc-binding site.


Pssm-ID: 380914 [Multi-domain]  Cd Length: 72  Bit Score: 50.71  E-value: 1.76e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6006866  251 LVVREHLPSGqaclrinidaTRIGnVARFINHSCDGgNLSTVLLRSSGalLPRLCFFAAKDIIAEEELSFSYG 323
Cdd:cd08161  14 LFATRDIPKG----------EVIG-LARFINHSCEP-NCEFEEVYVGG--KPRVFIVALRDIKAGEELTVDYG 72
SET_SpSET3-like cd19183
SET domain (including post-SET domain) found in Schizosaccharomyces pombe SET ...
 204-323 3.40e-08

SET domain (including post-SET domain) found in Schizosaccharomyces pombe SET domain-containing protein 3 (SETD3) and similar proteins; Schizosaccharomyces pombe SETD3 functions as a transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. It is required for both, gene activation and repression.


Pssm-ID: 380960  Cd Length: 173  Bit Score: 52.41  E-value: 3.40e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  204 CLYADQLIKQGQFICEYAGELLTTDEARRR-QNIYDKLRSTQSFasalLVVREHLPsgqaclrINIDATRIGNVARFINH 282
Cdd:cd19183  15 GLFADRPIPAGDPIQELLGEIGLQSEYIADpENQYQILGAPKPH----VFFHPQSP-------LYIDTRRSGSVARFIRR 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 6006866  283 SCDgGNLSTVLLRSSGALLPRLCFFAAKDIIAEEELSFSYG 323
Cdd:cd19183  84 SCR-PNAELVTVASDSGSVLKFVLYASRDISPGEEITIGWD 123
SET_SETD5-like cd10529
SET domain found in SET domain-containing protein 5 (SETD5), inactive histone-lysine ...
 205-322 3.95e-08

SET domain found in SET domain-containing protein 5 (SETD5), inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. KMT2E (also termed inactive lysine N-methyltransferase 2E or myeloid/lymphoid or mixed-lineage leukemia protein 5 (MLL5)) associates with chromatin regions downstream of transcriptional start sites of active genes and thus regulates gene transcription. The family also includes Saccharomyces cerevisiae SET domain-containing proteins, SET3 and SET4, and Schizosaccharomyces pombe SET3. Most of these family members contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380927  Cd Length: 127  Bit Score: 51.51  E-value: 3.95e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  205 LYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKLrstQSFasallVVREHLPSGQAclrINIDATRIGNVARFINHSC 284
Cdd:cd10529  19 LVATEDISPGEPILEYKGEVSLRSEFKEDNGFFKRP---SPF-----VFFYDGFEGLP---LCVDARKYGNEARFIRRSC 87

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 6006866  285 DgGNLSTVLLRSSGALLpRLCFFAAKDIIAEEE--LSFSY 322
Cdd:cd10529  88 R-PNAELRHVVVSNGEL-RLFIFALKDIRKGTEitIPFDY 125
SET_ATXR5_6-like cd10539
SET domain found in fungal protein lysine methyltransferase SET5 and similar protein; The ...
 193-322 3.96e-08

SET domain found in fungal protein lysine methyltransferase SET5 and similar protein; The family includes Arabidopsis thaliana ATXR5 and ATXR6. Both ATXR5 (also termed protein SET DOMAIN GROUP 15, or TRX-related protein 5) and ATXR6 (also termed protein SET DOMAIN GROUP 34, or TRX-related protein 6) function as histone methyltransferase that specifically monomethylates 'Lys-37' of histone H3 (H3K27me1). They are required for chromatin structure and gene silencing.


Pssm-ID: 380937  Cd Length: 138  Bit Score: 51.64  E-value: 3.96e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  193 LKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTdearrRQNIYDKLRStqsfasallvVREHLPSGQACLRINIDATR 272
Cdd:cd10539   6 LLVVFDPREGFTVEADGFIKDLTIIAEYTGDVDYI-----RNREFDDNDS----------IMTLLLAGDPSKSLVICPDK 70

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 6006866  273 IGNVARFI----NHSCDG---GNLSTVLLRSSGALlpRLCFFAAKDIIAEEELSFSY 322
Cdd:cd10539  71 RGNIARFIsginNHTKDGkkkQNCKCVRYSINGEA--RVLLVATRDIAKGERLYYDY 125
SET_KMT2B cd19207
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2B (KMT2B) ...
 183-345 6.04e-08

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2B (KMT2B) and similar proteins; KMT2B (EC2.1.1.43; also termed lysine N-methyltransferase 2B, myeloid/lymphoid or mixed-lineage leukemia protein 4 (MLL2/MLL4), trithorax homolog 2 (TRX2), or WW domain-binding protein 7 (WBP-7)), acts as a histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me). It is required during the transcriptionally active period of oocyte growth for the establishment and/or maintenance of bulk H3K4 trimethylation (H3K4me3), global transcriptional silencing that precedes resumption of meiosis, oocyte survival and normal zygotic genome activation.


Pssm-ID: 380984 [Multi-domain]  Cd Length: 154  Bit Score: 51.56  E-value: 6.04e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  183 RVTQKGVSVSLKIVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYDKlrstqsfasallvvrehlpSGQA 262
Cdd:cd19207   6 RHLKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRSVLTDKREKFYDS-------------------KGIG 66

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  263 C--LRIN----IDATRIGNVARFINHSCDGGNLSTVLLRSSGAllpRLCFFAAKDIIAEEELSFSYgdvSVAGENRDDKL 336
Cdd:cd19207  67 CymFRIDdfdvVDATMHGNAARFINHSCEPNCYSRVIHVEGQK---HIVIFALRKIYRGEELTYDY---KFPIEDASNKL 140


                ....*....
gi 6006866  337 NCSCGSSCC 345
Cdd:cd19207 141 PCNCGAKRC 149
SET_KMT2D cd19209
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2D (KMT2D) ...
 195-345 1.68e-07

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2D (KMT2D) and similar proteins; KMT2D (EC2.1.1.43; also termed lysine N-methyltransferase 2D, ALL1-related protein (ALR), or myeloid/lymphoid or mixed-lineage leukemia protein 2 (MLL2)), acts as histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me). It is a coactivator for estrogen receptor by being recruited by ESR1, thereby activating transcription. KMT2D is a subunit of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation.


Pssm-ID: 380986 [Multi-domain]  Cd Length: 155  Bit Score: 50.08  E-value: 1.68e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  195 IVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYdklrstqsfasallvvrEHLPSGQACLRIN----IDA 270
Cdd:cd19209  20 LARSRIQGLGLYAAKDLEKHTMVIEYIGTIIRNEVANRREKIY-----------------EEQNRGIYMFRINnehvIDA 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6006866  271 TRIGNVARFINHSCDGGNLSTVLLRSSGallPRLCFFAAKDIIAEEELSFSYgdvSVAGENRDDKLNCSCGSSCC 345
Cdd:cd19209  83 TLTGGPARYINHSCAPNCVAEVVTFDKE---DKIIIISSRRIPKGEELTYDY---QFDFEDDQHKIPCHCGAWNC 151
AWS smart00570
associated with SET domains; subdomain of PRESET
 141-190 8.90e-07

associated with SET domains; subdomain of PRESET


Pssm-ID: 197795  Cd Length: 50  Bit Score: 45.47  E-value: 8.90e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 6006866     141 DESGCECERCE--EGYCK--CLAFAgmeeIANECGSGCGCGSDCSNRVTQKGVS 190
Cdd:smart00570   1 DIMTCECKPTDddETACGsdCLNRM----LFIECSSSCPCGSYCSNQRFQKRQY 50
SET_KMT2C cd19208
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C) ...
 195-345 2.68e-06

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C) and similar proteins; KMT2C (EC2.1.1.43; also termed lysine N-methyltransferase 2C, homologous to ALR protein (HALR) myeloid/lymphoid, or mixed-lineage leukemia protein 3 (MLL3)), acts as a histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me) and may be involved in leukemogenesis and developmental disorder. KMT2C is a catalytic subunit of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation. Overexpression of KMT2C is associated with estrogen receptor-positive breast cancer; KMT2C mediates the estrogen dependence of breast cancer through regulation of estrogen receptor alpha (ERalpha) enhancer function. KMT2C is frequently mutated in certain populations with diffuse-type gastric adenocarcinomas (DGA); its loss promotes epithelial-to-mesenchymal transition (EMT) and is associated with worse overall survival.


Pssm-ID: 380985 [Multi-domain]  Cd Length: 154  Bit Score: 46.54  E-value: 2.68e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  195 IVRDEKKGWCLYADQLIKQGQFICEYAGELLTTDEARRRQNIYdklrstqsfasallvvrEHLPSGQACLRIN----IDA 270
Cdd:cd19208  19 LARSRIQGLGLYAARDIEKHTMVIEYIGTIIRNEVANRKEKLY-----------------ESQNRGVYMFRIDndhvIDA 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6006866  271 TRIGNVARFINHSCDGGNLSTVLLRSSGAllpRLCFFAAKDIIAEEELSFSYgdvSVAGENRDDKLNCSCGSSCC 345
Cdd:cd19208  82 TLTGGPARYINHSCAPNCVAEVVTFEKGH---KIIISSSRRIQKGEELCYDY---KFDFEDDQHKIPCHCGAVNC 150
Pre-SET pfam05033
Pre-SET motif; This protein motif is a zinc binding motif. It contains 9 conserved cysteines ...
 70-183 8.41e-06

Pre-SET motif; This protein motif is a zinc binding motif. It contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilising SET domains.


Pssm-ID: 461530 [Multi-domain]  Cd Length: 99  Bit Score: 43.95  E-value: 8.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866     70 ARSLENISIPFHNSIDSQR-YAYFIYTPfqipasspppprqwwgaaanecgsesRPCFDSvsesgrfGVSLVDESGCECE 148
Cdd:pfam05033   2 SKGKENVPIPVVNEVDDEPpPPDFTYIT--------------------------SYIYPK-------EFLLIIPQGCDCG 48

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 6006866    149 RCEEGYCKCLAFAGMEEIAN----------------ECGSGCGCGSDCSNR 183
Cdd:pfam05033  49 DCSSEKCSCAQLNGGEFRFPydkdgllvpeskppiyECNPLCGCPPSCPNR 99
SET_SMYD cd20071
SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing ...
 198-345 2.71e-03

SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing protein, and similar proteins; The family includes SET and MYND domain-containing proteins, SMYD1-SYMD5. SMYD1 (EC 2.1.1.43; also termed BOP) is a heart and muscle specific SET-MYND domain containing protein, which functions as a histone methyltransferase and regulates downstream gene transcription. It methylates histone H3 at 'Lys-4' (H3K4me), seems able to perform both mono-, di-, and trimethylation. SMYD2 (also termed HSKM-B, or lysine N-methyltransferase 3C (KMT3C)) functions as a histone methyltransferase that methylates both histones and non-histone proteins, including p53/TP53 and RB1. It specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). SMYD3 (also termed zinc finger MYND domain-containing protein 1) functions as a histone methyltransferase that specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. It also methylates 'Lys-5' of histone H4. SMYD3 plays an important role in transcriptional activation as a member of an RNA polymerase complex. SMYD4 functions as a potential tumor suppressor that plays a critical role in breast carcinogenesis at least partly through inhibiting the expression of PDGFR-alpha. SMYD5 (also termed protein NN8-4AG, or retinoic acid-induced protein 15) functions as histone lysine methyltransferase that mediates H4K20me3 at heterochromatin regions.


Pssm-ID: 380997 [Multi-domain]  Cd Length: 122  Bit Score: 37.36  E-value: 2.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6006866  198 DEKKGWCLYADQLIKQGQFICEYAGELLTTDearrrqNIYDKLRSTQSFASALLVVrehlpsgqaclrinidatrignvA 277
Cdd:cd20071   6 EGSKGRGLVATRDIEPGELILVEKPLVSVPS------NSFSLTDGLNEIGVGLFPL-----------------------A 56

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6006866  278 RFINHSCDggnlSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYGDVSVAGENRDDKLNCSCGSSCC 345
Cdd:cd20071  57 SLLNHSCD----PNAVVVFDGN--GTLRVRALRDIKAGEELTISYIDPLLPRTERRRELLEKYGFTCS 118
SET_Suv4-20-like cd10524
SET domain (including post-SET domain) found in Drosophila melanogaster suppressor of ...
 277-344 6.44e-03

SET domain (including post-SET domain) found in Drosophila melanogaster suppressor of variegation 4-20 (Suv4-20) and similar proteins; Suv4-20 (also termed Su(var)4-20) is a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-20' of histone H4. It acts as a dominant suppressor of position-effect variegation. The family also includes Suv4-20 homologs, lysine N-methyltransferase 5B (KMT5B) and lysine N-methyltransferase 5C (KMT5C). Both KMT5B (also termed lysine-specific methyltransferase 5B, or suppressor of variegation 4-20 homolog 1, or Su(var)4-20 homolog 1, or Suv4-20h1) and KMT5C (also termed lysine-specific methyltransferase 5C, or suppressor of variegation 4-20 homolog 2, or Su(var)4-20 homolog 2, or Suv4-20h2) are histone methyltransferases that specifically trimethylate 'Lys-20' of histone H4 (H4K20me3). They play central roles in the establishment of constitutive heterochromatin in pericentric heterochromatin regions.


Pssm-ID: 380922 [Multi-domain]  Cd Length: 141  Bit Score: 36.49  E-value: 6.44e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6006866  277 ARFINHSCDggnlSTVLLRSSGAllPRLCFFAAKDIIAEEELSFSYGDVSVAGENRDdklnCSCgSSC 344
Cdd:cd10524  77 AAFINHDCR----PNCKFVPTGK--STACVKVLRDIEPGEEITVYYGDNYFGENNEE----CEC-ETC 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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