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Conserved domains on  [gi|5915950|gb|AAD55827|]
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cytochrome b, partial (mitochondrion) [Gallotia simonyi simonyi]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-271 0e+00

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 532.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     1 MSTNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    81 RNIHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNN 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   161 LVQWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 5915950   241 LYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKP 271
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-271 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 532.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     1 MSTNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    81 RNIHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNN 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   161 LVQWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 5915950   241 LYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKP 271
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
19-271 2.75e-98

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 293.23  E-value: 2.75e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   19 FIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMH 98
Cdd:COG1290  27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   99 IGRGLYYGSY-----LfveTWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAIDN 173
Cdd:COG1290 107 MFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGD 183

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950  174 ATLTRFFTLH-FLLPFMILGTSMIHLLFLHETGSNNPTG----LNSNSDKIPFHPYYSYKDALGALLLLTLLLYLSLFSP 248
Cdd:COG1290 184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                       250       260
                ....*....|....*....|...
gi 5915950  249 ylLGDPENFTPANPLVTPPHIKP 271
Cdd:COG1290 264 --INPPPNYGPANPLATPAHIQP 284
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.62e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 279.25  E-value: 1.62e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   10 PIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   90 LFFICIYMHIGRGLYYGSY--LFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 5915950  168 GFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.93e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 257.70  E-value: 2.93e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     19 FIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     99 IGRGLYYG--SYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAIDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 5915950    177 TRFFTLHFLLPFMILGTSMIHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-271 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 532.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     1 MSTNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    81 RNIHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNN 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   161 LVQWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 5915950   241 LYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKP 271
CYTB MTH00131
cytochrome b; Provisional
 3-271 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 513.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     3 TNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRN 82
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    83 IHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLV 162
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   163 QWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLY 242
Cdd:MTH00131 162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTS 241

                        250       260
                 ....*....|....*....|....*....
gi 5915950   243 LSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00131 242 LALFSPNLLGDPDNFTPANPLVTPPHIKP 270
CYTB MTH00074
cytochrome b; Provisional
 1-271 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 512.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     1 MSTNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    81 RNIHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNN 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   161 LVQWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 5915950   241 LYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQP 271
CYTB MTH00100
cytochrome b; Provisional
 3-271 5.11e-180

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 499.93  E-value: 5.11e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     3 TNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRN 82
Cdd:MTH00100   2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    83 IHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLV 162
Cdd:MTH00100  82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   163 QWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLY 242
Cdd:MTH00100 162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241

                        250       260
                 ....*....|....*....|....*....
gi 5915950   243 LSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00100 242 LVLFSPDLLGDPDNYTPANPLNTPPHIKP 270
CYTB MTH00191
cytochrome b; Provisional
 5-271 1.74e-178

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 495.59  E-value: 1.74e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     5 LRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    85 ANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   165 VWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLYLS 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260
                 ....*....|....*....|....*..
gi 5915950   245 LFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKP 267
CYTB MTH00156
cytochrome b; Provisional
 12-271 1.57e-175

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 487.75  E-value: 1.57e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    12 IKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    92 FICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAI 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   172 DNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLYLSLFSPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260
                 ....*....|....*....|
gi 5915950   252 GDPENFTPANPLVTPPHIKP 271
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQP 260
CYTB MTH00145
cytochrome b; Provisional
 1-271 1.76e-167

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 468.23  E-value: 1.76e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     1 MSTNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLI 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    81 RNIHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNN 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   161 LVQWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 5915950   241 LYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQP 271
CYTB MTH00016
cytochrome b; Validated
 1-271 2.61e-161

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 452.59  E-value: 2.61e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     1 MSTNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    81 RNIHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNN 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   161 LVQWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 5915950   241 LYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKP 271
CYTB MTH00034
cytochrome b; Validated
 5-271 5.76e-161

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 451.85  E-value: 5.76e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     5 LRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    85 ANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQW 164
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   165 VWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLYLS 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260
                 ....*....|....*....|....*..
gi 5915950   245 LFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQP 270
CYTB MTH00224
cytochrome b; Provisional
 1-271 2.16e-140

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 399.68  E-value: 2.16e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     1 MSTNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    81 RNIHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNN 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   161 LVQWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 5915950   241 LYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKP 271
CYTB MTH00053
cytochrome b; Provisional
 1-271 2.60e-134

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 384.44  E-value: 2.60e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     1 MSTNLRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    81 RNIHANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNN 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   161 LVQWVWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270
                 ....*....|....*....|....*....|.
gi 5915950   241 LYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKP 271
CYTB MTH00022
cytochrome b; Validated
 5-271 3.00e-134

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 384.05  E-value: 3.00e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     5 LRKQHPIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    85 ANGASLFFICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQW 164
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   165 VWGGFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLYLS 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260
                 ....*....|....*....|....*..
gi 5915950   245 LFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQP 269
CYTB MTH00033
cytochrome b; Provisional
 17-271 1.43e-98

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 293.77  E-value: 1.43e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    17 SSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    97 MHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAIDNATL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   177 TRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLYLSLFS--PYLLGDP 254
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                        250
                 ....*....|....*..
gi 5915950   255 ENFTPANPLVTPPHIKP 271
Cdd:MTH00033 253 ENFIQANPLVTPVHIQP 269
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
19-271 2.75e-98

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 293.23  E-value: 2.75e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   19 FIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMH 98
Cdd:COG1290  27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   99 IGRGLYYGSY-----LfveTWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAIDN 173
Cdd:COG1290 107 MFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGD 183

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950  174 ATLTRFFTLH-FLLPFMILGTSMIHLLFLHETGSNNPTG----LNSNSDKIPFHPYYSYKDALGALLLLTLLLYLSLFSP 248
Cdd:COG1290 184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                       250       260
                ....*....|....*....|...
gi 5915950  249 ylLGDPENFTPANPLVTPPHIKP 271
Cdd:COG1290 264 --INPPPNYGPANPLATPAHIQP 284
CYTB MTH00086
cytochrome b; Provisional
 13-271 1.52e-96

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 287.22  E-value: 1.52e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    13 KIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    93 ICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAID 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   173 NATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDAlGALLLLTLLLYLSLFSPYLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA-YNIIFWLVFIIFSLFYPFNLG 239

                        250
                 ....*....|....*....
gi 5915950   253 DPENFTPANPLVTPPHIKP 271
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVP 258
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.62e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 279.25  E-value: 1.62e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   10 PIIKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   90 LFFICIYMHIGRGLYYGSY--LFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 5915950  168 GFAIDNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.93e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 257.70  E-value: 2.93e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     19 FIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     99 IGRGLYYG--SYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAIDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 5915950    177 TRFFTLHFLLPFMILGTSMIHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 12-271 7.34e-72

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 224.48  E-value: 7.34e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    12 IKIINSSFIDLPTPSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLF 91
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    92 FICIYMHIGRGLYYGSYLFVETWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAI 171
Cdd:MTH00046  82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   172 DNATLTRFFTLHFLLPFMILGTSMIHLLFLHETGSNNPTGL-NSNSDKIPFHPYYSYKDALGALLLLTLLLYLSLFSPYL 250
Cdd:MTH00046 162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                        250       260
                 ....*....|....*....|.
gi 5915950   251 LGDPENFTPANPLVTPPHIKP 271
Cdd:MTH00046 242 VLDIEAYLEADPLVTPVSIKP 262
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 1.60e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.86  E-value: 1.60e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950     89 SLFFICIYMHIGRGLYYGSYLFVE--TWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    167 GGFAIDNATLTRFFTLHF-LLPFMILGTSMIHLLFLHETGSNNPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLYLSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 5915950    246 FSPYLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 34-209 6.98e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.91  E-value: 6.98e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    34 FGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMHIGRGLYYGSYLFVE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   113 -TWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAIDNATLTRFFTLH-FLLPFMI 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 5915950   191 LGTSMIHLLFLHETGSNNP 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 25-209 6.01e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 114.43  E-value: 6.01e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950    25 PSNISAWWNFGSLLGLCLITQIVTGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMHIGRGLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5915950   105 YGSYLFVE--TWNIGVILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGNNLVQWVWGGFAIDNATLTRFFTL 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 5915950   183 H-FLLPFMILGTSMIHLLFLHETGSNNP 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-271 1.31e-14

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 69.21  E-value: 1.31e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5915950  208 NPTGLNSNSDKIPFHPYYSYKDALGALLLLTLLLYLSLFSPYLLGDPENFTPANPLVTPPHIKP 271
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILP 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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