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Conserved domains on  [gi|5668785|gb|AAD46011|]
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Similar to gb|X57297 TAM1 protein of transposon TNP2 from Antirrhinum majus [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transposase_21 super family cl29371
Transposase family tnp2; Transposase_21 proteins are present mostly in plants, with members ...
 295-347 1.24e-19

Transposase family tnp2; Transposase_21 proteins are present mostly in plants, with members horizontally transferred to Bifidobacterium breve (GI: 291457831). Both DUF1258 pfam06869 and Transposase_21 have conserved active site residues similar to RNase H-like proteins, which suggests that they are functional transposases (1).


The actual alignment was detected with superfamily member pfam02992:

Pssm-ID: 475188  Cd Length: 211  Bit Score: 87.44  E-value: 1.24e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 5668785    295 DGNISHPSDAEAWKHFNSMYKDFANEHRNVYLGLCTDGFNPFGKSGRKYSLWP 347
Cdd:pfam02992   1 DGLLRHPADSEAWKDFDRKHPEFAEDPRNVRLGLATDGFNPFGSMSSSYSMWP 53
Transpos_assoc super family cl16504
Transposase-associated domain;
13-77 3.30e-13

Transposase-associated domain;


The actual alignment was detected with superfamily member pfam13963:

Pssm-ID: 433610  Cd Length: 74  Bit Score: 64.65  E-value: 3.30e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5668785     13 TKEFKEGLVDFMRFAANQeiPLECGKMYCPCSTCGNEKFLPVDSIWKHLYSRGFMPGYYIWFSHG 77
Cdd:pfam13963  11 SPEYIEGVNNFLKFAFSR--RPNGDAILCPCKKCRNRKWMDRNEVHEHLICYGFMPGYTVWVYHG 73
Transposase_24 super family cl03830
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 352-437 1.05e-07

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


The actual alignment was detected with superfamily member pfam03004:

Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 50.90  E-value: 1.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5668785    352 TGELPDMVTFMEATHkRKSDGVFVCKKAELIAKKCRnmehQILSQRDNDDGDTLETSHLTQEEIDAIYQGEVQVNK-GKK 430
Cdd:pfam03004  53 KGRTPTRAEVFIETH-TKKDGTYVDKKAEEIVDQVQ----ELLQERLSESESETSSVSDGSSDKDEIFLQVVGKDKkGRV 127


                  ....*..
gi 5668785    431 FGYGSIP 437
Cdd:pfam03004 128 YGLGSLQ 134
 
Name Accession Description Interval E-value
Transposase_21 pfam02992
Transposase family tnp2; Transposase_21 proteins are present mostly in plants, with members ...
 295-347 1.24e-19

Transposase family tnp2; Transposase_21 proteins are present mostly in plants, with members horizontally transferred to Bifidobacterium breve (GI: 291457831). Both DUF1258 pfam06869 and Transposase_21 have conserved active site residues similar to RNase H-like proteins, which suggests that they are functional transposases (1).


Pssm-ID: 460775  Cd Length: 211  Bit Score: 87.44  E-value: 1.24e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 5668785    295 DGNISHPSDAEAWKHFNSMYKDFANEHRNVYLGLCTDGFNPFGKSGRKYSLWP 347
Cdd:pfam02992   1 DGLLRHPADSEAWKDFDRKHPEFAEDPRNVRLGLATDGFNPFGSMSSSYSMWP 53
Transpos_assoc pfam13963
Transposase-associated domain;
13-77 3.30e-13

Transposase-associated domain;


Pssm-ID: 433610  Cd Length: 74  Bit Score: 64.65  E-value: 3.30e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5668785     13 TKEFKEGLVDFMRFAANQeiPLECGKMYCPCSTCGNEKFLPVDSIWKHLYSRGFMPGYYIWFSHG 77
Cdd:pfam13963  11 SPEYIEGVNNFLKFAFSR--RPNGDAILCPCKKCRNRKWMDRNEVHEHLICYGFMPGYTVWVYHG 73
Transposase_24 pfam03004
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 352-437 1.05e-07

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 50.90  E-value: 1.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5668785    352 TGELPDMVTFMEATHkRKSDGVFVCKKAELIAKKCRnmehQILSQRDNDDGDTLETSHLTQEEIDAIYQGEVQVNK-GKK 430
Cdd:pfam03004  53 KGRTPTRAEVFIETH-TKKDGTYVDKKAEEIVDQVQ----ELLQERLSESESETSSVSDGSSDKDEIFLQVVGKDKkGRV 127


                  ....*..
gi 5668785    431 FGYGSIP 437
Cdd:pfam03004 128 YGLGSLQ 134
 
Name Accession Description Interval E-value
Transposase_21 pfam02992
Transposase family tnp2; Transposase_21 proteins are present mostly in plants, with members ...
 295-347 1.24e-19

Transposase family tnp2; Transposase_21 proteins are present mostly in plants, with members horizontally transferred to Bifidobacterium breve (GI: 291457831). Both DUF1258 pfam06869 and Transposase_21 have conserved active site residues similar to RNase H-like proteins, which suggests that they are functional transposases (1).


Pssm-ID: 460775  Cd Length: 211  Bit Score: 87.44  E-value: 1.24e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 5668785    295 DGNISHPSDAEAWKHFNSMYKDFANEHRNVYLGLCTDGFNPFGKSGRKYSLWP 347
Cdd:pfam02992   1 DGLLRHPADSEAWKDFDRKHPEFAEDPRNVRLGLATDGFNPFGSMSSSYSMWP 53
Transpos_assoc pfam13963
Transposase-associated domain;
13-77 3.30e-13

Transposase-associated domain;


Pssm-ID: 433610  Cd Length: 74  Bit Score: 64.65  E-value: 3.30e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5668785     13 TKEFKEGLVDFMRFAANQeiPLECGKMYCPCSTCGNEKFLPVDSIWKHLYSRGFMPGYYIWFSHG 77
Cdd:pfam13963  11 SPEYIEGVNNFLKFAFSR--RPNGDAILCPCKKCRNRKWMDRNEVHEHLICYGFMPGYTVWVYHG 73
Transposase_24 pfam03004
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 352-437 1.05e-07

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 50.90  E-value: 1.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5668785    352 TGELPDMVTFMEATHkRKSDGVFVCKKAELIAKKCRnmehQILSQRDNDDGDTLETSHLTQEEIDAIYQGEVQVNK-GKK 430
Cdd:pfam03004  53 KGRTPTRAEVFIETH-TKKDGTYVDKKAEEIVDQVQ----ELLQERLSESESETSSVSDGSSDKDEIFLQVVGKDKkGRV 127


                  ....*..
gi 5668785    431 FGYGSIP 437
Cdd:pfam03004 128 YGLGSLQ 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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