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Conserved domains on  [gi|4874263|gb|AAD31328|]
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T16B5.1, partial [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 10549656)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 32-64 8.02e-04

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


:

Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 34.58  E-value: 8.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 4874263     32 SSDVEALLSLKSSID--PSNSISWR--GTDLCNWQGV 64
Cdd:pfam08263   2 NDDGQALLAFKSSLNdpPGALSSWNssSSDPCSWTGV 38
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 34-105 1.13e-03

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 36.75  E-value: 1.13e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4874263    34 DVEALLSLKSSI-DPSNSIS-WRGT-DLCNWQGVRECMNGRVSKLVLEYLNLTGSLNeKSLNQLDQLRVLSFKAN 105
Cdd:PLN00113  30 ELELLLSFKSSInDPLKYLSnWNSSaDVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNN 103
 
Name Accession Description Interval E-value
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 32-64 8.02e-04

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 34.58  E-value: 8.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 4874263     32 SSDVEALLSLKSSID--PSNSISWR--GTDLCNWQGV 64
Cdd:pfam08263   2 NDDGQALLAFKSSLNdpPGALSSWNssSSDPCSWTGV 38
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 34-105 1.13e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 36.75  E-value: 1.13e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4874263    34 DVEALLSLKSSI-DPSNSIS-WRGT-DLCNWQGVRECMNGRVSKLVLEYLNLTGSLNeKSLNQLDQLRVLSFKAN 105
Cdd:PLN00113  30 ELELLLSFKSSInDPLKYLSnWNSSaDVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNN 103
 
Name Accession Description Interval E-value
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 32-64 8.02e-04

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 34.58  E-value: 8.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 4874263     32 SSDVEALLSLKSSID--PSNSISWR--GTDLCNWQGV 64
Cdd:pfam08263   2 NDDGQALLAFKSSLNdpPGALSSWNssSSDPCSWTGV 38
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 34-105 1.13e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 36.75  E-value: 1.13e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4874263    34 DVEALLSLKSSI-DPSNSIS-WRGT-DLCNWQGVRECMNGRVSKLVLEYLNLTGSLNeKSLNQLDQLRVLSFKAN 105
Cdd:PLN00113  30 ELELLLSFKSSInDPLKYLSnWNSSaDVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNN 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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