Strong similarity to gb|X95759 soluble-starch-synthase precursor (SSIII) from Solanum tuberosum [Arabidopsis thaliana]
Protein Classification
PLN02316 family protein( domain architecture ID 11476621)
PLN02316 family protein
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||||||||||||
| PLN02316 | PLN02316 | synthase/transferase |
1-1025 | 0e+00 | |||||||||||||||
synthase/transferase : Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 1998.59 E-value: 0e+00
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| Name | Accession | Description | Interval | E-value | |||||||||||||||
| PLN02316 | PLN02316 | synthase/transferase |
1-1025 | 0e+00 | |||||||||||||||
synthase/transferase Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 1998.59 E-value: 0e+00
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| GT5_Glycogen_synthase_DULL1-like | cd03791 | Glycogen synthase GlgA and similar proteins; This family is most closely related to the GT5 ... |
578-1022 | 0e+00 | |||||||||||||||
Glycogen synthase GlgA and similar proteins; This family is most closely related to the GT5 family of glycosyltransferases. Glycogen synthase (EC:2.4.1.21) catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. Pssm-ID: 340822 [Multi-domain] Cd Length: 474 Bit Score: 575.28 E-value: 0e+00
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| GlgA | COG0297 | Glycogen synthase [Carbohydrate transport and metabolism]; |
577-1023 | 0e+00 | |||||||||||||||
Glycogen synthase [Carbohydrate transport and metabolism]; Pssm-ID: 440066 [Multi-domain] Cd Length: 476 Bit Score: 540.83 E-value: 0e+00
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| glgA | TIGR02095 | glycogen/starch synthase, ADP-glucose type; This family consists of glycogen (or starch) ... |
577-1023 | 5.19e-164 | |||||||||||||||
glycogen/starch synthase, ADP-glucose type; This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. [Energy metabolism, Biosynthesis and degradation of polysaccharides] Pssm-ID: 273969 [Multi-domain] Cd Length: 473 Bit Score: 490.62 E-value: 5.19e-164
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| Glyco_transf_5 | pfam08323 | Starch synthase catalytic domain; |
579-765 | 7.98e-63 | |||||||||||||||
Starch synthase catalytic domain; Pssm-ID: 400563 [Multi-domain] Cd Length: 239 Bit Score: 212.96 E-value: 7.98e-63
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| CBM_25 | smart01066 | Carbohydrate binding domain; |
136-221 | 2.99e-23 | |||||||||||||||
Carbohydrate binding domain; Pssm-ID: 198134 [Multi-domain] Cd Length: 83 Bit Score: 94.35 E-value: 2.99e-23
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| Name | Accession | Description | Interval | E-value | |||||||||||||||
| PLN02316 | PLN02316 | synthase/transferase |
1-1025 | 0e+00 | |||||||||||||||
synthase/transferase Pssm-ID: 215180 [Multi-domain] Cd Length: 1036 Bit Score: 1998.59 E-value: 0e+00
|
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| GT5_Glycogen_synthase_DULL1-like | cd03791 | Glycogen synthase GlgA and similar proteins; This family is most closely related to the GT5 ... |
578-1022 | 0e+00 | |||||||||||||||
Glycogen synthase GlgA and similar proteins; This family is most closely related to the GT5 family of glycosyltransferases. Glycogen synthase (EC:2.4.1.21) catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. Pssm-ID: 340822 [Multi-domain] Cd Length: 474 Bit Score: 575.28 E-value: 0e+00
|
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| GlgA | COG0297 | Glycogen synthase [Carbohydrate transport and metabolism]; |
577-1023 | 0e+00 | |||||||||||||||
Glycogen synthase [Carbohydrate transport and metabolism]; Pssm-ID: 440066 [Multi-domain] Cd Length: 476 Bit Score: 540.83 E-value: 0e+00
|
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| glgA | PRK00654 | glycogen synthase GlgA; |
577-1025 | 5.54e-180 | |||||||||||||||
glycogen synthase GlgA; Pssm-ID: 234809 [Multi-domain] Cd Length: 466 Bit Score: 531.62 E-value: 5.54e-180
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| glgA | TIGR02095 | glycogen/starch synthase, ADP-glucose type; This family consists of glycogen (or starch) ... |
577-1023 | 5.19e-164 | |||||||||||||||
glycogen/starch synthase, ADP-glucose type; This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. [Energy metabolism, Biosynthesis and degradation of polysaccharides] Pssm-ID: 273969 [Multi-domain] Cd Length: 473 Bit Score: 490.62 E-value: 5.19e-164
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| PLN02939 | PLN02939 | transferase, transferring glycosyl groups |
577-1023 | 9.52e-153 | |||||||||||||||
transferase, transferring glycosyl groups Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 478.63 E-value: 9.52e-153
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| PRK14099 | PRK14099 | glycogen synthase GlgA; |
576-1022 | 5.50e-78 | |||||||||||||||
glycogen synthase GlgA; Pssm-ID: 237610 [Multi-domain] Cd Length: 485 Bit Score: 263.89 E-value: 5.50e-78
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| Glyco_transf_5 | pfam08323 | Starch synthase catalytic domain; |
579-765 | 7.98e-63 | |||||||||||||||
Starch synthase catalytic domain; Pssm-ID: 400563 [Multi-domain] Cd Length: 239 Bit Score: 212.96 E-value: 7.98e-63
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| PRK14098 | PRK14098 | starch synthase; |
579-1020 | 6.57e-56 | |||||||||||||||
starch synthase; Pssm-ID: 172588 [Multi-domain] Cd Length: 489 Bit Score: 201.89 E-value: 6.57e-56
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| CBM_25 | smart01066 | Carbohydrate binding domain; |
136-221 | 2.99e-23 | |||||||||||||||
Carbohydrate binding domain; Pssm-ID: 198134 [Multi-domain] Cd Length: 83 Bit Score: 94.35 E-value: 2.99e-23
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| CBM_25 | smart01066 | Carbohydrate binding domain; |
478-567 | 2.00e-19 | |||||||||||||||
Carbohydrate binding domain; Pssm-ID: 198134 [Multi-domain] Cd Length: 83 Bit Score: 83.56 E-value: 2.00e-19
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| GT4_PimA-like | cd03801 | phosphatidyl-myo-inositol mannosyltransferase; This family is most closely related to the GT4 ... |
697-1021 | 3.06e-18 | |||||||||||||||
phosphatidyl-myo-inositol mannosyltransferase; This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. Pssm-ID: 340831 [Multi-domain] Cd Length: 366 Bit Score: 87.59 E-value: 3.06e-18
|
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| CBM53 | pfam16760 | Starch/carbohydrate-binding module (family 53); |
315-404 | 1.54e-17 | |||||||||||||||
Starch/carbohydrate-binding module (family 53); Pssm-ID: 465261 [Multi-domain] Cd Length: 76 Bit Score: 78.10 E-value: 1.54e-17
|
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| CBM_25 | smart01066 | Carbohydrate binding domain; |
311-407 | 1.81e-17 | |||||||||||||||
Carbohydrate binding domain; Pssm-ID: 198134 [Multi-domain] Cd Length: 83 Bit Score: 78.17 E-value: 1.81e-17
|
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| CBM53 | pfam16760 | Starch/carbohydrate-binding module (family 53); |
141-219 | 3.08e-17 | |||||||||||||||
Starch/carbohydrate-binding module (family 53); Pssm-ID: 465261 [Multi-domain] Cd Length: 76 Bit Score: 76.95 E-value: 3.08e-17
|
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| CBM53 | pfam16760 | Starch/carbohydrate-binding module (family 53); |
482-566 | 1.68e-16 | |||||||||||||||
Starch/carbohydrate-binding module (family 53); Pssm-ID: 465261 [Multi-domain] Cd Length: 76 Bit Score: 75.02 E-value: 1.68e-16
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| GT4_WavL-like | cd03819 | Vibrio cholerae WavL and similar sequences; This family is most closely related to the GT4 ... |
697-947 | 8.62e-14 | |||||||||||||||
Vibrio cholerae WavL and similar sequences; This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. Pssm-ID: 340846 [Multi-domain] Cd Length: 345 Bit Score: 73.93 E-value: 8.62e-14
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| GT4_sucrose_synthase | cd03800 | sucrose-phosphate synthase and similar proteins; This family is most closely related to the ... |
684-1017 | 1.10e-09 | |||||||||||||||
sucrose-phosphate synthase and similar proteins; This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. Pssm-ID: 340830 [Multi-domain] Cd Length: 398 Bit Score: 61.49 E-value: 1.10e-09
|
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| GT4_ExpE7-like | cd03823 | glycosyltransferase ExpE7 and similar proteins; This family is most closely related to the GT4 ... |
697-937 | 1.60e-08 | |||||||||||||||
glycosyltransferase ExpE7 and similar proteins; This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). Pssm-ID: 340850 [Multi-domain] Cd Length: 357 Bit Score: 57.72 E-value: 1.60e-08
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| RfaB | COG0438 | Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ... |
903-1025 | 1.80e-08 | |||||||||||||||
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 440207 [Multi-domain] Cd Length: 123 Bit Score: 53.84 E-value: 1.80e-08
|
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| Glycosyltransferase_GTB-type | cd01635 | glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases ... |
818-949 | 3.59e-07 | |||||||||||||||
glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Pssm-ID: 340816 [Multi-domain] Cd Length: 235 Bit Score: 52.41 E-value: 3.59e-07
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| MAP7 | pfam05672 | MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
233-284 | 1.02e-06 | |||||||||||||||
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 49.27 E-value: 1.02e-06
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| GT4_GT28_WabH-like | cd03811 | family 4 and family 28 glycosyltransferases similar to Klebsiella WabH; This family is most ... |
699-937 | 2.10e-06 | |||||||||||||||
family 4 and family 28 glycosyltransferases similar to Klebsiella WabH; This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. Pssm-ID: 340839 [Multi-domain] Cd Length: 351 Bit Score: 51.20 E-value: 2.10e-06
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| Glyco_trans_1_4 | pfam13692 | Glycosyl transferases group 1; |
830-951 | 2.83e-06 | |||||||||||||||
Glycosyl transferases group 1; Pssm-ID: 463957 [Multi-domain] Cd Length: 138 Bit Score: 47.89 E-value: 2.83e-06
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| GT4_WlbH-like | cd03798 | Bordetella parapertussis WlbH and similar proteins; This family is most closely related to the ... |
683-1023 | 1.27e-05 | |||||||||||||||
Bordetella parapertussis WlbH and similar proteins; This family is most closely related to the GT4 family of glycosyltransferases. Staphylococcus aureus CapJ may be involved in capsule polysaccharide biosynthesis. WlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. Pssm-ID: 340828 [Multi-domain] Cd Length: 376 Bit Score: 48.53 E-value: 1.27e-05
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| Glyco_transf_4 | pfam13439 | Glycosyltransferase Family 4; |
593-788 | 1.50e-05 | |||||||||||||||
Glycosyltransferase Family 4; Pssm-ID: 463877 [Multi-domain] Cd Length: 169 Bit Score: 46.37 E-value: 1.50e-05
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| tolA | PRK09510 | cell envelope integrity inner membrane protein TolA; Provisional |
233-293 | 1.59e-05 | |||||||||||||||
cell envelope integrity inner membrane protein TolA; Provisional Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 48.26 E-value: 1.59e-05
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
234-293 | 2.80e-05 | |||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 47.53 E-value: 2.80e-05
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| TPH | pfam13868 | Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
234-287 | 5.44e-05 | |||||||||||||||
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain. Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 46.45 E-value: 5.44e-05
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| MAP7 | pfam05672 | MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
235-284 | 6.43e-05 | |||||||||||||||
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 44.26 E-value: 6.43e-05
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
235-293 | 6.78e-05 | |||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 46.38 E-value: 6.78e-05
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| ERM_helical | pfam20492 | Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related ... |
234-293 | 6.89e-05 | |||||||||||||||
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related proteins, ezrin, radixin and moesin. Ezrin was first identified as a constituent of microvilli, radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions, and moesin as a heparin binding protein. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain, an extended alpha-helical domain and a charged C-terminal domain (pfam00769). Ezrin, radixin and merlin also contain a polyproline linker region between the helical and C-terminal domains. The N-terminal domain is highly conserved and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily, designated the FERM domain. ERM proteins crosslink actin filaments with plasma membranes. They co-localize with CD44 at actin filament plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains. This is the alpha-helical domain, which is involved in intramolecular masking of protein-protein interaction sites, regulating the activity of this proteins. Pssm-ID: 466641 [Multi-domain] Cd Length: 120 Bit Score: 43.37 E-value: 6.89e-05
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| GT4_MtfB-like | cd03809 | glycosyltransferases MtfB, WbpX, and similar proteins; This family is most closely related to ... |
686-937 | 7.60e-05 | |||||||||||||||
glycosyltransferases MtfB, WbpX, and similar proteins; This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. Pssm-ID: 340838 [Multi-domain] Cd Length: 362 Bit Score: 46.20 E-value: 7.60e-05
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| MRP-L20 | pfam12824 | Mitochondrial ribosomal protein subunit L20; This family is the essential mitochondrial ... |
237-286 | 8.31e-05 | |||||||||||||||
Mitochondrial ribosomal protein subunit L20; This family is the essential mitochondrial ribosomal protein subunit L20 of fungi. Pssm-ID: 432810 Cd Length: 161 Bit Score: 44.25 E-value: 8.31e-05
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| ERM_helical | pfam20492 | Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related ... |
233-284 | 8.68e-05 | |||||||||||||||
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related proteins, ezrin, radixin and moesin. Ezrin was first identified as a constituent of microvilli, radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions, and moesin as a heparin binding protein. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain, an extended alpha-helical domain and a charged C-terminal domain (pfam00769). Ezrin, radixin and merlin also contain a polyproline linker region between the helical and C-terminal domains. The N-terminal domain is highly conserved and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily, designated the FERM domain. ERM proteins crosslink actin filaments with plasma membranes. They co-localize with CD44 at actin filament plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains. This is the alpha-helical domain, which is involved in intramolecular masking of protein-protein interaction sites, regulating the activity of this proteins. Pssm-ID: 466641 [Multi-domain] Cd Length: 120 Bit Score: 42.98 E-value: 8.68e-05
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| Casc1_N | pfam15927 | Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally ... |
235-292 | 1.00e-04 | |||||||||||||||
Cancer susceptibility candidate 1 N-terminus; This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 200 amino acids in length. The family is found in association with pfam12366. There are two completely conserved residues (N and W) that may be functionally important. Pssm-ID: 464947 [Multi-domain] Cd Length: 201 Bit Score: 44.66 E-value: 1.00e-04
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| TolA | COG3064 | Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
235-298 | 1.03e-04 | |||||||||||||||
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 46.19 E-value: 1.03e-04
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
239-293 | 1.60e-04 | |||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 45.22 E-value: 1.60e-04
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
235-298 | 1.67e-04 | |||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 45.22 E-value: 1.67e-04
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| TPH | pfam13868 | Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
230-293 | 2.13e-04 | |||||||||||||||
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain. Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 44.52 E-value: 2.13e-04
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| Glycos_transf_1 | pfam00534 | Glycosyl transferases group 1; Mutations in this domain of Swiss:P37287 lead to disease ... |
828-947 | 2.50e-04 | |||||||||||||||
Glycosyl transferases group 1; Mutations in this domain of Swiss:P37287 lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. Pssm-ID: 425737 [Multi-domain] Cd Length: 158 Bit Score: 42.65 E-value: 2.50e-04
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| MAP7 | pfam05672 | MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
235-298 | 3.06e-04 | |||||||||||||||
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 42.34 E-value: 3.06e-04
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| YqiK | COG2268 | Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
236-287 | 3.15e-04 | |||||||||||||||
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 44.48 E-value: 3.15e-04
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| TolA | COG3064 | Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
235-298 | 3.44e-04 | |||||||||||||||
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 44.26 E-value: 3.44e-04
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| TolA | COG3064 | Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
234-299 | 5.66e-04 | |||||||||||||||
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 43.87 E-value: 5.66e-04
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| MAP7 | pfam05672 | MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
234-288 | 8.21e-04 | |||||||||||||||
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 41.18 E-value: 8.21e-04
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| Nop53 | pfam07767 | Nop53 (60S ribosomal biogenesis); This nucleolar family of proteins are involved in 60S ... |
235-299 | 8.50e-04 | |||||||||||||||
Nop53 (60S ribosomal biogenesis); This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Pssm-ID: 462259 [Multi-domain] Cd Length: 353 Bit Score: 42.67 E-value: 8.50e-04
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| TPH | pfam13868 | Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
235-293 | 1.46e-03 | |||||||||||||||
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain. Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 42.21 E-value: 1.46e-03
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| PRK03963 | PRK03963 | V-type ATP synthase subunit E; Provisional |
233-287 | 1.53e-03 | |||||||||||||||
V-type ATP synthase subunit E; Provisional Pssm-ID: 167649 [Multi-domain] Cd Length: 198 Bit Score: 40.89 E-value: 1.53e-03
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| Cgr1 | pfam03879 | Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ... |
233-292 | 1.54e-03 | |||||||||||||||
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing. Pssm-ID: 427562 [Multi-domain] Cd Length: 107 Bit Score: 39.14 E-value: 1.54e-03
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
236-293 | 1.75e-03 | |||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 41.75 E-value: 1.75e-03
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| AhaH | TIGR02926 | ATP synthase archaeal, H subunit; he A1/A0 ATP synthase is homologous to the V-type (V1/V0, ... |
239-284 | 2.17e-03 | |||||||||||||||
ATP synthase archaeal, H subunit; he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes. Pssm-ID: 131972 [Multi-domain] Cd Length: 85 Bit Score: 38.29 E-value: 2.17e-03
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| PRK14474 | PRK14474 | F0F1 ATP synthase subunit B; Provisional |
233-301 | 2.25e-03 | |||||||||||||||
F0F1 ATP synthase subunit B; Provisional Pssm-ID: 184696 [Multi-domain] Cd Length: 250 Bit Score: 40.96 E-value: 2.25e-03
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| Borrelia_P83 | pfam05262 | Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
227-289 | 2.37e-03 | |||||||||||||||
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 41.53 E-value: 2.37e-03
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
235-293 | 2.37e-03 | |||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 41.37 E-value: 2.37e-03
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| TPH | pfam13868 | Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
224-287 | 2.83e-03 | |||||||||||||||
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain. Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 41.06 E-value: 2.83e-03
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| NtpH | COG2811 | Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]; Archaeal ... |
235-294 | 2.84e-03 | |||||||||||||||
Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase subunit H is part of the Pathway/BioSystem: A/V-type ATP synthase Pssm-ID: 442060 [Multi-domain] Cd Length: 108 Bit Score: 38.36 E-value: 2.84e-03
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| GT4_WcaC-like | cd03825 | putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins; This family ... |
753-1022 | 3.13e-03 | |||||||||||||||
putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins; This family is most closely related to the GT4 family of glycosyltransferases. Escherichia coli WcaC has been predicted to function in colanic acid biosynthesis. WcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. Pssm-ID: 340851 [Multi-domain] Cd Length: 364 Bit Score: 41.16 E-value: 3.13e-03
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| DR0291 | COG1579 | Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
233-294 | 3.22e-03 | |||||||||||||||
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only]; Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.22e-03
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| PRK05035 | PRK05035 | electron transport complex protein RnfC; Provisional |
235-294 | 3.44e-03 | |||||||||||||||
electron transport complex protein RnfC; Provisional Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 41.47 E-value: 3.44e-03
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| SPFH_prohibitin | cd03401 | Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model ... |
225-277 | 3.61e-03 | |||||||||||||||
Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology. Pssm-ID: 259799 [Multi-domain] Cd Length: 195 Bit Score: 39.80 E-value: 3.61e-03
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| PRK03963 | PRK03963 | V-type ATP synthase subunit E; Provisional |
232-297 | 4.14e-03 | |||||||||||||||
V-type ATP synthase subunit E; Provisional Pssm-ID: 167649 [Multi-domain] Cd Length: 198 Bit Score: 39.74 E-value: 4.14e-03
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| V-ATPase_G | pfam03179 | Vacuolar (H+)-ATPase G subunit; This family represents the eukaryotic vacuolar (H+)-ATPase ... |
239-295 | 4.27e-03 | |||||||||||||||
Vacuolar (H+)-ATPase G subunit; This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialized cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation. Pssm-ID: 460836 [Multi-domain] Cd Length: 105 Bit Score: 37.97 E-value: 4.27e-03
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| TolA | COG3064 | Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
241-299 | 5.84e-03 | |||||||||||||||
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 40.41 E-value: 5.84e-03
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| TolA | COG3064 | Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; |
233-298 | 6.15e-03 | |||||||||||||||
Membrane protein TolA involved in colicin uptake [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442298 [Multi-domain] Cd Length: 485 Bit Score: 40.41 E-value: 6.15e-03
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| CAF-1_p150 | pfam11600 | Chromatin assembly factor 1 complex p150 subunit, N-terminal; CAF-1_p150 is a polypeptide ... |
234-282 | 6.17e-03 | |||||||||||||||
Chromatin assembly factor 1 complex p150 subunit, N-terminal; CAF-1_p150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesized and acetylated histones H3/H4 into chromatin during DNA replication and repair. CAF-1_p150 includes the HP1 interaction site, the PEST, KER and ED interacting sites. CAF-1_p150 interacts directly with newly synthesized and acetylated histones through the acidic KER and ED domains. The PEST domain is associated with proteins that undergo rapid proteolysis. Pssm-ID: 402959 [Multi-domain] Cd Length: 164 Bit Score: 38.52 E-value: 6.17e-03
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| Smc | COG1196 | Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
237-287 | 6.36e-03 | |||||||||||||||
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 6.36e-03
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| PRK00409 | PRK00409 | recombination and DNA strand exchange inhibitor protein; Reviewed |
223-293 | 6.82e-03 | |||||||||||||||
recombination and DNA strand exchange inhibitor protein; Reviewed Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 6.82e-03
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| PRK07352 | PRK07352 | F0F1 ATP synthase subunit B; Validated |
235-293 | 6.93e-03 | |||||||||||||||
F0F1 ATP synthase subunit B; Validated Pssm-ID: 180941 [Multi-domain] Cd Length: 174 Bit Score: 38.78 E-value: 6.93e-03
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| ATP-synt_Fo_b | cd06503 | F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ... |
235-282 | 7.50e-03 | |||||||||||||||
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens. Pssm-ID: 349951 [Multi-domain] Cd Length: 132 Bit Score: 37.80 E-value: 7.50e-03
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| COG4372 | COG4372 | Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
234-292 | 8.59e-03 | |||||||||||||||
Uncharacterized protein, contains DUF3084 domain [Function unknown]; Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.50 E-value: 8.59e-03
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| MAP7 | pfam05672 | MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
235-287 | 8.74e-03 | |||||||||||||||
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 38.10 E-value: 8.74e-03
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| TPH | pfam13868 | Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
234-287 | 9.26e-03 | |||||||||||||||
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain. Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 39.52 E-value: 9.26e-03
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| SMC_prok_A | TIGR02169 | chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
219-300 | 9.27e-03 | |||||||||||||||
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 9.27e-03
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