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Conserved domains on  [gi|3242716|gb|AAC23768|]
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hypothetical protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-4CXXC_R1 super family cl20401
Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor ...
 154-256 3.82e-18

Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type.


The actual alignment was detected with superfamily member pfam10497:

Pssm-ID: 463117  Cd Length: 99  Bit Score: 79.61  E-value: 3.82e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3242716    154 YDPFNGKTCHQCRQKTMGHRTQC--SECNLVQGQFCdmvNMCLKlLRIQTgfvplVAGSAIA-------VCAGII----- 219
Cdd:pfam10497   1 YDSVNGKTCHQCRQKTLDTKTSCrnSQCKGVRGQFC---GDCLR-NRYGE-----NVEEALAnpdwicpKCRGICncsfc 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 3242716    220 --KDGF----QLARftegaedfflsldcfQIAALGYKSVAHYL 256
Cdd:pfam10497  72 rkKKGLaptgILYH---------------KAKALGFSSVAHYL 99
 
Name Accession Description Interval E-value
zf-4CXXC_R1 pfam10497
Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor ...
 154-256 3.82e-18

Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type.


Pssm-ID: 463117  Cd Length: 99  Bit Score: 79.61  E-value: 3.82e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3242716    154 YDPFNGKTCHQCRQKTMGHRTQC--SECNLVQGQFCdmvNMCLKlLRIQTgfvplVAGSAIA-------VCAGII----- 219
Cdd:pfam10497   1 YDSVNGKTCHQCRQKTLDTKTSCrnSQCKGVRGQFC---GDCLR-NRYGE-----NVEEALAnpdwicpKCRGICncsfc 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 3242716    220 --KDGF----QLARftegaedfflsldcfQIAALGYKSVAHYL 256
Cdd:pfam10497  72 rkKKGLaptgILYH---------------KAKALGFSSVAHYL 99
 
Name Accession Description Interval E-value
zf-4CXXC_R1 pfam10497
Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor ...
 154-256 3.82e-18

Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type.


Pssm-ID: 463117  Cd Length: 99  Bit Score: 79.61  E-value: 3.82e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3242716    154 YDPFNGKTCHQCRQKTMGHRTQC--SECNLVQGQFCdmvNMCLKlLRIQTgfvplVAGSAIA-------VCAGII----- 219
Cdd:pfam10497   1 YDSVNGKTCHQCRQKTLDTKTSCrnSQCKGVRGQFC---GDCLR-NRYGE-----NVEEALAnpdwicpKCRGICncsfc 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 3242716    220 --KDGF----QLARftegaedfflsldcfQIAALGYKSVAHYL 256
Cdd:pfam10497  72 rkKKGLaptgILYH---------------KAKALGFSSVAHYL 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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