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Conserved domains on  [gi|2880041|gb|AAC02735|]
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unknown protein [Arabidopsis thaliana]

Protein Classification

DEAD/DEAH box helicase family protein( domain architecture ID 1000205)

DEAD/DEAH box helicase family protein such as a DEAD/DEAH box-containing ATP-dependent helicase, which catalyzes the unwinding of DNA or RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DEAD-like_helicase_N super family cl28899
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ...
 236-347 6.79e-03

N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.


The actual alignment was detected with superfamily member pfam06414:

Pssm-ID: 475120  Cd Length: 192  Bit Score: 38.11  E-value: 6.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2880041    236 GAGKSTVLKDILKEpFWAGADAVVIEADAFKESDVIYRALSArghVDMIKTAEFVHQSSTDAASSLLVTALNEGRDVIMD 315
Cdd:pfam06414  21 GAGKTELARALLDE-LGRQGNVVRIDPDDFRELHPHYRELQA---ADPKTASEYTQPDASRWVEKLLQHAIENGYNIILE 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2880041    316 GTLSWVPFVVQTITMARNvhrhryrmgAGYKV 347
Cdd:pfam06414  97 GTLRSPDVAKKIARALKA---------AGYRV 119
 
Name Accession Description Interval E-value
Zeta_toxin pfam06414
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ...
 236-347 6.79e-03

Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.


Pssm-ID: 428926  Cd Length: 192  Bit Score: 38.11  E-value: 6.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2880041    236 GAGKSTVLKDILKEpFWAGADAVVIEADAFKESDVIYRALSArghVDMIKTAEFVHQSSTDAASSLLVTALNEGRDVIMD 315
Cdd:pfam06414  21 GAGKTELARALLDE-LGRQGNVVRIDPDDFRELHPHYRELQA---ADPKTASEYTQPDASRWVEKLLQHAIENGYNIILE 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2880041    316 GTLSWVPFVVQTITMARNvhrhryrmgAGYKV 347
Cdd:pfam06414  97 GTLRSPDVAKKIARALKA---------AGYRV 119
 
Name Accession Description Interval E-value
Zeta_toxin pfam06414
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ...
 236-347 6.79e-03

Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.


Pssm-ID: 428926  Cd Length: 192  Bit Score: 38.11  E-value: 6.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2880041    236 GAGKSTVLKDILKEpFWAGADAVVIEADAFKESDVIYRALSArghVDMIKTAEFVHQSSTDAASSLLVTALNEGRDVIMD 315
Cdd:pfam06414  21 GAGKTELARALLDE-LGRQGNVVRIDPDDFRELHPHYRELQA---ADPKTASEYTQPDASRWVEKLLQHAIENGYNIILE 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2880041    316 GTLSWVPFVVQTITMARNvhrhryrmgAGYKV 347
Cdd:pfam06414  97 GTLRSPDVAKKIARALKA---------AGYRV 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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