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Conserved domains on  [gi|9256741|gb|AAB05913|]
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high affinity calcium antiporter CAX1 [Arabidopsis thaliana]

Protein Classification

calcium/proton exchanger( domain architecture ID 11489788)

calcium/proton exchanger translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase

Gene Ontology:  GO:0015369|GO:0006816|GO:0008324

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
33-395 3.12e-163

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


:

Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 463.47  E-value: 3.12e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741     33 VILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILA 112
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    113 LTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAV 192
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    193 LsDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQED-EYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVV 271
Cdd:TIGR00846 161 Q-DMILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDsEVDDEVHEKPTVLSPWSAAAWLVGTTIAIILLADYLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    272 ATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTITVAWILGINMDLNF 351
Cdd:TIGR00846 240 DTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLNF 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 9256741    352 GPLETGCLVVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFF 395
Cdd:TIGR00846 320 GTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
 
Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
33-395 3.12e-163

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 463.47  E-value: 3.12e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741     33 VILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILA 112
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    113 LTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAV 192
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    193 LsDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQED-EYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVV 271
Cdd:TIGR00846 161 Q-DMILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDsEVDDEVHEKPTVLSPWSAAAWLVGTTIAIILLADYLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    272 ATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTITVAWILGINMDLNF 351
Cdd:TIGR00846 240 DTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLNF 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 9256741    352 GPLETGCLVVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFF 395
Cdd:TIGR00846 320 GTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
ChaA COG0387
Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];
39-396 9.28e-77

Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];


Pssm-ID: 440156 [Multi-domain]  Cd Length: 362  Bit Score: 242.76  E-value: 9.28e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741   39 LAILFP-AIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALT--N 115
Cdd:COG0387  11 LLLFVPiAALALFLLHGGRWGPVLVFILAALAIIPLAFAAVHHAEVLAHRLGEPFGGLLLATFGNAIEVILIISAMLagE 90
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  116 NKVAVVKYSLLGSILSNLLLVLGTSLFCGGIanIRREQRFDRKQADVNFFLLLLGFLCH-LLPLLVGYLKNGEASAAVLs 194
Cdd:COG0387  91 ELPTLVRDTIFGAIMINLNGVLGLSLLLGGL--RHKEQEFNLQGARAYLSVLIPLAVLAlVLPNFTTSTPGPTFSTAQL- 167
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  195 dmqlsisRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVVATI 274
Cdd:COG0387 168 -------IFVAIVLLVLYGLFLLFQTVTHRDYFLPEDEGEEDEDEHEEPPSKWSLLLSLGLLLVALVAVVLLSEILVGSI 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  275 EEASDKWNLSVSFISIILlPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTITVAWILGINMDLNFGPL 354
Cdd:COG0387 241 EEAVEALGLPEAFVGVII-AILVLAPEGLTAVRAARKNRLQLSLNIALGSALASIGLTIPALVLISLLTGQPLTLGFNPF 319
                       330       340       350       360
                ....*....|....*....|....*....|....*....|..
gi 9256741  355 ETGCLVVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFFV 396
Cdd:COG0387 320 ELVLLALTVLVSNLTFSDGRTNWLEGAVHLALFAIYAFLFFF 361
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
251-396 2.18e-12

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 64.55  E-value: 2.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    251 SGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGL 330
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 9256741    331 FVVPLTITVAWIL--GINMDLNFGPLETGCLVVSIIITAFTLQD-GSSHYMKGLVLLLCYFIIAICFFV 396
Cdd:pfam01699  81 LVLGLSALIGPVKvdSLLLKLDLGVLLLVALLLLLLLLLLLLPLfGRLSRFEGLVLLLLYIVYLVFQIV 149
 
Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
33-395 3.12e-163

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 463.47  E-value: 3.12e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741     33 VILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILA 112
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    113 LTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAV 192
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    193 LsDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQED-EYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVV 271
Cdd:TIGR00846 161 Q-DMILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDsEVDDEVHEKPTVLSPWSAAAWLVGTTIAIILLADYLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    272 ATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTITVAWILGINMDLNF 351
Cdd:TIGR00846 240 DTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLNF 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 9256741    352 GPLETGCLVVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFF 395
Cdd:TIGR00846 320 GTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
ChaA COG0387
Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];
39-396 9.28e-77

Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];


Pssm-ID: 440156 [Multi-domain]  Cd Length: 362  Bit Score: 242.76  E-value: 9.28e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741   39 LAILFP-AIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALT--N 115
Cdd:COG0387  11 LLLFVPiAALALFLLHGGRWGPVLVFILAALAIIPLAFAAVHHAEVLAHRLGEPFGGLLLATFGNAIEVILIISAMLagE 90
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  116 NKVAVVKYSLLGSILSNLLLVLGTSLFCGGIanIRREQRFDRKQADVNFFLLLLGFLCH-LLPLLVGYLKNGEASAAVLs 194
Cdd:COG0387  91 ELPTLVRDTIFGAIMINLNGVLGLSLLLGGL--RHKEQEFNLQGARAYLSVLIPLAVLAlVLPNFTTSTPGPTFSTAQL- 167
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  195 dmqlsisRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVVATI 274
Cdd:COG0387 168 -------IFVAIVLLVLYGLFLLFQTVTHRDYFLPEDEGEEDEDEHEEPPSKWSLLLSLGLLLVALVAVVLLSEILVGSI 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  275 EEASDKWNLSVSFISIILlPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTITVAWILGINMDLNFGPL 354
Cdd:COG0387 241 EEAVEALGLPEAFVGVII-AILVLAPEGLTAVRAARKNRLQLSLNIALGSALASIGLTIPALVLISLLTGQPLTLGFNPF 319
                       330       340       350       360
                ....*....|....*....|....*....|....*....|..
gi 9256741  355 ETGCLVVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFFV 396
Cdd:COG0387 320 ELVLLALTVLVSNLTFSDGRTNWLEGAVHLALFAIYAFLFFF 361
cax TIGR00378
calcium/proton exchanger (cax); [Transport and binding proteins, Cations and iron carrying ...
42-395 2.99e-76

calcium/proton exchanger (cax); [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273043 [Multi-domain]  Cd Length: 349  Bit Score: 240.92  E-value: 2.99e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741     42 LFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVV 121
Cdd:TIGR00378   1 LLVFVPLSVIGSLMHWPSTVLFAVYCLAIIPLAAYMGRATEELAIIAGPRIGGLLNATFGNAVELIISIIALKEGLTGIV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    122 KYSLLGSILSNLLLVLGTSLFCGGIAniRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSdmqlsIS 201
Cdd:TIGR00378  81 LASLTGSVLGNLLLVAGLSFFVGGLK--YKRQEFNIHAARHNSSLLIFAIVAFLIPAAFEVFSVGMENASKLN-----LS 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    202 RGFSIVMLISYIAYLVFQLWTHRQLFDAQEQE-DEYDDDVEQET-AVISFWSGFAWLVGMTLVIALLSEYVVATIEEASD 279
Cdd:TIGR00378 154 IGISIVMILVYVLALYFKLGTHRGLYQPNNAEqTEEMEEIEREPeHSWSGKVATIVLLAATIVVAYISENLVGTFHSVAE 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    280 KWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTITVAWILGINMDLNFGPLETGCL 359
Cdd:TIGR00378 234 SFGLSELFIGVIVVPIVGNAAEHATAVIVAMKDKMDLAVEVAVGSSLQIAMFVAPVLVIVGWFIPTPMPLNFTLFELVAM 313
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 9256741    360 VVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFF 395
Cdd:TIGR00378 314 VSAVLLMNAISNDGDSNWLEGATLLAAYVIMAIAFF 349
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
74-389 2.38e-16

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 79.02  E-value: 2.38e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741   74 AERVSFLTEQLAFYTG--PTLGGLLNATCGNAT-ELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIA--- 147
Cdd:COG0530   1 ADLLVRGADALARRLGisPLVIGLTIVAFGTSLpELAVSVTAALDGSPDIAVGNVVGSNIANILLILGLAALIRPLAvdr 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  148 -NIRREqrfdrkqadvnffllllgflchlLPLLVGYlkngeASAAVLSDMQLSISRGFSIVMLISYIAYLVFQLWTHRQL 226
Cdd:COG0530  81 rVLRRD-----------------------LPFLLLA-----SLLLLALLLDGTLSRIDGVILLLLYVLYLYYLIRRARKE 132
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  227 FDAQEQEDEYDDDVEqetavISFWSGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAV 306
Cdd:COG0530 133 PAWEEVEEELEEKPK-----MSLWKALLLLVLGLALLVVGARLLVDGAVEIARALGVSELVIGLTIVAIGTSLPELATSI 207
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741  307 IFAFKNKLDISLGVALGSATQIGLFVVPLTITVAwilGINMDLNFGPLE-TGCLVVSIIITAFTLQDGSSHYMKGLVLLL 385
Cdd:COG0530 208 VAARKGEDDLAVGNIIGSNIFNILLVLGIGALIT---PIPVDPAVLSFDlPVMLAATLLLLGLLRTGGRIGRWEGLLLLA 284

                ....
gi 9256741  386 CYFI 389
Cdd:COG0530 285 LYLA 288
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
251-396 2.18e-12

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 64.55  E-value: 2.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    251 SGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGL 330
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 9256741    331 FVVPLTITVAWIL--GINMDLNFGPLETGCLVVSIIITAFTLQD-GSSHYMKGLVLLLCYFIIAICFFV 396
Cdd:pfam01699  81 LVLGLSALIGPVKvdSLLLKLDLGVLLLVALLLLLLLLLLLLPLfGRLSRFEGLVLLLLYIVYLVFQIV 149
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
60-221 9.60e-10

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 56.84  E-value: 9.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741     60 PWIFGLSLLGLTPLAERVSFLTEQLAFYTG---PTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLV 136
Cdd:pfam01699   3 LLLFILGLLLISVAADLLVDSAEVLARVLGisgTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNILLV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9256741    137 LGTSLFCGGIANIRREQRFDrkqadvnFFLLLLGFLCHLLPLLVGYLKNgeasaavlsdmQLSISRGFSIVMLISYIAYL 216
Cdd:pfam01699  83 LGLSALIGPVKVDSLLLKLD-------LGVLLLVALLLLLLLLLLLLPL-----------FGRLSRFEGLVLLLLYIVYL 144

                  ....*
gi 9256741    217 VFQLW 221
Cdd:pfam01699 145 VFQIV 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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