NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
The query sequence AAA68255.1 may be preliminary or obsolete. For more information, check Entrez.
Conserved domains on  [gi|860691|gb|AAA68255.1|]
View 

Hypothetical protein F26A1.13 [Caenorhabditis elegans]

Protein Classification

SMR domain-containing protein( domain architecture ID 10648789)

SMR domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
SMR smart00463
Small MutS-related domain;
370-451 2.29e-16

Small MutS-related domain;


:

Pssm-ID: 214676 [Multi-domain]  Cd Length: 80  Bit Score: 73.49  E-value: 2.29e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 860691      370 PWFLDLHYMSVDGAVKLVKEAIEAVKYHlkaarNLDRRITVVTGSGNNSKCG-AKIKPQVLAMLQHNDYNY-ELVNDGCI 447
Cdd:smart00463   1 KWSLDLHGLTVEEALTALDKFLNNARLK-----GLEQKLVIITGKGKHSLGGkSGVKPALKEHLRVESFRFaEEGNSGVL 75

                   ....
gi 860691      448 RFKV 451
Cdd:smart00463  76 VVKL 79
 
Name Accession Description Interval E-value
SMR smart00463
Small MutS-related domain;
370-451 2.29e-16

Small MutS-related domain;


Pssm-ID: 214676 [Multi-domain]  Cd Length: 80  Bit Score: 73.49  E-value: 2.29e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 860691      370 PWFLDLHYMSVDGAVKLVKEAIEAVKYHlkaarNLDRRITVVTGSGNNSKCG-AKIKPQVLAMLQHNDYNY-ELVNDGCI 447
Cdd:smart00463   1 KWSLDLHGLTVEEALTALDKFLNNARLK-----GLEQKLVIITGKGKHSLGGkSGVKPALKEHLRVESFRFaEEGNSGVL 75

                   ....
gi 860691      448 RFKV 451
Cdd:smart00463  76 VVKL 79
 
Name Accession Description Interval E-value
SMR smart00463
Small MutS-related domain;
370-451 2.29e-16

Small MutS-related domain;


Pssm-ID: 214676 [Multi-domain]  Cd Length: 80  Bit Score: 73.49  E-value: 2.29e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 860691      370 PWFLDLHYMSVDGAVKLVKEAIEAVKYHlkaarNLDRRITVVTGSGNNSKCG-AKIKPQVLAMLQHNDYNY-ELVNDGCI 447
Cdd:smart00463   1 KWSLDLHGLTVEEALTALDKFLNNARLK-----GLEQKLVIITGKGKHSLGGkSGVKPALKEHLRVESFRFaEEGNSGVL 75

                   ....
gi 860691      448 RFKV 451
Cdd:smart00463  76 VVKL 79
 
Blast search parameters
Data Source: Live blast search RID = P7WEBWED013
User Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01   Maximum number of hits: 500

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH
HHS Vulnerability Disclosure