|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-428 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 698.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 2 VLAELGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFS 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 82 ELCKMLDPGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 162 SYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA 241
Cdd:TIGR01425 161 SYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 242 VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLE 321
Cdd:TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 322 KLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSGpKVF--NES 399
Cdd:TIGR01425 321 HLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA-KTMlkDPS 399
|
410 420
....*....|....*....|....*....
gi 515681 400 RMMRIARGSGRQVREVMEMLEEYKRLAKI 428
Cdd:TIGR01425 400 RIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-451 |
3.01e-169 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 484.33 E-value: 3.01e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 6 LGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 86 MLDpGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 166 SDPVKIAVEGVDTFKKEncDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAV 245
Cdd:PRK00771 160 KDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 246 IITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQ 325
Cdd:PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 326 GNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEmMPKGHEKESQAKIKRYMTMMDSMTNDELDSsgPKVFNESRMMRIA 405
Cdd:PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELEN--PEIINASRIRRIA 394
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 515681 406 RGSGRQVREVMEMLEEYKRLAKIWSKMKGlkipKNGDMSALSRNMN 451
Cdd:PRK00771 395 RGSGTTVEDVRELLKYYKMMKKAMKQLKK----GKGKMGKLMKQFG 436
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-427 |
1.36e-142 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 415.96 E-value: 1.36e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 6 LGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIK-KIVN---LEDLAAGHNKRRIIEQaifs 81
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKeRALGeevLKSLTPGQQVIKIVHD---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 82 ELCKMLDPGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 162 SYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA 241
Cdd:COG0541 161 EEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 242 VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLE 321
Cdd:COG0541 241 LTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLAK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 322 KLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAeMMPKGHEKESQAKIKRYMTMMDSMTNDELDSsgPKVFNESRM 401
Cdd:COG0541 321 KLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGK-LKQLKDLDIDEKELKRIEAIINSMTPEERRN--PDIINGSRK 397
|
410 420
....*....|....*....|....*.
gi 515681 402 MRIARGSGRQVREVMEMLEEYKRLAK 427
Cdd:COG0541 398 RRIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
1.05e-138 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 397.33 E-value: 1.05e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 515681 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
6.82e-108 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 318.72 E-value: 6.82e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 515681 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
103-296 |
2.37e-91 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 276.60 E-value: 2.37e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYAYYHQKKG-YKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:smart00962 3 VILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:smart00962 83 RGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAALS 162
|
170 180 190
....*....|....*....|....*....|....*
gi 515681 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:smart00962 163 IAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-428 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 698.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 2 VLAELGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFS 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 82 ELCKMLDPGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 162 SYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA 241
Cdd:TIGR01425 161 SYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 242 VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLE 321
Cdd:TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 322 KLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSGpKVF--NES 399
Cdd:TIGR01425 321 HLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA-KTMlkDPS 399
|
410 420
....*....|....*....|....*....
gi 515681 400 RMMRIARGSGRQVREVMEMLEEYKRLAKI 428
Cdd:TIGR01425 400 RIRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-451 |
3.01e-169 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 484.33 E-value: 3.01e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 6 LGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 86 MLDpGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 166 SDPVKIAVEGVDTFKKEncDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAV 245
Cdd:PRK00771 160 KDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 246 IITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQ 325
Cdd:PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 326 GNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEmMPKGHEKESQAKIKRYMTMMDSMTNDELDSsgPKVFNESRMMRIA 405
Cdd:PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELEN--PEIINASRIRRIA 394
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 515681 406 RGSGRQVREVMEMLEEYKRLAKIWSKMKGlkipKNGDMSALSRNMN 451
Cdd:PRK00771 395 RGSGTTVEDVRELLKYYKMMKKAMKQLKK----GKGKMGKLMKQFG 436
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-427 |
1.36e-142 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 415.96 E-value: 1.36e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 6 LGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIK-KIVN---LEDLAAGHNKRRIIEQaifs 81
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKeRALGeevLKSLTPGQQVIKIVHD---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 82 ELCKMLDPGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 162 SYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA 241
Cdd:COG0541 161 EEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 242 VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLE 321
Cdd:COG0541 241 LTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLAK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 322 KLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAeMMPKGHEKESQAKIKRYMTMMDSMTNDELDSsgPKVFNESRM 401
Cdd:COG0541 321 KLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGK-LKQLKDLDIDEKELKRIEAIINSMTPEERRN--PDIINGSRK 397
|
410 420
....*....|....*....|....*.
gi 515681 402 MRIARGSGRQVREVMEMLEEYKRLAK 427
Cdd:COG0541 398 RRIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
1.05e-138 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 397.33 E-value: 1.05e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 515681 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
6-434 |
1.29e-109 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 331.95 E-value: 1.29e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 6 LGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCK 85
Cdd:TIGR00959 4 LSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 86 MLDPGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKK-GYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT 164
Cdd:TIGR00959 84 ILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKqGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 165 ESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGA 244
Cdd:TIGR00959 164 GQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 245 VIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLS 324
Cdd:TIGR00959 244 VVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 325 QGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSsgPKVFNESRMMRI 404
Cdd:TIGR00959 324 KGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRN--PKILNPSRRKRI 401
|
410 420 430
....*....|....*....|....*....|
gi 515681 405 ARGSGRQVREVMEMLEEYKRLAKiwsKMKG 434
Cdd:TIGR00959 402 AAGSGTTVQDVNKLIKRFEQMKK---MMKK 428
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
6.82e-108 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 318.72 E-value: 6.82e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 515681 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
103-296 |
2.37e-91 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 276.60 E-value: 2.37e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYAYYHQKKG-YKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:smart00962 3 VILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:smart00962 83 RGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAALS 162
|
170 180 190
....*....|....*....|....*....|....*
gi 515681 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:smart00962 163 IAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
103-294 |
1.32e-88 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 269.24 E-value: 1.32e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKE 182
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 183 NCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSA 262
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 515681 263 VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd03115 162 VAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
6-296 |
2.10e-67 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 218.74 E-value: 2.10e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 6 LGGGITRAIqqmSNVTIIDEKALNEcLNEItraLLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNkrriIEQAIFSELCK 85
Cdd:COG0552 16 LGEKLKSLF---SGKKKIDEDLLEE-LEEL---LIEADVGVETTEEIIEELRERVKRKKLKDPEE----LKEALKEELLE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 86 MLDPGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165
Cdd:COG0552 85 ILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQKEG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 166 SDPVKIAVEGVDTFKKENCDLIIVDTSGR-HKQeASLFEE---MRQVAE---ATKPDLVIFVMDSSIGQAAFDQAQAFKQ 238
Cdd:COG0552 165 ADPAAVAFDAIQAAKARGADVVIIDTAGRlHNK-KNLMEElkkIKRVIKkldPDAPHEVLLVLDATTGQNALSQAKVFNE 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 515681 239 SVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:COG0552 244 AVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
19-296 |
6.80e-67 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 218.30 E-value: 6.80e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 19 NVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCKMLDPGKPAFAPKK 98
Cdd:PRK14974 54 KITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 99 RKAS----VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVE 174
Cdd:PRK14974 134 IKSKgkpvVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 175 GVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHA 254
Cdd:PRK14974 214 AIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADA 293
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 515681 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:PRK14974 294 KGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-294 |
2.32e-62 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 201.67 E-value: 2.32e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 515681 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
26-295 |
4.74e-62 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 204.03 E-value: 4.74e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 26 KALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCKMLDPG-KPAFAPKKRKASVV 104
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtDLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 105 MFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENC 184
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 185 DLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGG 258
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 515681 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
9-296 |
2.10e-60 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 200.71 E-value: 2.10e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 9 GITRAIQQMSNVTIIDEKALNEcLNEItraLLQSDVSFPLVKEMQSNIKKIVNLEDLAAGhnkrRIIEQAIFSELCKMLD 88
Cdd:PRK10416 30 NFGEGINGLFAKKKIDEDLLEE-LEEL---LIEADVGVETTEEIIEELRERVKRKNLKDP----EELKELLKEELAEILE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 89 PGKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDP 168
Cdd:PRK10416 102 PVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADP 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 169 VKIAVEGVDTFKKENCDLIIVDTSGR-HKQeASLFEE---MRQV---AEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA 241
Cdd:PRK10416 182 ASVAFDAIQAAKARGIDVLIIDTAGRlHNK-TNLMEElkkIKRVikkADPDAPHEVLLVLDATTGQNALSQAKAFHEAVG 260
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 515681 242 VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:PRK10416 261 LTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
103-294 |
9.28e-54 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 179.30 E-value: 9.28e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKE 182
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 183 NCDLIIVDTSGRHKQEASLFEEMRQV------AEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKG 256
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIkrvikkKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 515681 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
10-296 |
2.28e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 140.77 E-value: 2.28e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 10 ITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDlaaghnkrriIEQAIFSELCKMLD- 88
Cdd:COG1419 86 LKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEE----------AWRALLEALARRLPv 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 89 PGKPAFAPKKrkasVVMFVGLQGAGKTTTCTKYA-YYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167
Cdd:COG1419 156 AEDPLLDEGG----VIALVGPTGVGKTTTIAKLAaRFVLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEE 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 168 pVKIAVEGVdtfkkENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSI-GQAAFDQAQAFKqSVAVGAVI 246
Cdd:COG1419 232 -LKEALERL-----RDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSATTkYEDLKEIVEAFS-SLGLDGLI 304
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 515681 247 ITKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 296
Cdd:COG1419 305 LTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
103-294 |
1.02e-35 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 131.58 E-value: 1.02e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKE 182
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 183 NCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGA----------VIITKMDG 252
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSpsdnprlidgIVLTKFDT 161
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 515681 253 -HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
328-427 |
3.76e-34 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 123.66 E-value: 3.76e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 328 FTLRIMYDQFQNILNMGPLKEVFSMLPGisaeMMPKGHEKESQAKIKRYMTMMDSMTNDELDSsgPKVFNESRMMRIARG 407
Cdd:pfam02978 2 FTLRDFLEQLQQIKKMGPLSKILSMIPG----MGKKDDDIDSEKKLKRIEAIIDSMTPKERDN--PDIINASRKRRIARG 75
|
90 100
....*....|....*....|
gi 515681 408 SGRQVREVMEMLEEYKRLAK 427
Cdd:pfam02978 76 SGTSVQEVNRLLKQFKQMKK 95
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
103-294 |
2.42e-29 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 113.80 E-value: 2.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYA-YYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDpVKIAVEGVdtfkk 181
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAaRYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPED-LADALERL----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMdsSIGQAAFDQAQAFKQ--SVAVGAVIITKMDGHAKGGGA 259
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVL--SATTKAKDLKEIIERfsPLGYRGLILTKLDETTSLGSV 153
|
170 180 190
....*....|....*....|....*....|....*.
gi 515681 260 LSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRL 294
Cdd:cd17873 154 LSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
34-296 |
4.06e-27 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 113.07 E-value: 4.06e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 34 EITRALLQSDVSFPLVKEMqsnIKKIVNLEDLAAGHNKRRIIEQaifseLCKMLDPGKPAFAPKKRkasVVMFVGLQGAG 113
Cdd:PRK05703 165 ELYKRLKRSGLSPEIAEKL---LKLLLEHMPPRERTAWRYLLEL-----LANMIPVRVEDILKQGG---VVALVGPTGVG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 114 KTTTCTK----YAYYHQKKgyKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIavegVDTFKkeNCDLIIV 189
Cdd:PRK05703 234 KTTTLAKlaarYALLYGKK--KVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKA----LEQLR--DCDVILI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 190 DTSGRHKQEASLFEEMRQVAEATKPDLVIF-VMdSSIGQ-----AAFDQaqaFKQsVAVGAVIITKMDGHAKGGGALSAV 263
Cdd:PRK05703 306 DTAGRSQRDKRLIEELKALIEFSGEPIDVYlVL-SATTKyedlkDIYKH---FSR-LPLDGLIFTKLDETSSLGSILSLL 380
|
250 260 270
....*....|....*....|....*....|....
gi 515681 264 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 296
Cdd:PRK05703 381 IESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
23-193 |
9.04e-19 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 86.23 E-value: 9.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 23 IDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDlaaghnkrriIEQAIFSELCKMLdPGKPAFAPKKRKAS 102
Cdd:TIGR03499 127 LAWLQRPPERAKLYERLLEAGVSEELARELLEKLPEDADAED----------AWRWLREALEGML-PVKPEEDPILEQGG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTK----YAYYHQKKgyKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDpVKIAVEgvdt 178
Cdd:TIGR03499 196 VIALVGPTGVGKTTTLAKlaarFALEHGKK--KVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE-LREALD---- 268
|
170
....*....|....*
gi 515681 179 fKKENCDLIIVDTSG 193
Cdd:TIGR03499 269 -RLRDKDLILIDTAG 282
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
6.09e-14 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 66.72 E-value: 6.09e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515681 6 LGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKK-IVNLEDLaaghNKRRIIEQAIFSEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREkAVGEKKL----KPPQEVKKILKEEL 75
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
103-281 |
2.31e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 71.69 E-value: 2.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFygsYTESDPVKIAvEGVDTFKKE 182
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL---IVATSPAELE-EAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 183 NC-DLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:PRK12726 284 NCvDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYT 363
|
170 180
....*....|....*....|
gi 515681 262 AVAATKSPVIFIGTGEHMDE 281
Cdd:PRK12726 364 VMQETNLPVLYMTDGQNITE 383
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
21-251 |
7.56e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 67.30 E-value: 7.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 21 TIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNkrrIIEQAI-FSELCKMLDPGKPAFAPK-K 98
Cdd:PRK12724 146 TTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHN---VTERAVtYLEERVSVDSDLFSGTGKnQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 99 RKasVVMFVGLQGAGKTTTCTKYAY-YHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYgsytesdPVKIAVEGVD 177
Cdd:PRK12724 223 RK--VVFFVGPTGSGKTTSIAKLAAkYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-------PVKDIKKFKE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 178 TFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEA-TKPDLV--IFVMDSSigqAAFDQAQAFK---QSVAVGAVIITKMD 251
Cdd:PRK12724 294 TLARDGSELILIDTAGYSHRNLEQLERMQSFYSCfGEKDSVenLLVLSST---SSYHHTLTVLkayESLNYRRILLTKLD 370
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
32-308 |
3.20e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 61.84 E-value: 3.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 32 LNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLaaghNKRRIIEQAIFSELCKMLDPGKPAFAPKKRKasVVMFVGLQG 111
Cdd:PRK12723 111 ILKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCSGSIIDNLKKR--VFILVGPTG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 112 AGKTTTCTKYAYYH----QKKGYKPALVCADTFRAGAfdqlkqnatKAKIPFYGsytesDPVKIAVEGVDTFKK------ 181
Cdd:PRK12723 185 VGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGA---------KKQIQTYG-----DIMGIPVKAIESFKDlkeeit 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 182 --ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAfDQAQAFKQSVAVG--AVIITKMDGHAKGG 257
Cdd:PRK12723 251 qsKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS-DVKEIFHQFSPFSykTVIFTKLDETTCVG 329
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 515681 258 GALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLG--MGDWSGFVDKLQ 308
Cdd:PRK12723 330 NLISLIYEMRKEVSYVTDGQIVPHnISIAEPLTFIKKINGyrISDDAEFIRKLK 383
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
98-277 |
3.30e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 62.01 E-value: 3.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 98 KRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNatkakIPFYGSYTESDPVKIAVEGVD 177
Cdd:PRK11889 238 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY-----VKTIGFEVIAVRDEAAMTRAL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 178 TFKKENC--DLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAK 255
Cdd:PRK11889 313 TYFKEEArvDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETAS 392
|
170 180
....*....|....*....|..
gi 515681 256 GGGALSAVAATKSPVIFIGTGE 277
Cdd:PRK11889 393 SGELLKIPAVSSAPIVLMTDGQ 414
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
4.97e-10 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 55.64 E-value: 4.97e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515681 10 ITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEqAIFSELCKML 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEVLKGLTPKQEVKK-ILKEELVKIL 77
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
98-277 |
5.27e-10 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 60.15 E-value: 5.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 98 KRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKiaveGVD 177
Cdd:PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR----ALT 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 178 TFKKE-NCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKG 256
Cdd:PRK06731 148 YFKEEaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASS 227
|
170 180
....*....|....*....|.
gi 515681 257 GGALSAVAATKSPVIFIGTGE 277
Cdd:PRK06731 228 GELLKIPAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
2-324 |
5.81e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 57.81 E-value: 5.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 2 VLAELGGGITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNkrriIEQAIFS 81
Cdd:PRK14722 46 VMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAAD----WAQSVLA 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 82 ELCKMLDPGKPAFapkkRKASVVMFVGLQGAGKTTTCTKYAYYHQKK--GYKPALVCADTFRAGAFDQLKQNATKAKIPF 159
Cdd:PRK14722 122 ANLPVLDSEDALM----ERGGVFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLRIFGKILGVPV 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 160 YGSYTESDpVKIAVEGVdtfkkENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMD-SSIGQAAFDQAQAFKQ 238
Cdd:PRK14722 198 HAVKDGGD-LQLALAEL-----RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNaTSHGDTLNEVVQAYRS 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 239 SVA--------VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRllgmgdwSGFVDKLQE- 309
Cdd:PRK14722 272 AAGqpkaalpdLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLK-------SAFCAPREDs 344
|
330
....*....|....*..
gi 515681 310 -VVPKDQQ-PELLEKLS 324
Cdd:PRK14722 345 pFVPHDDDlPAMLSALS 361
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
103-295 |
7.84e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 58.27 E-value: 7.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYA--YYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGsytesdpVKIAVEGVDTFK 180
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAarCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHA-------VKDAADLRFALA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 181 K-ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMD-SSIGQAAFDQAQAFKQSVA--VGAVIITKMDGHAKG 256
Cdd:PRK14723 260 AlGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNaASHGDTLNEVVHAYRHGAGedVDGCIITKLDEATHL 339
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 515681 257 GGALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLL 295
Cdd:PRK14723 340 GPALDTVIRHRLPVHYVSTGQKVPEhLELAQADELVDRAF 379
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
103-208 |
1.37e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQnatkakIPFYGSYTESDPVKIAVEGVDTFKKE 182
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL------IIVGGKKASGSGELRLRLALALARKL 77
|
90 100
....*....|....*....|....*.
gi 515681 183 NCDLIIVDTSGRHKQEASLFEEMRQV 208
Cdd:smart00382 78 KPDVLILDEITSLLDAEQEALLLLLE 103
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
103-281 |
5.40e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 48.83 E-value: 5.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 103 VVMFVGLQGAGKTTTCTKYA--YYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIaVEGVDTFK 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAqrFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL-LERLRDYK 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 181 kencdLIIVDTSG---RHKQEASLFEEMRQVAEATKpdLVIFVMDSSIGQaaFDQAQAFKQSVAVGAVIITKMDGHAKGG 257
Cdd:PRK12727 431 -----LVLIDTAGmgqRDRALAAQLNWLRAARQVTS--LLVLPANAHFSD--LDEVVRRFAHAKPQGVVLTKLDETGRFG 501
|
170 180
....*....|....*....|....
gi 515681 258 GALSAVAATKSPVIFIGTGEHMDE 281
Cdd:PRK12727 502 SALSVVVDHQMPITWVTDGQRVPD 525
|
|
| Grc3 |
COG1341 |
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and ... |
98-220 |
3.27e-05 |
|
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440952 Cd Length: 353 Bit Score: 46.17 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 98 KRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCAD--------------TFRAGAFDQLKQnATKAKIPFYGSY 163
Cdd:COG1341 32 SSGPGRIMVLGPVDSGKSTLTTLLANKLLAEGLKVAIIDADvgqsdlgppttvslGLVREPVLSLSE-LKAEKLRFVGSI 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515681 164 TESDPVKIAVEG----VDTFKKENCDLIIVDTSGrHKQEASLFEEMRQVAEATKPDLVIFV 220
Cdd:COG1341 111 SPSGHLLRIVAGvkrlVERAKERGADRIVIDTDG-WVRGPAAREYKAALIEALKPDLIVVL 170
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
100-281 |
1.55e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 44.17 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 100 KASVVMFVGLQGAGKTTTCTKYAY--YHQKKGYKPALVCADTFRAGAFDQLKqnatkakipFYG--------SYTESDPV 169
Cdd:PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAraVIRHGADKVALLTTDSYRIGGHEQLR---------IYGkllgvsvrSIKDIADL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 170 KIAvegVDTFKKENcdLIIVDTSGRHKQEASLFEEMRQVAEA-TKPDLVIFVMDSSIGQAAFDQAQAFKQSvAVGAVIIT 248
Cdd:PRK14721 261 QLM---LHELRGKH--MVLIDTVGMSQRDQMLAEQIAMLSQCgTQVKHLLLLNATSSGDTLDEVISAYQGH-GIHGCIIT 334
|
170 180 190
....*....|....*....|....*....|...
gi 515681 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDE 281
Cdd:PRK14721 335 KVDEAASLGIALDAVIRRKLVLHYVTNGQKVPE 367
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
102-223 |
1.27e-03 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 40.28 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVcadTFRAGAfDQLKQNATKAKIPFyGSYTESDpvkiavegvdtfkk 181
Cdd:COG0467 21 SSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYV---SFEESP-EQLLRRAESLGLDL-EEYIESG-------------- 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 515681 182 encDLIIVDTSGRHKQE--ASLFEEMRQVAEATKPDLVIFvmDS 223
Cdd:COG0467 82 ---LLRIIDLSPEELGLdlEELLARLREAVEEFGAKRVVI--DS 120
|
|
| Era_like |
cd00880 |
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family ... |
167-251 |
7.59e-03 |
|
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.
Pssm-ID: 206646 [Multi-domain] Cd Length: 161 Bit Score: 37.23 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515681 167 DPVKIAVEgvdtfKKENCDLIIVDTSG----RHKQEAsLFEEMRQVAEATkpDLVIFVMDSSIGQaaFDQAQAFKQSVAV 242
Cdd:cd00880 34 DPVRKEWE-----LLPLGPVVLIDTPGldeeGGLGRE-RVEEARQVADRA--DLVLLVVDSDLTP--VEEEAKLGLLRER 103
|
90
....*....|..
gi 515681 243 GA---VIITKMD 251
Cdd:cd00880 104 GKpvlLVLNKID 115
|
|
| |
