NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|309853|gb|AAA25728|]
View 

avirulence protein [Pseudomonas syringae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
AvrPto pfam11592
Central core of the bacterial effector protein AvrPto; This family of proteins represents the ...
 29-133 7.84e-67

Central core of the bacterial effector protein AvrPto; This family of proteins represents the bacterial effector protein AvrPto from Pseudomonas syringae. This is the central core region of the protein which consists of a three-helix bundle motif. AvrPto is part of a type III secretion system from P.syringae which is involved in the bacterial speck disease of tomato. In resistant plants, AvrPto interacts with the host Pto kinase, which elicits an antibacterial defense response. In plants lacking resistance, the Pto kinase is not present and AvrPto acts as a virulence factor, promoting bacterial growth.


:

Pssm-ID: 288446  Cd Length: 105  Bit Score: 198.91  E-value: 7.84e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309853      29 DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDD 108
Cdd:pfam11592   1 DNVTSSQLLSVRHQLAESAGVPRDQHEFVSNQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDD 80

                          90       100
                  ....*....|....*....|....*
gi 309853     109 MRSAITDWSDMREALQHAMGIHADI 133
Cdd:pfam11592  81 MRSAITDWSDMREALQYAMGIHADI 105
 
Name Accession Description Interval E-value
AvrPto pfam11592
Central core of the bacterial effector protein AvrPto; This family of proteins represents the ...
 29-133 7.84e-67

Central core of the bacterial effector protein AvrPto; This family of proteins represents the bacterial effector protein AvrPto from Pseudomonas syringae. This is the central core region of the protein which consists of a three-helix bundle motif. AvrPto is part of a type III secretion system from P.syringae which is involved in the bacterial speck disease of tomato. In resistant plants, AvrPto interacts with the host Pto kinase, which elicits an antibacterial defense response. In plants lacking resistance, the Pto kinase is not present and AvrPto acts as a virulence factor, promoting bacterial growth.


Pssm-ID: 288446  Cd Length: 105  Bit Score: 198.91  E-value: 7.84e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309853      29 DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDD 108
Cdd:pfam11592   1 DNVTSSQLLSVRHQLAESAGVPRDQHEFVSNQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDD 80

                          90       100
                  ....*....|....*....|....*
gi 309853     109 MRSAITDWSDMREALQHAMGIHADI 133
Cdd:pfam11592  81 MRSAITDWSDMREALQYAMGIHADI 105
 
Name Accession Description Interval E-value
AvrPto pfam11592
Central core of the bacterial effector protein AvrPto; This family of proteins represents the ...
 29-133 7.84e-67

Central core of the bacterial effector protein AvrPto; This family of proteins represents the bacterial effector protein AvrPto from Pseudomonas syringae. This is the central core region of the protein which consists of a three-helix bundle motif. AvrPto is part of a type III secretion system from P.syringae which is involved in the bacterial speck disease of tomato. In resistant plants, AvrPto interacts with the host Pto kinase, which elicits an antibacterial defense response. In plants lacking resistance, the Pto kinase is not present and AvrPto acts as a virulence factor, promoting bacterial growth.


Pssm-ID: 288446  Cd Length: 105  Bit Score: 198.91  E-value: 7.84e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309853      29 DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDD 108
Cdd:pfam11592   1 DNVTSSQLLSVRHQLAESAGVPRDQHEFVSNQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDD 80

                          90       100
                  ....*....|....*....|....*
gi 309853     109 MRSAITDWSDMREALQHAMGIHADI 133
Cdd:pfam11592  81 MRSAITDWSDMREALQYAMGIHADI 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH