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Conserved domains on  [gi|160380508|sp|A6NJG6|]
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RecName: Full=Arginine-fifty homeobox

Protein Classification

homeobox domain-containing protein( domain architecture ID 10441114)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0003677
PubMed:  21557080|26464018|27768937|1357790
SCOP:  4000291

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
80-130 4.09e-17

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.07  E-value: 4.09e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 160380508   80 KERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRR 52
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
80-130 4.09e-17

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.07  E-value: 4.09e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 160380508   80 KERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRR 52
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 80-130 1.36e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 67.28  E-value: 1.36e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 160380508    80 KERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRR 53
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 80-130 7.56e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 64.96  E-value: 7.56e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 160380508  80 KERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRR 52
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
77-130 8.46e-07

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 47.82  E-value: 8.46e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 160380508  77 RRHKERTsfTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:COG5576   52 KSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKR 103
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
80-130 4.09e-17

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.07  E-value: 4.09e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 160380508   80 KERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRR 52
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 80-130 1.36e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 67.28  E-value: 1.36e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 160380508    80 KERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRR 53
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 80-130 7.56e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 64.96  E-value: 7.56e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 160380508  80 KERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRR 52
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
77-130 8.46e-07

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 47.82  E-value: 8.46e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 160380508  77 RRHKERTsfTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Cdd:COG5576   52 KSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKR 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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