View
Concise Results
Standard Results
Full Results
RecName: Full=NAD(P)H-quinone oxidoreductase subunit H, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit H; AltName: Full=NADH-plastoquinone oxidoreductase 49 kDa subunit; AltName: Full=NADH-plastoquinone oxidoreductase subunit H
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 882.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 1 MT R P V T G KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENR A IIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A T R KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENR T IIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERE FV YDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERE LI YDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 161 GG I AADLPYGWIDKCLDFCDYFLT E V V EYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGI P WDLRKVD R YE 240
Cdd:CHL00017 161 GG V AADLPYGWIDKCLDFCDYFLT G V A EYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGI Q WDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 241 S YDEF E WE I QWQK Q GDSLARYLVR LS EMTESIKIIQQALEG L PGGPYENLE S R G FDR KRNP EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEF D WE V QWQK E GDSLARYLVR IG EMTESIKIIQQALEG I PGGPYENLE A R R FDR EKDS EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 218527779 321 LSKQELYVRVEAPKGELGIFLIGD Q S G FPWRWKIRPPGFINLQILP E LVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D S V FPWRWKIRPPGFINLQILP Q LVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 882.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 1 MT R P V T G KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENR A IIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A T R KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENR T IIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERE FV YDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERE LI YDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 161 GG I AADLPYGWIDKCLDFCDYFLT E V V EYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGI P WDLRKVD R YE 240
Cdd:CHL00017 161 GG V AADLPYGWIDKCLDFCDYFLT G V A EYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGI Q WDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 241 S YDEF E WE I QWQK Q GDSLARYLVR LS EMTESIKIIQQALEG L PGGPYENLE S R G FDR KRNP EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEF D WE V QWQK E GDSLARYLVR IG EMTESIKIIQQALEG I PGGPYENLE A R R FDR EKDS EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 218527779 321 LSKQELYVRVEAPKGELGIFLIGD Q S G FPWRWKIRPPGFINLQILP E LVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D S V FPWRWKIRPPGFINLQILP Q LVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 582.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 7 GKDL M IV NMGP H HPS M HGVLRL IVT LDGE D VVD CE P IL GYLHRG M EK I AENR AII Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 ETEE M VL NMGP Q HPS T HGVLRL VLE LDGE T VVD AD P HI GYLHRG F EK L AENR TYT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE FVY DLFE AA TG M RM M HN F FRIGG IAA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE KIL DLFE EV TG A RM T HN Y FRIGG VRR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 167 LP Y G WID K CLD F C DYF LTEVV EY QK L I T R N P IF LE R VE GVG IIGG E E AI NW G LS GP M LRASG IPW DLRK VDR Y ES YDE FE 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VLSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE LD 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 247 WEIQWQKQ GD SLA RYLVR LS EM TE S IK II Q Q A L EG LP G GP YENLESRGFDRKRNPEWNDF E YRFIS - K KPSPT F ELSKQ E 325
Cdd:COG0649 243 FDVPVGTE GD CYD RYLVR ME EM RQ S LR II R Q C L DK LP E GP VMAKDPKIAPPPKEEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527779 326 L Y VR VE A P K GELG IF L IG D QSGF P W R W KIR P P G F I NLQ I LPE LV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LPE ML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
4.72e-157
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 447.17
E-value: 4.72e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 9 DL MI V N M GP H HPS M HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AENR AII QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y VV RAD P HI GYLHRG T EK L AENR TYQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE FVY DLFEA A TG M RM MHNF FRIGG I A A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE KIL DLFEA I TG A RM HSAY FRIGG V A L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 169 YG W IDKCLD F CDY F LTEVVE Y QK L ITR N P I FLE R VE GVG IIGGEE A IN WGL S GPMLR A SGI P WD L RK VDR YE S YDE FEWE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG VVSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G YDE YDFD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 249 IQWQKQ GD SLA RYL V R LS EM T ESIKII Q Q A LE GL P G GP Y enlesrgfd RKR NP ewndf EYRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 VPVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I --------- KAD NP ----- KLAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 321 L SKQ ------- E L YV RV E A PKGELG IFL I G D QSGF P W R W KIR P P G F IN LQ I L PELVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
3.68e-139
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 397.53
E-value: 3.68e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 125 I GA Q TPF F Y I FRERE FVY DLFE AA TG M RM M H NF FR I GG I A A DLP Y G WID K CLD F C DYF LTEVV EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE KIL DLFE RI TG A RM T H SY FR P GG V A R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 205 GVG IIGG E E A INW G LS GPMLRASG I PWDLRK VDR Y ES YDE FEWEIQWQKQ GD SLA RYLVR LS EM TE S IK II Q Q A L EG LP G 284
Cdd:pfam00346 81 GVG VLSA E D A LAL G VT GPMLRASG V PWDLRK DEP Y SG YDE LDFDVPVGTE GD CYD RYLVR ME EM RQ S LR II R Q C L DK LP E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 285 GP YENL esrgf D R K RNP -------- EWNDFEYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D QSGF P W R W KIR P 356
Cdd:pfam00346 161 GP VMAD ----- D P K IAL ppkeemkt SMEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A 233
250 260 270
....*....|....*....|....*....|....*..
gi 218527779 357 P G F I NLQ I LPE LV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 234 P S F A NLQ A LPE MC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 882.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 1 MT R P V T G KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENR A IIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A T R KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENR T IIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERE FV YDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERE LI YDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 161 GG I AADLPYGWIDKCLDFCDYFLT E V V EYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGI P WDLRKVD R YE 240
Cdd:CHL00017 161 GG V AADLPYGWIDKCLDFCDYFLT G V A EYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGI Q WDLRKVD H YE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 241 S YDEF E WE I QWQK Q GDSLARYLVR LS EMTESIKIIQQALEG L PGGPYENLE S R G FDR KRNP EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 C YDEF D WE V QWQK E GDSLARYLVR IG EMTESIKIIQQALEG I PGGPYENLE A R R FDR EKDS EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 218527779 321 LSKQELYVRVEAPKGELGIFLIGD Q S G FPWRWKIRPPGFINLQILP E LVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD D S V FPWRWKIRPPGFINLQILP Q LVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 716.13
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 1 M TRPV T GKDL M IV N M GPHHPSMHGVLRLIVTLDGEDVVDCEP IL GYLHRGMEKIAENR AIIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE T RTEP M VL N F GPHHPSMHGVLRLIVTLDGEDVVDCEP VI GYLHRGMEKIAENR TNVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 81 ITVN G PE Q L G NI Q VPKRASYIRVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE FV YDL F EAATG M R MM - H N F FR 159
Cdd:PRK07415 81 ITVN A PE K L A NI P VPKRASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE MI YDL W EAATG Q R LI n N N Y FR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 160 IGG I AADLPYGW ID KCLDFCDYF LTEVV EY Q KLIT R NPIF LE R V EG V G I I GG EEAINWGLSGPMLRASG IP WDLRKVD R Y 239
Cdd:PRK07415 161 IGG V AADLPYGW LE KCLDFCDYF GPKID EY E KLIT N NPIF RR R I EG L G T I SR EEAINWGLSGPMLRASG VK WDLRKVD H Y 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 240 E S YD E F E W EIQ W QKQ GD S LARY L VR LS EM T ES I KII Q QA LE G L PGGPYENLE SRGFDRKRNP EWN D F E Y RFIS KK PS PTF 319
Cdd:PRK07415 241 E C YD D F D W DVA W ETE GD C LARY R VR IE EM R ES V KII R QA CK G I PGGPYENLE AKRMAEGKKS EWN G F D Y QYVA KK VA PTF 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 218527779 320 ELSKQ ELYVR V E AP KGELGIF LI G DQSGF PWRWKIR PPG F I NLQILP E L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGIF IQ G NNDVT PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 582.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 7 GKDL M IV NMGP H HPS M HGVLRL IVT LDGE D VVD CE P IL GYLHRG M EK I AENR AII Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 ETEE M VL NMGP Q HPS T HGVLRL VLE LDGE T VVD AD P HI GYLHRG F EK L AENR TYT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE FVY DLFE AA TG M RM M HN F FRIGG IAA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE KIL DLFE EV TG A RM T HN Y FRIGG VRR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 167 LP Y G WID K CLD F C DYF LTEVV EY QK L I T R N P IF LE R VE GVG IIGG E E AI NW G LS GP M LRASG IPW DLRK VDR Y ES YDE FE 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVG VLSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE LD 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 247 WEIQWQKQ GD SLA RYLVR LS EM TE S IK II Q Q A L EG LP G GP YENLESRGFDRKRNPEWNDF E YRFIS - K KPSPT F ELSKQ E 325
Cdd:COG0649 243 FDVPVGTE GD CYD RYLVR ME EM RQ S LR II R Q C L DK LP E GP VMAKDPKIAPPPKEEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527779 326 L Y VR VE A P K GELG IF L IG D QSGF P W R W KIR P P G F I NLQ I LPE LV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LPE ML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
5-393
6.24e-170
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 480.04
E-value: 6.24e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 5 VTGKDLMIV N M GP H HP SM HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AE N R AII Q YL PY VT R W DY LAT M FT E AITVN 84
Cdd:PRK06075 1 EAEIRNYTL N F GP Q HP AA HGVLRLI LE LDGE V VV RAD P HI GYLHRG T EK L AE Y R TYL Q AI PY FD R L DY VSP M NN E HAYCL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 85 GP E Q L GN I Q VP K RA S YIRV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE FVY DL F EA A TG M RM M H NFF R I GG IA 164
Cdd:PRK06075 81 AV E K L LG I E VP E RA Q YIRV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H AYI R P GG VR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 165 A DLP Y G WIDKCL DF C DYF LTEVVE Y QK L I T R N P I FLE R VE GVG IIGG E E A INW G LS GPMLRASG IP WDLRK VDR YE S YDE 244
Cdd:PRK06075 161 R DLP D G LLEDIR DF L DYF PKRLDD Y ET L L T D N R I WKQ R LV GVG VVSK E R A LAL G FT GPMLRASG VA WDLRK SQP YE V YDE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 245 FEWEIQWQ K Q GD SLA RYLVR LS EM TE S IK II Q Q A L EG L -- P G GP YENLESRGFDRK R NPEWNDF E --- YR F is K KPSPT F 319
Cdd:PRK06075 241 LDFDVPVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L DR L rp P P GP VMVDDPKIAPPA R LEMKTSM E ali HH F -- K LVTEG F 318
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 218527779 320 ELSKQ E L Y VR VE A PKGE L G IF L IG D QSGF P W R W KIR P P G F IN LQ I L P E LVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 319 RVPAG E V Y AA VE S PKGE F G VY L VS D GGNK P Y R V KIR A P S F AH LQ A L D E MCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
11-393
1.87e-157
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 447.61
E-value: 1.87e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 11 M IV N M GP H HPS M HGV L RL IVTL DGE DV V DCE P IL GYLHRG M EK I AE NRAII Q YL PY VT R W DYL AT M FTEAITVNGP E QLG 90
Cdd:PRK12322 7 M LL N V GP Q HPS T HGV F RL VLKI DGE II V EAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCHAV E TMM 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 91 NIQ VP K RA S Y I RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE FVYD L FEAAT G M R MMH N FF RIGG IAA D L P Y G 170
Cdd:PRK12322 87 GLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE MIIN L LNELC G A R LTF N YM RIGG VKW D A P D G 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 171 WI D K CLD F CD Y FLTEVVE Y QK L I T R N P IFL E RV E GVGI IGG EEAI NWG LSG PM LR AS G IP WDLRK VDR Y ES YD E F EWE I Q 250
Cdd:PRK12322 167 WI E K VKE F VP Y MREQLAG Y HD L V T G N E IFL N RV K GVGI YSA EEAI SYS LSG VN LR CT G VN WDLRK DEP Y SI YD R F DFD I P 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 251 WQKQ GD SLA RY LV R LS E MTE S I KII Q QA L E GL P - G GP yenlesrgfdrkrnpewndfeyrf ISK K PSPTFELS K Q E L YVR 329
Cdd:PRK12322 247 VGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKAP K G E A YVR 302
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 218527779 330 V E A P K GE L G IFLIG D QSGF P W R W K I R P P G F I NLQILP E L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 303 I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
4.72e-157
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 447.17
E-value: 4.72e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 9 DL MI V N M GP H HPS M HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AENR AII QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y VV RAD P HI GYLHRG T EK L AENR TYQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE FVY DLFEA A TG M RM MHNF FRIGG I A A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE KIL DLFEA I TG A RM HSAY FRIGG V A L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 169 YG W IDKCLD F CDY F LTEVVE Y QK L ITR N P I FLE R VE GVG IIGGEE A IN WGL S GPMLR A SGI P WD L RK VDR YE S YDE FEWE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVG VVSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G YDE YDFD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 249 IQWQKQ GD SLA RYL V R LS EM T ESIKII Q Q A LE GL P G GP Y enlesrgfd RKR NP ewndf EYRFIS K KPSP T -------- F E 320
Cdd:TIGR01962 241 VPVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I --------- KAD NP ----- KLAPPP K ERML T smealihh F K 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 321 L SKQ ------- E L YV RV E A PKGELG IFL I G D QSGF P W R W KIR P P G F IN LQ I L PELVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 307 L VTE gfrvpag E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
3.68e-139
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 397.53
E-value: 3.68e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 125 I GA Q TPF F Y I FRERE FVY DLFE AA TG M RM M H NF FR I GG I A A DLP Y G WID K CLD F C DYF LTEVV EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE KIL DLFE RI TG A RM T H SY FR P GG V A R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 205 GVG IIGG E E A INW G LS GPMLRASG I PWDLRK VDR Y ES YDE FEWEIQWQKQ GD SLA RYLVR LS EM TE S IK II Q Q A L EG LP G 284
Cdd:pfam00346 81 GVG VLSA E D A LAL G VT GPMLRASG V PWDLRK DEP Y SG YDE LDFDVPVGTE GD CYD RYLVR ME EM RQ S LR II R Q C L DK LP E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 285 GP YENL esrgf D R K RNP -------- EWNDFEYR F is K KPSPT F ELSKQ E L YV R VEAPKGELG IF L IG D QSGF P W R W KIR P 356
Cdd:pfam00346 161 GP VMAD ----- D P K IAL ppkeemkt SMEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A 233
250 260 270
....*....|....*....|....*....|....*..
gi 218527779 357 P G F I NLQ I LPE LV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 234 P S F A NLQ A LPE MC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
7-393
2.63e-132
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 397.99
E-value: 2.63e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 7 GKDLM I V N M GP H HP SM HG VL R LIVT LDGE DV VD CEPIL GY L HRG M EKI A E NRAII Q YL PY VT R W DYLA TMFTEAIT VN GP 86
Cdd:PRK13292 401 DEETL I L N L GP Q HP GT HG II R FVLK LDGE EI VD MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV 480
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 87 E Q L GN I Q VP K RA S YIRV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE FVY D LF E AA TG M RM MHNF FRIGG I A A D 166
Cdd:PRK13292 481 E T L CG I E VP D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE KIF D IV E MI TG G RM HPAW FRIGG V A E D 560
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 167 LP Y GW IDKCLD F CDY F LTEVV EY QK L I T R NPIF LE R VE GVG I I GGE EA IN WG L SGP M LRA S G IP WDLRK VDR Y ES YD E F E 246
Cdd:PRK13292 561 LP E GW KEAVEA F LRW F PGRLK EY ED L L T G NPIF KA R LK GVG V I TRD EA VE WG I SGP N LRA C G LA WDLRK KMP Y GG YD R F D 640
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 247 W E IQWQKQ GD SL ARYLVR LS EM TE S IK I IQ QA LE G L PGG PYENLES R GFDRKRNPEWN D F E --- YR F ISKKPS P T fe LS K 323
Cdd:PRK13292 641 F E VPTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R YVLPQKRDTLK D I E sli HH F VNVTRG P A -- PP K 718
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 324 Q E L Y VRV EAPKGE L G I F LIG D QSGFPW R WK IR P P G F INL Q I LP E L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 719 G E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
1-393
9.11e-120
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 358.85
E-value: 9.11e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 1 M T R PVTGK D L M IV N M GP H HPS M HG VL R LIVT LDGE DV VDC E P IL GY L HRG M EK IA E NRAIIQ Y L PY VT R W DYL ATMFT E A 80
Cdd:PRK11742 182 M K R GTDNE D F M FL N L GP N HPS A HG AF R IVLQ LDGE EI VDC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E M 261
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 81 IT V NGP E Q L GN I Q VP K R ASY IRV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EFV YD LF EA A TG M RM MHNF FRI 160
Cdd:PRK11742 262 PY V LAV E K L AG I T VP D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QKI YD VI EA I TG F RM HPAW FRI 341
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 161 GG I A A DLP Y GW i D KC L - D F C D YFLTEVV EY Q K LIT RN P I FLE R VE GV GIIGGE EA IN WG LS G PM LRA S GI PW D L RK VDR Y 239
Cdd:PRK11742 342 GG V A H DLP R GW - D RL L r E F L D WMPKRLD EY E K AAL RN S I LKG R TQ GV AAYNAK EA LE WG VT G AG LRA T GI DF D V RK ARP Y 420
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 240 ES Y DE F EW E IQWQKQ GD SLA R YL V RLS EM TE S IK II Q Q A L EGL P G GP YENLESRGFDRKRNPEWNDF E --- YR F ISKKPS 316
Cdd:PRK11742 421 SG Y EN F DF E VPVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP FKADHPLTTPPPKERTLQHI E tli TH F LQVSWG 500
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 218527779 317 P T fe LSKQ E LYVRV EA P KG ELGIF L IG D Q S GFPW R WK IR P P G F IN LQ IL P ELVKRMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 501 P V -- MPAN E SFQMI EA T KG INSYY L TS D G S TMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
2-385
1.70e-101
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 309.21
E-value: 1.70e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 2 TRP V T G KDLMIVNM GP H H PSMHGVLRLIVTLD GE DVV D C E PI LGY L HRG M EK I AE N R AII Q Y L PYVT R ---------- WD 71
Cdd:COG3261 114 EMK V E G EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA 193
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 72 Y latmf TE A I tvngp E QLGN I Q VP K RA S Y I RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE F V Y DL F EA A TG M 151
Cdd:COG3261 194 Y ----- CQ A V ----- E KAAG I E VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE R V L DL N EA L TG N 263
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 152 R MMHNFFRI GG IAA DL PYGWIDKC L DFC D YFLT EV V E YQK L ITRN P IF L E R VE G V G IIGG E E A INW G LS GP ML RASG IPW 231
Cdd:COG3261 264 R VLRGINVP GG VRR DL DPEQLKAI L ERL D ELEE EV K E LVD L FLND P SV L D R LV G T G VLSK E D A RDL G AV GP VA RASG VDR 343
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527779 232 D L R KVDR Y ES YDE FEWEIQWQKQ GD SL AR Y LVRL S E MT ES IKI I Q QALE G LP G GP Y enlesrgfdrk R N P EWNDFEYRFI 311
Cdd:COG3261 344 D V R RDHP Y AA YDE LDFKVVTETE GD VY AR A LVRL E E IF ES LDL I R QALE K LP E GP I ----------- R V P VPGLPPDGEG 412
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 218527779 312 skkpsptfelskqel YV RVEAP K GEL GIFLIG D QS G FPW R W KIR P P G F I N LQI L PELVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 413 --------------- LG RVEAP R GEL VHYVRT D GD G RLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
