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Conserved domains on  [gi|218527800|sp|A4QKA8|]
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RecName: Full=NAD(P)H-quinone oxidoreductase subunit J, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit J; AltName: Full=NADH-plastoquinone oxidoreductase subunit J

Protein Classification

NAD(P)H-quinone oxidoreductase subunit J( domain architecture ID 10000005)

NAD(P)H-quinone oxidoreductase subunit J is part of the complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 1.15e-128

NADH dehydrogenase subunit J


:

Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 356.31  E-value: 1.15e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800   1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWDSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQ 80
Cdd:CHL00012   1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527800  81 AEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
Cdd:CHL00012  81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
 
Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 1.15e-128

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 356.31  E-value: 1.15e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800   1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWDSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQ 80
Cdd:CHL00012   1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527800  81 AEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
Cdd:CHL00012  81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
29-152 2.49e-44

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 141.85  E-value: 2.49e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800   29 LQIKPEDWDSIAVILY--VYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVnqaeEVCIKVFThRSNPRIPSVFWVWKS 106
Cdd:pfam00329   1 VTVDPEDLLEVARFLRddELGFDHLSDLTGVDYPEEGRFEVVYHLLSITHNV----RVRVKVPL-EDDPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 218527800  107 TDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFY 152
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 25-156 5.20e-42

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 137.27  E-value: 5.20e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800  25 GIETLQIKPEDWDSIAVILY-VYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGvnqaEEVCIKVFTHRSNPRIPSVFW 102
Cdd:COG0852   27 GELTLTVPPEDLVDVARFLRdDLGFDHLSDLTGVDyPERGDRFEVVYHLLSLTHN----RRLRLKVFVPRDDPVVPSVTD 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 218527800 103 VWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQD 156
Cdd:COG0852  103 VWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRY 156
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 47-146 2.22e-26

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 96.15  E-value: 2.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800   47 GYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNqaeeVCIKVFTHRSNPrIPSVFWVWKSTDFQERESYDMLGITYDSHP 126
Cdd:TIGR01961  23 GFELLTDVSGVDYPKEKRFEVVYHLLSIKKNRR----IRLKVRLSEDDP-VPSLTSVFPTANWYERETYDMYGIVFDGHP 97

                          90       100
                  ....*....|....*....|
gi 218527800  127 RLKRILMPESWIGWPLRKDY 146
Cdd:TIGR01961  98 DLRRILMPDDFEGHPLRKDY 117
 
Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 1.15e-128

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 356.31  E-value: 1.15e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800   1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWDSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQ 80
Cdd:CHL00012   1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 218527800  81 AEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
Cdd:CHL00012  81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
3-158 3.68e-79

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 231.77  E-value: 3.68e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800   3 GTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWDSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAE 82
Cdd:PRK12494  17 GPVSQWLTENGFEHESLGPDHLGVEIIKVEPDFLLPIATALYAYGFNYLQCQGGYDEGPGKELVSFYHLIKVSDNADKPR 96

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 218527800  83 EVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
Cdd:PRK12494  97 EVRLKVFLPRDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDYIQPDFYELQDAY 172
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
29-152 2.49e-44

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 141.85  E-value: 2.49e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800   29 LQIKPEDWDSIAVILY--VYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVnqaeEVCIKVFThRSNPRIPSVFWVWKS 106
Cdd:pfam00329   1 VTVDPEDLLEVARFLRddELGFDHLSDLTGVDYPEEGRFEVVYHLLSITHNV----RVRVKVPL-EDDPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 218527800  107 TDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFY 152
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 25-156 5.20e-42

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 137.27  E-value: 5.20e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800  25 GIETLQIKPEDWDSIAVILY-VYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGvnqaEEVCIKVFTHRSNPRIPSVFW 102
Cdd:COG0852   27 GELTLTVPPEDLVDVARFLRdDLGFDHLSDLTGVDyPERGDRFEVVYHLLSLTHN----RRLRLKVFVPRDDPVVPSVTD 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 218527800 103 VWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQD 156
Cdd:COG0852  103 VWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRY 156
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 47-146 2.22e-26

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 96.15  E-value: 2.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800   47 GYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNqaeeVCIKVFTHRSNPrIPSVFWVWKSTDFQERESYDMLGITYDSHP 126
Cdd:TIGR01961  23 GFELLTDVSGVDYPKEKRFEVVYHLLSIKKNRR----IRLKVRLSEDDP-VPSLTSVFPTANWYERETYDMYGIVFDGHP 97

                          90       100
                  ....*....|....*....|
gi 218527800  127 RLKRILMPESWIGWPLRKDY 146
Cdd:TIGR01961  98 DLRRILMPDDFEGHPLRKDY 117
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 65-146 9.03e-26

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 97.75  E-value: 9.03e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800  65 LASVYHLTRIEYGVNQAEEVCIKVfthrSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRK 144
Cdd:PRK07785 134 LHAVYHLTSITHNRRIRLEVAVPD----ADPHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRK 209


                 ..
gi 218527800 145 DY 146
Cdd:PRK07785 210 DY 211
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 28-146 1.28e-24

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 93.82  E-value: 1.28e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800  28 TLQIKPEDWDSIAVIL---YVYGYNYLRSQCAYD-VAPGGLLASVYHLtrieYGVNQAEEVCIKVFTHRsNPRIPSVFWV 103
Cdd:PRK06074  30 TLKVPAEKILEVLTFLrddPELRFEQLIDLTGVDyPERGKRFEVVYHL----LSYKHNVRLRVKVRAPE-DPVVPSVVDI 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 218527800 104 WKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK06074 105 WPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDF 147
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
28-146 3.98e-24

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 96.59  E-value: 3.98e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800  28 TLQIKPEDWDSIAVILYVY---GYNYLRSQCAYDVAPGglLASVYHLtrIEYGVNQAeeVCIKVFTHRSNPRIPSVFWVW 104
Cdd:PRK07735 308 TLVVEPEKYYEVAELLRFHeqlAFDYLSELHGTDFVTH--MEVYVHL--YSYGKRQS--VAVKVKLDREAPQVESVTPLW 381

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 218527800 105 KSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK07735 382 KGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 25-148 1.78e-21

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 89.60  E-value: 1.78e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800  25 GIETLQIKPEDWdsIAVILYVYG----YNYLRSQCAYD----VAPGGLLAS----VYHLTRIEygvnQAEEVCIKVFTHR 92
Cdd:PRK11742  22 GIPVVWVKREQL--LEVLRFLRKlpkpYVMLFDLHGIDerlrTHREGLPAAdftvFYHLISIE----RNRDIMLKVALSE 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 218527800  93 SNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIA 148
Cdd:PRK11742  96 NDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPA 151
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
28-146 6.79e-20

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 82.80  E-value: 6.79e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800  28 TLQIKPEDWDSIAVILYVYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEygvnQAEEVCIKVFThRSNPRIPSVFWVWKS 106
Cdd:PRK08491  60 VIWIKKDDNFKVLKILKHLGYECLSEMSAIDfLAKKGGFEVFYQLLSMS----KRKRVRVKCFL-KEKEALQSVSFLFKS 134

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 218527800 107 TDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK08491 135 ANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSY 174
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
68-146 2.80e-19

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 83.29  E-value: 2.80e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 218527800  68 VYHLTRIEygvnQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK13292 296 NYHLLSFD----TPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEH 370
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
28-149 2.77e-11

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 60.35  E-value: 2.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 218527800  28 TLQIKPEDWDSIAVILYVYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGVNqaeeVCIKVFTHRSNPRIPSVFWVWKS 106
Cdd:COG3262   27 WVEVDREDLPELAEFLAEGGGGRLAALWGNDeRELGGGFAVYYVFALEGEGAL----VTLKVSVPKDDPVFPSITDLFPA 102

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 218527800 107 TDFQERESYDMLGITYDSHPRLKRILMPESW-IGW-PLRKDYIAP 149
Cdd:COG3262  103 ASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGIyPLRKDFKGG 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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