NCBI Conserved Domain Search

Conserved domains on [gi|2425373678|pdb|8BED|R]

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Chain R, NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

Protein Classification

zinc-finger domain-containing protein( domain architecture ID 10563207)

zinc-finger domain-containing protein similar to NADH:ubiquinone oxidoreductase subunit S6 (NDUFS6), an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to not be involved in catalysis; it harbors a Zn-binding site and is essential for biogenesis of mitochondrial complex I

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List of domain hits

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

67-104

4.90e-15

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 63.32 E-value: 4.90e-15

                          10        20        30
                  ....*....|....*....|....*....|....*...
8BED_R         67 GRIVACEGDtNPALGHPIEFICLDLNEPAICKYCGLRY 104
Cdd:pfam10276   1 GRRVACDGG-GGALGHPRVYINLDKPGPVECPYCGLRF 37

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

67-104

4.90e-15

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 63.32 E-value: 4.90e-15

                          10        20        30
                  ....*....|....*....|....*....|....*...
8BED_R         67 GRIVACEGDtNPALGHPIEFICLDLNEPAICKYCGLRY 104
Cdd:pfam10276   1 GRRVACDGG-GGALGHPRVYINLDKPGPVECPYCGLRF 37

COG4391

Uncharacterized protein, contains Zn-finger domain [Function unknown];

60-107

1.15e-04

Uncharacterized protein, contains Zn-finger domain [Function unknown];

Pssm-ID: 443517 Cd Length: 54 Bit Score: 37.16 E-value: 1.15e-04

                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
8BED_R       60 VPPIKVDGRIVACEGDtNPALGHPIEFICLDLNEPAICKYCGLRYVQD 107
Cdd:COG4391   3 PETIEVTAKDVSCPGP-EGWLGHPRVFLDIGETGEVECPYCGTLYVLK 49

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

67-104

4.90e-15

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 63.32 E-value: 4.90e-15

                          10        20        30
                  ....*....|....*....|....*....|....*...
8BED_R         67 GRIVACEGDtNPALGHPIEFICLDLNEPAICKYCGLRY 104
Cdd:pfam10276   1 GRRVACDGG-GGALGHPRVYINLDKPGPVECPYCGLRF 37

COG4391

Uncharacterized protein, contains Zn-finger domain [Function unknown];

60-107

1.15e-04

Uncharacterized protein, contains Zn-finger domain [Function unknown];

Pssm-ID: 443517 Cd Length: 54 Bit Score: 37.16 E-value: 1.15e-04

                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
8BED_R       60 VPPIKVDGRIVACEGDtNPALGHPIEFICLDLNEPAICKYCGLRYVQD 107
Cdd:COG4391   3 PETIEVTAKDVSCPGP-EGWLGHPRVFLDIGETGEVECPYCGTLYVLK 49

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01