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Conserved domains on  [gi|1700030407|pdb|6NZJ|A]
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Chain A, Nitrogenase iron protein

Protein Classification

nitrogenase iron protein; nitrogenase iron protein; nitrogenase iron protein; nitrogenase iron protein NifH( domain architecture ID 10787575)

nitrogenase iron protein NifH is the component II (iron protein) of nitrogenase that catalyzes the ATP-dependent reduction of dinitrogen to ammonia, which is central to the process of biological nitrogen fixation; nitrogenase iron protein NifH is the component II of nitogenase, which is responsible for the biological nitrogen fixation (reduction of molecular nitrogen to ammonia) in an ATP-dependent process; nitrogenase iron protein NifH is the component II of nitogenase, which is responsible for the biological nitrogen fixation (reduction of molecular nitrogen to ammonia) in an ATP-dependent process; nitrogenase iron protein NifH is the component II of nitogenase, which is responsible for the biological nitrogen fixation (reduction of molecular nitrogen to ammonia) in an ATP-dependent process

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NifH/CfbC COG1348
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport ...
 1-273 0e+00

Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440959  Cd Length: 276  Bit Score: 529.74  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEgIDLDTVLQPGFGG 80
Cdd:COG1348   2 MRQIAIYGKGGIGKSTTSSNLSAALAEMGKKVMQIGCDPKADSTRLLLGGKRIPTVLDTLREKGED-VELEDIVFEGFGG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:COG1348  81 VKCVEAGGPEPGVGCAGRGIITAIELLEELGAYEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEFMALYAAN 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      161 NICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLT 239
Cdd:COG1348 161 NICKGIKKYANrGGVRLGGIICNSRNVDGERELVEEFAERLGTQIIAFVPRSNIVQRAELNGKTVIEYAPDSEQADEYRE 240

                       250       260       270
                ....*....|....*....|....*....|....
6NZJ_A      240 LADNVQNNNKLVVPTPLPMEELEAMMVEFGIVEL 273
Cdd:COG1348 241 LAKKILENKKLVIPKPLSDEELEELLLEYGILEK 274
 
Name Accession Description Interval E-value
NifH/CfbC COG1348
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport ...
 1-273 0e+00

Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440959  Cd Length: 276  Bit Score: 529.74  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEgIDLDTVLQPGFGG 80
Cdd:COG1348   2 MRQIAIYGKGGIGKSTTSSNLSAALAEMGKKVMQIGCDPKADSTRLLLGGKRIPTVLDTLREKGED-VELEDIVFEGFGG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:COG1348  81 VKCVEAGGPEPGVGCAGRGIITAIELLEELGAYEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEFMALYAAN 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      161 NICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLT 239
Cdd:COG1348 161 NICKGIKKYANrGGVRLGGIICNSRNVDGERELVEEFAERLGTQIIAFVPRSNIVQRAELNGKTVIEYAPDSEQADEYRE 240

                       250       260       270
                ....*....|....*....|....*....|....
6NZJ_A      240 LADNVQNNNKLVVPTPLPMEELEAMMVEFGIVEL 273
Cdd:COG1348 241 LAKKILENKKLVIPKPLSDEELEELLLEYGILEK 274
NifH cd02040
nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. ...
 2-266 1.40e-172

nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.


Pssm-ID: 349759  Cd Length: 265  Bit Score: 476.62  E-value: 1.40e-172
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRsEGDEGIDLDTVLQPGFGGI 81
Cdd:cd02040   1 RQIAIYGKGGIGKSTTASNLSAALAEMGKKVLHVGCDPKADSTRLLLGGKAIPTVLDTLR-EKGEVEELEDVIKEGFNGI 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANN 161
Cdd:cd02040  80 KCVESGGPEPGVGCAGRGIITAINLLEELGAYEEDLDVVFYDVLGDVVCGGFAMPIREGYADEVYIVTSGEMMALYAANN 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      162 ICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTL 240
Cdd:cd02040 160 IAKGIVKYAErGGVRLGGLICNSRNVDREEELVEEFAERLGTQIIHFVPRSNEVQEAELRGKTVIEYDPDSEQADEYREL 239

                       250       260
                ....*....|....*....|....*.
6NZJ_A      241 ADNVQNNNKLVVPTPLPMEELEAMMV 266
Cdd:cd02040 240 AKKILENKKLVIPKPLTMEELEELLM 265
nifH TIGR01287
nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also ...
 2-273 1.22e-171

nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. [Central intermediary metabolism, Nitrogen fixation]


Pssm-ID: 273538  Cd Length: 275  Bit Score: 474.95  E-value: 1.22e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGIDLDTVLQPGFGGI 81
Cdd:TIGR01287   1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANN 161
Cdd:TIGR01287  81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        162 ICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTL 240
Cdd:TIGR01287 161 ICKGILKYAKsGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYDPESEQANEYREL 240

                         250       260       270
                  ....*....|....*....|....*....|...
6NZJ_A        241 ADNVQNNNKLVVPTPLPMEELEAMMVEFGIVEL 273
Cdd:TIGR01287 241 AKKIYENTEFVIPTPLTMDELEEILMKFGIMLK 273
nifH PRK13233
nitrogenase iron protein;
2-272 1.92e-155

nitrogenase iron protein;


Pssm-ID: 183905  Cd Length: 275  Bit Score: 433.86  E-value: 1.92e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         2 RQIAIYGKGGIGKSTTTQNLTAALSTM-GNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGIDLDTVLQPGFGG 80
Cdd:PRK13233   3 RKIAIYGKGGIGKSTTTQNTAAAMAYFhDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKD 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:PRK13233  83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAYTDDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGEMMAIYAAN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       161 NICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLT 239
Cdd:PRK13233 163 NICKGLVKYAEqSGVRLGGIICNSRNVDGELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKTVVEFDPDCNQAKEYKE 242

                        250       260       270
                 ....*....|....*....|....*....|...
6NZJ_A       240 LADNVQNNNKLVVPTPLPMEELEAMMVEFGIVE 272
Cdd:PRK13233 243 LARKIIENKDFVIPKPLTMDELEEMVVKYGLMD 275
F430_CfbC NF033200
Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, ...
 2-265 1.30e-150

Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, very closely related to the nitrogenase iron protein, was identified as a subunit involved in biosynthesis of coenzyme F430 in archaeal methanogens and archaeal anaerobic methanotrophs.


Pssm-ID: 380202  Cd Length: 260  Bit Score: 420.82  E-value: 1.30e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDegIDLDTVLQPGFGGI 81
Cdd:NF033200   1 KQIAIYGKGGIGKSTTVSNLAAALSEEGKKVMVIGCDPKADSTRTLMGGRRIPTILDLLRENKN--IKEEDVVFEGYGGV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANN 161
Cdd:NF033200  79 RCVESGGPEPGVGCAGRGIIVAMQLLEKLGAFMEDLDVIIYDVLGDVVCGGFAVPLREGYADEVYIVTSGEYMSLYAANN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       162 ICKGLAKFAkggARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTLA 241
Cdd:NF033200 159 ICKGIKKLK---GRLGGIICNSRNIENEEEIVEEFAERIGSRLIGFIPRSELVQKSELEAKTVIEKAPDSEQAAVYRKLA 235

                        250       260
                 ....*....|....*....|....
6NZJ_A       242 DNVQNNNKLVVPTPLPMEELEAMM 265
Cdd:NF033200 236 KKIMENTDFVIPEPLEDEELEELF 259
Fer4_NifH pfam00142
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;
2-270 1.65e-143

4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;


Pssm-ID: 395090  Cd Length: 271  Bit Score: 403.36  E-value: 1.65e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEG-DEGIDLDTVLQPGFGG 80
Cdd:pfam00142   1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLVVGCDPKADSTRLLLGGKLQPTVLDTAREKGyVEDVEVEDVVYKGYGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYtDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:pfam00142  81 VKCVESGGPEPGVGCAGRGVITAINLLEELGAY-DDLDFVLYDVLGDVVCGGFAMPIREGKAQEIYIVTSNEMMALYAAN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        161 NICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLT 239
Cdd:pfam00142 160 NIAKGIQKYAKsGGVRLGGIICNSRKVDDERELIDAFAEELGTQVLHFVPRDNIVRKAELRKQTVIEYAPDSEQAQEYRE 239

                         250       260       270
                  ....*....|....*....|....*....|.
6NZJ_A        240 LADNVQNNNKLVVPTPLPMEELEAMMVEFGI 270
Cdd:pfam00142 240 LARKILENPKGTIPTPLSMDELEALLEDFGL 270
 
Name Accession Description Interval E-value
NifH/CfbC COG1348
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport ...
 1-273 0e+00

Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440959  Cd Length: 276  Bit Score: 529.74  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEgIDLDTVLQPGFGG 80
Cdd:COG1348   2 MRQIAIYGKGGIGKSTTSSNLSAALAEMGKKVMQIGCDPKADSTRLLLGGKRIPTVLDTLREKGED-VELEDIVFEGFGG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:COG1348  81 VKCVEAGGPEPGVGCAGRGIITAIELLEELGAYEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEFMALYAAN 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      161 NICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLT 239
Cdd:COG1348 161 NICKGIKKYANrGGVRLGGIICNSRNVDGERELVEEFAERLGTQIIAFVPRSNIVQRAELNGKTVIEYAPDSEQADEYRE 240

                       250       260       270
                ....*....|....*....|....*....|....
6NZJ_A      240 LADNVQNNNKLVVPTPLPMEELEAMMVEFGIVEL 273
Cdd:COG1348 241 LAKKILENKKLVIPKPLSDEELEELLLEYGILEK 274
NifH cd02040
nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. ...
 2-266 1.40e-172

nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.


Pssm-ID: 349759  Cd Length: 265  Bit Score: 476.62  E-value: 1.40e-172
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRsEGDEGIDLDTVLQPGFGGI 81
Cdd:cd02040   1 RQIAIYGKGGIGKSTTASNLSAALAEMGKKVLHVGCDPKADSTRLLLGGKAIPTVLDTLR-EKGEVEELEDVIKEGFNGI 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANN 161
Cdd:cd02040  80 KCVESGGPEPGVGCAGRGIITAINLLEELGAYEEDLDVVFYDVLGDVVCGGFAMPIREGYADEVYIVTSGEMMALYAANN 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      162 ICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTL 240
Cdd:cd02040 160 IAKGIVKYAErGGVRLGGLICNSRNVDREEELVEEFAERLGTQIIHFVPRSNEVQEAELRGKTVIEYDPDSEQADEYREL 239

                       250       260
                ....*....|....*....|....*.
6NZJ_A      241 ADNVQNNNKLVVPTPLPMEELEAMMV 266
Cdd:cd02040 240 AKKILENKKLVIPKPLTMEELEELLM 265
nifH TIGR01287
nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also ...
 2-273 1.22e-171

nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. [Central intermediary metabolism, Nitrogen fixation]


Pssm-ID: 273538  Cd Length: 275  Bit Score: 474.95  E-value: 1.22e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGIDLDTVLQPGFGGI 81
Cdd:TIGR01287   1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANN 161
Cdd:TIGR01287  81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        162 ICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTL 240
Cdd:TIGR01287 161 ICKGILKYAKsGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYDPESEQANEYREL 240

                         250       260       270
                  ....*....|....*....|....*....|...
6NZJ_A        241 ADNVQNNNKLVVPTPLPMEELEAMMVEFGIVEL 273
Cdd:TIGR01287 241 AKKIYENTEFVIPTPLTMDELEEILMKFGIMLK 273
nifH PRK13233
nitrogenase iron protein;
2-272 1.92e-155

nitrogenase iron protein;


Pssm-ID: 183905  Cd Length: 275  Bit Score: 433.86  E-value: 1.92e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         2 RQIAIYGKGGIGKSTTTQNLTAALSTM-GNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGIDLDTVLQPGFGG 80
Cdd:PRK13233   3 RKIAIYGKGGIGKSTTTQNTAAAMAYFhDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKD 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:PRK13233  83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAYTDDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGEMMAIYAAN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       161 NICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLT 239
Cdd:PRK13233 163 NICKGLVKYAEqSGVRLGGIICNSRNVDGELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKTVVEFDPDCNQAKEYKE 242

                        250       260       270
                 ....*....|....*....|....*....|...
6NZJ_A       240 LADNVQNNNKLVVPTPLPMEELEAMMVEFGIVE 272
Cdd:PRK13233 243 LARKIIENKDFVIPKPLTMDELEEMVVKYGLMD 275
F430_CfbC NF033200
Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, ...
 2-265 1.30e-150

Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, very closely related to the nitrogenase iron protein, was identified as a subunit involved in biosynthesis of coenzyme F430 in archaeal methanogens and archaeal anaerobic methanotrophs.


Pssm-ID: 380202  Cd Length: 260  Bit Score: 420.82  E-value: 1.30e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDegIDLDTVLQPGFGGI 81
Cdd:NF033200   1 KQIAIYGKGGIGKSTTVSNLAAALSEEGKKVMVIGCDPKADSTRTLMGGRRIPTILDLLRENKN--IKEEDVVFEGYGGV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANN 161
Cdd:NF033200  79 RCVESGGPEPGVGCAGRGIIVAMQLLEKLGAFMEDLDVIIYDVLGDVVCGGFAVPLREGYADEVYIVTSGEYMSLYAANN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       162 ICKGLAKFAkggARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTLA 241
Cdd:NF033200 159 ICKGIKKLK---GRLGGIICNSRNIENEEEIVEEFAERIGSRLIGFIPRSELVQKSELEAKTVIEKAPDSEQAAVYRKLA 235

                        250       260
                 ....*....|....*....|....
6NZJ_A       242 DNVQNNNKLVVPTPLPMEELEAMM 265
Cdd:NF033200 236 KKIMENTDFVIPEPLEDEELEELF 259
Fer4_NifH pfam00142
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;
2-270 1.65e-143

4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;


Pssm-ID: 395090  Cd Length: 271  Bit Score: 403.36  E-value: 1.65e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEG-DEGIDLDTVLQPGFGG 80
Cdd:pfam00142   1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLVVGCDPKADSTRLLLGGKLQPTVLDTAREKGyVEDVEVEDVVYKGYGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYtDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:pfam00142  81 VKCVESGGPEPGVGCAGRGVITAINLLEELGAY-DDLDFVLYDVLGDVVCGGFAMPIREGKAQEIYIVTSNEMMALYAAN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        161 NICKGLAKFAK-GGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLT 239
Cdd:pfam00142 160 NIAKGIQKYAKsGGVRLGGIICNSRKVDDERELIDAFAEELGTQVLHFVPRDNIVRKAELRKQTVIEYAPDSEQAQEYRE 239

                         250       260       270
                  ....*....|....*....|....*....|.
6NZJ_A        240 LADNVQNNNKLVVPTPLPMEELEAMMVEFGI 270
Cdd:pfam00142 240 LARKILENPKGTIPTPLSMDELEALLEDFGL 270
NifH-like cd02117
NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) ...
 2-266 2.31e-114

NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase, and the BchX subunit of the Chlorophyllide reductase. Members of this family use energy from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for substrate reduction


Pssm-ID: 349761  Cd Length: 266  Bit Score: 329.33  E-value: 2.31e-114
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEG-DEGIDLDTVLQPGFGG 80
Cdd:cd02117   1 ESIVVYGKGGIGKSTTASNLSAALAEGGKKVLHVGCDPKHDSTLLLTGGKVPPTIDEMLTEDGtAEELRREDLLFSGFNG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:cd02117  81 VDCVEAGGPEPGVGCGGRGIGTMLELLEEHGLLDDDYDVVIFDVLGDVVCGGFAAPLRRGFAQKVVIVVSEELMSLYAAN 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      161 NICKGLAKFAKGGARLGGIICNSRKvDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTL 240
Cdd:cd02117 161 NIVKAVENYSKNGVRLAGLVANLRD-PAGTEEIQAFAAAVGTKILAVIPRDPAVRRAELARVTVFEHDPVSPAASEFARL 239

                       250       260
                ....*....|....*....|....*..
6NZJ_A      241 ADNVQNNNKLVV-PTPLPMEELEAMMV 266
Cdd:cd02117 240 AAKIADAVPPVPgPRPLSDRELFALLG 266
PRK13230 PRK13230
nitrogenase reductase-like protein; Reviewed
 1-261 5.57e-108

nitrogenase reductase-like protein; Reviewed


Pssm-ID: 183903  Cd Length: 279  Bit Score: 314.02  E-value: 5.57e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGlNQKTVLDTLRSEGDEGIDLDTVLQPGFGG 80
Cdd:PRK13230   1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGE-KIPTVLDVLREKGIDNLGLEDIIYEGFNG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTD-DLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAA 159
Cdd:PRK13230  80 IYCVESGGPEPGYGCAGRGVITAIDLLKKLGVFEElGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       160 NNICKGLAKFA-KGGARLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYL 238
Cdd:PRK13230 160 NNICKGIKRFAkRGKSALGGIIYNGRSVIDAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYAPDSEISNIFR 239

                        250       260
                 ....*....|....*....|...
6NZJ_A       239 TLADNVQNNNKLVVPTPLPMEEL 261
Cdd:PRK13230 240 ELAEAIYENNTGTIPNPLEEEEI 262
PRK13231 PRK13231
nitrogenase reductase-like protein; Reviewed
 1-268 4.52e-103

nitrogenase reductase-like protein; Reviewed


Pssm-ID: 183904  Cd Length: 264  Bit Score: 300.95  E-value: 4.52e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         1 MRQIAIYGKGGIGKSTTTQNLTAALSTmGNNILLVGCDPKADSTRMLLGGlNQKTVLDTLRSegDEGIDLDTVLQPGFGG 80
Cdd:PRK13231   2 MKKIAIYGKGGIGKSTTVSNMAAAYSN-DHRVLVIGCDPKADTTRTLCGK-RIPTVLDTLKD--NRKPELEDIIHEGFNG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAAN 160
Cdd:PRK13231  78 ILCVESGGPEPGVGCAGRGVIVAMNLLENLGVFDEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAAN 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       161 NICKGLAKFaKGgaRLGGIICNSRKVDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTL 240
Cdd:PRK13231 158 NIARGIKKL-KG--KLGGIICNCRGIDNEVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQASVYRKL 234

                        250       260
                 ....*....|....*....|....*...
6NZJ_A       241 ADNVQNNNKLVVPTPLPMEELEAMMVEF 268
Cdd:PRK13231 235 ANNIMNNTEFSTPEPMDDEEFEEFFKSF 262
chlL PRK13185
protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
 4-261 6.76e-66

protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional


Pssm-ID: 237293  Cd Length: 270  Bit Score: 206.35  E-value: 6.76e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         4 IAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLnQKTVLDTLRSEG--DEGIDLDTVLQPGFGGI 81
Cdd:PRK13185   5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKL-VPTVIDILEEVDfhSEELRPEDFVYEGYNGV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYtDDLDYVFYDVLGDVVCGGFAMPIREgkAKEIYIVASGELMAIYAANN 161
Cdd:PRK13185  84 DCVEAGGPPAGTGCGGYVVGETVKLLKEHHLL-DDYDVILFDVLGDVVCGGFAAPLQY--ADYALIVTANDFDSIFAANR 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       162 ICKGLAKFAKG-GARLGGIICNSrkvDGERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDRESDQ----AKE 236
Cdd:PRK13185 161 IAAAIQAKAKNyKVRLAGVIANR---SAGTDLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFEMEETDPGleevQNE 237

                        250       260
                 ....*....|....*....|....*
6NZJ_A       237 YLTLADNVQNNNKLVVPTPLPMEEL 261
Cdd:PRK13185 238 YLRLAEQLLAGPEPLVPKPLKDREI 262
Bchl-like cd02032
L-subunit of protochlorophyllide reductase; This family of proteins contains BchL and ChlL. ...
 4-261 9.60e-65

L-subunit of protochlorophyllide reductase; This family of proteins contains BchL and ChlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.


Pssm-ID: 349752  Cd Length: 267  Bit Score: 203.30  E-value: 9.60e-65
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        4 IAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLnQKTVLDTLRSEG--DEGIDLDTVLQPGFGGI 81
Cdd:cd02032   3 IAVYGKGGIGKSTTSSNLSAAFAKRGKKVLQIGCDPKHDSTFTLTGFL-IPTVIDVLQSVDfhYEEVWPEDVIFTGYGGV 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYtDDLDYVFYDVLGDVVCGGFAMPIREgkAKEIYIVASGELMAIYAANN 161
Cdd:cd02032  82 DCVEAGGPPAGTGCGGYVVGETVKLLKELNAF-DEYDVILFDVLGDVVCGGFAAPLNY--ADYCLIVTANDFDSLFAANR 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      162 ICKGLAKFAKG-GARLGGIICN-SRKVDgereLLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFDrESDQAK---- 235
Cdd:cd02032 159 IAAAVREKAKTyPVRLAGIIGNrTDKTD----LIDKFVEAVPMPVLEVLPLIEDIRRSRVKGKTLFEME-ESEPELnyvc 233

                       250       260
                ....*....|....*....|....*..
6NZJ_A      236 -EYLTLADNVQNNNKLVVPTPLPMEEL 261
Cdd:cd02032 234 dEYLNIADQLLSDPEGVVPKPLPDREI 260
BchX cd02033
X-subunit of protochlorophyllide reductase; Chlorophyllide reductase converts chlorophylls ...
 4-261 2.29e-50

X-subunit of protochlorophyllide reductase; Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.


Pssm-ID: 349753  Cd Length: 329  Bit Score: 168.47  E-value: 2.29e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        4 IAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTL--RSEGDEGIDLDTVLQPGfGGI 81
Cdd:cd02033  34 IAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETStrKKLAGEEVKIGDVCFKR-GGV 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANN 161
Cdd:cd02033 113 FAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWGFDYVLLDFLGDVVCGGFGLPIARDMCQKVIVVGSNDLQSLYVANN 192

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      162 ICKGLAKFAKGGARLG--GIICNsrKVDGERElLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIdfDRESDQAKEYLT 239
Cdd:cd02033 193 VCSAVEYFRKLGGNVGvaGIVIN--KDDGTGE-AQAFAKAAGIPVLAAIPADEDIRRKSANYQIVG--RPETQWGPLFAE 267

                       250       260
                ....*....|....*....|..
6NZJ_A      240 LADNVQNNNKLvVPTPLPMEEL 261
Cdd:cd02033 268 LATNVAEAPPM-RPTPLSQDEL 288
chlL CHL00072
photochlorophyllide reductase subunit L
 3-268 9.28e-45

photochlorophyllide reductase subunit L


Pssm-ID: 177011  Cd Length: 290  Bit Score: 152.58  E-value: 9.28e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         3 QIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLnQKTVLDTLRSEgD---EGIDLDTVLQPGFG 79
Cdd:CHL00072   2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFL-IPTIIDTLQSK-DyhyEDVWPEDVIYKGYG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        80 GIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYtDDLDYVFYDVLGDVVCGGFAMPIreGKAKEIYIVASGELMAIYAA 159
Cdd:CHL00072  80 GVDCVEAGGPPAGAGCGGYVVGETVKLLKELNAF-YEYDIILFDVLGDVVCGGFAAPL--NYADYCIIITDNGFDALFAA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       160 NNICKGLAKFAKGGA-RLGGIICNSRKvdgERELLEAFAKKLGSHLIHFVPRDNIVQRAEINRKTVIDFdRESDQAKEY- 237
Cdd:CHL00072 157 NRIAASVREKARTHPlRLAGLVGNRTS---KRDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEM-VESEPSLNYv 232

                        250       260       270
                 ....*....|....*....|....*....|....*
6NZJ_A       238 ----LTLADNVQNNNKLVVPTPLPMEELEAMMVEF 268
Cdd:CHL00072 233 cdyyLNIADQLLSQPEGVVPKEVPDRELFSLLSDF 267
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 1-244 9.68e-19

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 82.98  E-value: 9.68e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLlgGLNQKTVLDTLRS--EGDEGIDlDTVLQPG 77
Cdd:COG1192   1 MKVIAVAnQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQGNLTSGL--GLDPDDLDPTLYDllLDDAPLE-DAIVPTE 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       78 FGGIKCVESGGPEPG-----VGCAGRGIItsigLLENLGAYTDDLDYVFYDV---LGDVVCGGFAMpiregkAKEIYIVA 149
Cdd:COG1192  78 IPGLDLIPANIDLAGaeielVSRPGRELR----LKRALAPLADDYDYILIDCppsLGLLTLNALAA------ADSVLIPV 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      150 SGELMAIYAANNICKGLAKFAKG---GARLGGIICNsrKVDG----ERELLEAFAKKLGSHLI-HFVPRDNIVQRAEINR 221
Cdd:COG1192 148 QPEYLSLEGLAQLLETIEEVREDlnpKLEILGILLT--MVDPrtrlSREVLEELREEFGDKVLdTVIPRSVALAEAPSAG 225

                       250       260
                ....*....|....*....|...
6NZJ_A      222 KTVIDFDRESDQAKEYLTLADNV 244
Cdd:COG1192 226 KPVFEYDPKSKGAKAYRALAEEL 248
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 16-244 1.43e-11

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 62.60  E-value: 1.43e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       16 TTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDegidLDTVLQPGFGGIKCVeSGGPEPGvgc 95
Cdd:COG0455   1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEAD----LEDAIVQGPGGLDVL-PGGSGPA--- 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       96 AGRGIITSIGLLENLGAYTDDLDYVFYDV---LGDVVCGGFAMpiregkAKEIYIVASGELMAIYAANNICKGLAKfaKG 172
Cdd:COG0455  73 ELAELDPEERLIRVLEELERFYDVVLVDTgagISDSVLLFLAA------ADEVVVVTTPEPTSITDAYALLKLLRR--RL 144

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
6NZJ_A      173 GARLGGIICN-SRKVDGERELLEAFAKKLGSHL------IHFVPRDNIVQRAEINRKTVIDFDRESDQAKEYLTLADNV 244
Cdd:COG0455 145 GVRRAGVVVNrVRSEAEARDVFERLEQVAERFLgvrlrvLGVIPEDPAVREAVRRGRPLVLAAPDSPAARAIRELAARL 223
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 4-191 1.22e-09

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 57.50  E-value: 1.22e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        4 IAIY-GKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEgdegIDLDTVLQP-GFGGI 81
Cdd:COG0489  95 IAVTsGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGE----ASLEDVIQPtEVEGL 170

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       82 KCVESGGPEPgvgcAGRGIITS---IGLLENLgayTDDLDYVFYD---VLGDV-------VCGGFampiregkakeIYIV 148
Cdd:COG0489 171 DVLPAGPLPP----NPSELLASkrlKQLLEEL---RGRYDYVIIDtppGLGVAdatllasLVDGV-----------LLVV 232

                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
6NZJ_A      149 ASGELmaiyAANNICKGLAKFAKGGARLGGIICNSRKVDGERE 191
Cdd:COG0489 233 RPGKT----ALDDVRKALEMLEKAGVPVLGVVLNMVCPKGERY 271
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 4-47 1.39e-09

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 54.85  E-value: 1.39e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
6NZJ_A        4 IAIYG-KGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRML 47
Cdd:cd02042   3 IAVANqKGGVGKTTLAVNLAAALALRGKRVLLIDLDPQGSLTSWL 47
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 2-232 1.63e-09

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 56.81  E-value: 1.63e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEgdegIDLDTVLQPGFGG 80
Cdd:cd02038   1 RIIAVTsGKGGVGKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGR----VSLEDIIVEGPEG 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       81 IkCVESGGpepgvgcAGRGIITSI------GLLENLGAYTDDLDYVFYDV---LGDVVCGGFAMpiregkAKEIYIVASG 151
Cdd:cd02038  77 L-DIIPGG-------SGMEELANLdpeqkaKLIEELSSLESNYDYLLIDTgagISRNVLDFLLA------ADEVIVVTTP 142

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      152 ELMAIYAANNICKGLAKfAKGGARLgGIICNsrKVDGERELLEAFAK---------KLGSHLIHFVPRDNIVQRAEINRK 222
Cdd:cd02038 143 EPTSITDAYALIKVLSR-RGGKKNF-RLIVN--MARSPKEGRATFERlkkvakrflDINLDFVGFIPYDQSVRRAVRSQK 218

                       250
                ....*....|
6NZJ_A      223 TVIDFDRESD 232
Cdd:cd02038 219 PFVLLFPNSK 228
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 1-65 7.06e-08

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 51.05  E-value: 7.06e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
6NZJ_A          1 MRQIAIYG-KGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQ--KTVLDTLRSEGD 65
Cdd:pfam13614   1 GKVIAIANqKGGVGKTTTSVNLAAALAKKGKKVLLIDLDPQGNATSGLGIDKNNveKTIYELLIGECN 68
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 4-224 2.78e-07

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 50.04  E-value: 2.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A          4 IAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGIDLDTVLQ--PGFGGI 81
Cdd:pfam01656   2 AIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDPQSNNSSVEGLEGDIAPALQALAEGLKGRVNLDPILLkeKSDEGG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         82 KCVESGGPEPGVGCAG-RGIITSIGLLENLGAYTDDLDYVFYD---------VLGDVVCGGFAMPIRegkaKEIYIVASG 151
Cdd:pfam01656  82 LDLIPGNIDLEKFEKElLGPRKEERLREALEALKEDYDYVIIDgapglgellRNALIAADYVIIPLE----PEVILVEDA 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
6NZJ_A        152 ELMAIYAANNickgLAKFAKGGARLGGIICNsrKVDGERE---LLEAFAK-KLGSHLIHFVPRDNIVQRAEINRKTV 224
Cdd:pfam01656 158 KRLGGVIAAL----VGGYALLGLKIIGVVLN--KVDGDNHgklLKEALEElLRGLPVLGVIPRDEAVAEAPARGLPV 228
CpaE-like cd03111
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ...
 2-239 4.74e-05

pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.


Pssm-ID: 349765 [Multi-domain]  Cd Length: 235  Bit Score: 43.42  E-value: 4.74e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        2 RQIAIYG-KGGIGKSTTTQNLTAALST-MGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGID-LDTVLQPGF 78
Cdd:cd03111   1 RVVAVVGaKGGVGASTLAVNLAQELAQrAKDKVLLIDLDLPFGDLGLYLNLRPDYDLADVIQNLDRLDRTlLDSAVTRHS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       79 GGIKCVesGGPEPGVGCAGRGIITSIGLLENLGAYTD----DLDYVFYDVLGDVVCGgfampiregkAKEIYIVASGELM 154
Cdd:cd03111  81 SGLSLL--PAPQELEDLEALGAEQVDKLLQVLRAFYDhiivDLGHFLDEVTLAVLEA----------ADEILLVTQQDLP 148

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A      155 AIYAANNICKGLAKFAKGGARLgGIICNsrKVDGEREL-LEAFAKKLGSHLIHFVPRD-NIVQRAeINRKTVIDFDRESD 232
Cdd:cd03111 149 SLRNARRLLDSLRELEGSSDRL-RLVLN--RYDKKSEIsPKDIEEALGLEVFATLPNDyKAVSES-ANTGRPLVEVAPRS 224


                ....*..
6NZJ_A      233 QAKEYLT 239
Cdd:cd03111 225 ALVRALQ 231
Mrp_NBP35 cd02037
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically ...
 4-38 8.01e-05

Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically iron-sulfur (FeS) cluster scaffolds that function to assemble nascent FeS clusters for transfer to FeS-requiring enzymes. Members include the eukaryotic nucleotide-binding protein 1 (NUBP1) which is a component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery and the archael [NiFe] hydrogenase maturation protein HypB which is required for nickel insertion into [NiFe] hydrogenase.


Pssm-ID: 349757 [Multi-domain]  Cd Length: 213  Bit Score: 42.49  E-value: 8.01e-05
                        10        20        30
                ....*....|....*....|....*....|....*.
6NZJ_A        4 IAIY-GKGGIGKSTTTQNLTAALSTMGNNILLVGCD 38
Cdd:cd02037   3 IAVLsGKGGVGKSTVAVNLALALAKKGYKVGLLDAD 38
ParA pfam10609
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ...
 4-244 8.03e-05

NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.


Pssm-ID: 431392 [Multi-domain]  Cd Length: 246  Bit Score: 42.83  E-value: 8.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A          4 IAIY-GKGGIGKSTTTQNLTAALSTMGNNILLVgcDpkADST-----RMLlgGLNQKTVLDTlrsegDEGIdldtvLQPG 77
Cdd:pfam10609   6 IAVAsGKGGVGKSTVAVNLALALARLGYKVGLL--D--ADIYgpsipRML--GLEGERPEQS-----DGGI-----IPVE 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A         78 FGGIKCVESG--GPEPGVGCAGRGIITSiGLLENLGAYTD--DLDYVFYDV---LGDV---------VCGgfampiregk 141
Cdd:pfam10609  70 AHGIKVMSIGflLPDEDDAVIWRGPMKS-GAIKQFLTDVDwgELDYLIIDLppgTGDEqltlaqllpLTG---------- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A        142 akeIYIVASGELMAIYAANnicKGLAKFAKGGARLGGIICN-SRKV---DGERELL------EAFAKKLGSHLIHFVPRD 211
Cdd:pfam10609 139 ---AVIVTTPQDVALLDVR---KAIDMFKKVNVPVLGVVENmSYFVcphCGEETYIfgkgggEKLAEELGVPFLGEIPLD 212

                         250       260       270
                  ....*....|....*....|....*....|....
6NZJ_A        212 -NIVQRAEiNRKTVIDFDRESDQAKEYLTLADNV 244
Cdd:pfam10609 213 pDIREAGD-EGKPFVLADPDSPAAKAFLKIADKV 245
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
 2-38 9.48e-05

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 40.88  E-value: 9.48e-05
                        10        20        30
                ....*....|....*....|....*....|....*...
6NZJ_A        2 RQIAIYG-KGGIGKSTTTQNLTAALSTMGNNILLVGCD 38
Cdd:cd01983   1 RVIAVTGgKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 11-91 1.04e-04

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 42.17  E-value: 1.04e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
6NZJ_A       11 GIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGidlDTVLQPGFGGIKCVESGGPE 90
Cdd:cd05387  30 GEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLSGQASLE---DVIQSTNIPNLDVLPAGTVP 106


                .
6NZJ_A       91 P 91
Cdd:cd05387 107 P 107
cellulose_yhjQ TIGR03371
cellulose synthase operon protein YhjQ; Members of this family are the YhjQ protein, found ...
 1-40 3.86e-04

cellulose synthase operon protein YhjQ; Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 274549 [Multi-domain]  Cd Length: 246  Bit Score: 40.79  E-value: 3.86e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
6NZJ_A          1 MRQIAIYG-KGGIGKSTTTQNLTAALSTMGNNILLVGCDPK 40
Cdd:TIGR03371   1 MKVIAIVSvRGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41
PHA02518 PHA02518
ParA-like protein; Provisional
 9-68 5.45e-04

ParA-like protein; Provisional


Pssm-ID: 222854 [Multi-domain]  Cd Length: 211  Bit Score: 40.22  E-value: 5.45e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
6NZJ_A         9 KGGIGKSTTTQNLTAALSTMGNNILLVGCDPkadstrmllgglnQKTVLD--TLRSEGDEGI 68
Cdd:PHA02518   9 KGGAGKTTVATNLASWLHADGHKVLLVDLDP-------------QGSSTDwaEAREEGEPLI 57
MinD cd02036
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ...
 8-38 6.98e-04

septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.


Pssm-ID: 349756 [Multi-domain]  Cd Length: 236  Bit Score: 39.88  E-value: 6.98e-04
                        10        20        30
                ....*....|....*....|....*....|.
6NZJ_A        8 GKGGIGKSTTTQNLTAALSTMGNNILLVGCD 38
Cdd:cd02036   8 GKGGVGKTTTTANLGVALAKLGKKVLLIDAD 38
CooC1 cd02034
accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in ...
 4-41 9.90e-04

accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in the incorporation of nickel into the complex active site ([Ni-4Fe-4S]) cluster of Ni,Fe-dependent carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.


Pssm-ID: 349754 [Multi-domain]  Cd Length: 249  Bit Score: 39.60  E-value: 9.90e-04
                        10        20        30
                ....*....|....*....|....*....|....*...
6NZJ_A        4 IAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKA 41
Cdd:cd02034   3 IAVAGKGGVGKTTIAALLIRYLAKKGGKVLAVDADPNS 40
CooC COG3640
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ...
 4-39 1.23e-03

CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442857 [Multi-domain]  Cd Length: 249  Bit Score: 39.38  E-value: 1.23e-03
                        10        20        30
                ....*....|....*....|....*....|....*.
6NZJ_A        4 IAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDP 39
Cdd:COG3640   3 IAVAGKGGVGKTTLSALLARYLAEKGKPVLAVDADP 38
minD CHL00175
septum-site determining protein; Validated
 8-63 1.32e-03

septum-site determining protein; Validated


Pssm-ID: 214385 [Multi-domain]  Cd Length: 281  Bit Score: 39.37  E-value: 1.32e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
6NZJ_A         8 GKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQ--KTVLDTLRSE 63
Cdd:CHL00175  23 GKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRvlYTAMDVLEGE 80
arsen_driv_ArsA TIGR04291
arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family ...
 8-56 3.79e-03

arsenical pump-driving ATPase; The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).


Pssm-ID: 275109 [Multi-domain]  Cd Length: 566  Bit Score: 38.53  E-value: 3.79e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
6NZJ_A          8 GKGGIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTV 56
Cdd:TIGR04291 328 GKGGVGKTTVAAAIAVRLANKGLDVHLTTSDPAAHLSVTLTGSLNNLQV 376
ArsA_ATPase pfam02374
Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes ...
 1-39 4.55e-03

Anion-transporting ATPase; This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.


Pssm-ID: 396792  Cd Length: 302  Bit Score: 37.71  E-value: 4.55e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
6NZJ_A          1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNNILLVGCDP 39
Cdd:pfam02374   1 MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDP 39
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
11-65 6.47e-03

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 37.82  E-value: 6.47e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
6NZJ_A        11 GIGKSTTTQNLTAALSTMGNNILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGD 65
Cdd:PRK11519 537 SIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGD 591
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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