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Conserved domains on  [gi|1243913193|pdb|5XXU|H]
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Chain H, Ribosomal protein eS7

Protein Classification

eS7 family ribosomal protein( domain architecture ID 10472486)

eS7 family ribosomal protein is a component of the small ribosomal subunit.

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_S7e pfam01251
Ribosomal protein S7e;
7-191 3.61e-87

Ribosomal protein S7e;


:

Pssm-ID: 460135  Cd Length: 182  Bit Score: 253.99  E-value: 3.61e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H          7 KIVKPQGVEPTEIENEVAKCLFDIETSSqSDLKGDVRHLVISSVKEVEVPqGRKKAFVVFVPHAVYqKTVKKIQGRLVQE 86
Cdd:pfam01251   1 KIKKPKGEEPTELEEQVAQALLDLENNS-SDLKADLRELQISSAKEVDVG-GGKKAIVIFVPVPQL-KAFHKIQQRLVRE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H         87 LEKKL-KKHVVLVAQRTMLPLDFKRKGLKV-RPRSRTLTAVQDGMLEDIVSPTEIVGKRMRVRVDNTKMLKVFLDPRDKQ 164
Cdd:pfam01251  78 LEKKFsGKHVVFVAQRRILPKPTRKSKKKQkRPRSRTLTAVHDAILEDLVYPTEIVGKRTRVRLDGSKLLKVFLDSKDRT 157
                         170       180
                  ....*....|....*....|....*..
5XXU_H        165 kdNIEDKLETFAAVYKKLTNKDAVFSF 191
Cdd:pfam01251 158 --NVEHKLDTFSAVYKKLTGKDVVFEF 182
 
Name Accession Description Interval E-value
Ribosomal_S7e pfam01251
Ribosomal protein S7e;
7-191 3.61e-87

Ribosomal protein S7e;


Pssm-ID: 460135  Cd Length: 182  Bit Score: 253.99  E-value: 3.61e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H          7 KIVKPQGVEPTEIENEVAKCLFDIETSSqSDLKGDVRHLVISSVKEVEVPqGRKKAFVVFVPHAVYqKTVKKIQGRLVQE 86
Cdd:pfam01251   1 KIKKPKGEEPTELEEQVAQALLDLENNS-SDLKADLRELQISSAKEVDVG-GGKKAIVIFVPVPQL-KAFHKIQQRLVRE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H         87 LEKKL-KKHVVLVAQRTMLPLDFKRKGLKV-RPRSRTLTAVQDGMLEDIVSPTEIVGKRMRVRVDNTKMLKVFLDPRDKQ 164
Cdd:pfam01251  78 LEKKFsGKHVVFVAQRRILPKPTRKSKKKQkRPRSRTLTAVHDAILEDLVYPTEIVGKRTRVRLDGSKLLKVFLDSKDRT 157
                         170       180
                  ....*....|....*....|....*..
5XXU_H        165 kdNIEDKLETFAAVYKKLTNKDAVFSF 191
Cdd:pfam01251 158 --NVEHKLDTFSAVYKKLTGKDVVFEF 182
PTZ00389 PTZ00389
40S ribosomal protein S7; Provisional
8-194 2.60e-84

40S ribosomal protein S7; Provisional


Pssm-ID: 185592  Cd Length: 184  Bit Score: 247.20  E-value: 2.60e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H         8 IVKPQGVEPTEIENEVAKCLFDIETSSqSDLKGDVRHLVISSVKEVEVPQGRKKAFVVFVPHAVYQkTVKKIQGRLVQEL 87
Cdd:PTZ00389   1 IKKLKKAEPSELEKQVAKALFELEASS-KDLKADLKNLKISSVKEVTVGKDKKKAVVVFVPYRMLM-IYRKIQRKLIPEL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H        88 EKKLKKHVVLVAQRTMLPLDFKRKGLKVRPRSRTLTAVQDGMLEDIVSPTEIVGKRMRVRVDNTKMLKVFLDPRDKQkdN 167
Cdd:PTZ00389  79 EKKLKKHVVIVAQRTILKKPVKNYKLKTRPRSRTLTAVHEAILEDLVYPSEIVGKRTRVRVDGSKLLKVFLDPKDRK--N 156
                        170       180
                 ....*....|....*....|....*..
5XXU_H       168 IEDKLETFAAVYKKLTNKDAVFSFPQH 194
Cdd:PTZ00389 157 VEEKLDAFSAVYKKLTGRDVVFEFPWD 183
 
Name Accession Description Interval E-value
Ribosomal_S7e pfam01251
Ribosomal protein S7e;
7-191 3.61e-87

Ribosomal protein S7e;


Pssm-ID: 460135  Cd Length: 182  Bit Score: 253.99  E-value: 3.61e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H          7 KIVKPQGVEPTEIENEVAKCLFDIETSSqSDLKGDVRHLVISSVKEVEVPqGRKKAFVVFVPHAVYqKTVKKIQGRLVQE 86
Cdd:pfam01251   1 KIKKPKGEEPTELEEQVAQALLDLENNS-SDLKADLRELQISSAKEVDVG-GGKKAIVIFVPVPQL-KAFHKIQQRLVRE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H         87 LEKKL-KKHVVLVAQRTMLPLDFKRKGLKV-RPRSRTLTAVQDGMLEDIVSPTEIVGKRMRVRVDNTKMLKVFLDPRDKQ 164
Cdd:pfam01251  78 LEKKFsGKHVVFVAQRRILPKPTRKSKKKQkRPRSRTLTAVHDAILEDLVYPTEIVGKRTRVRLDGSKLLKVFLDSKDRT 157
                         170       180
                  ....*....|....*....|....*..
5XXU_H        165 kdNIEDKLETFAAVYKKLTNKDAVFSF 191
Cdd:pfam01251 158 --NVEHKLDTFSAVYKKLTGKDVVFEF 182
PTZ00389 PTZ00389
40S ribosomal protein S7; Provisional
8-194 2.60e-84

40S ribosomal protein S7; Provisional


Pssm-ID: 185592  Cd Length: 184  Bit Score: 247.20  E-value: 2.60e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H         8 IVKPQGVEPTEIENEVAKCLFDIETSSqSDLKGDVRHLVISSVKEVEVPQGRKKAFVVFVPHAVYQkTVKKIQGRLVQEL 87
Cdd:PTZ00389   1 IKKLKKAEPSELEKQVAKALFELEASS-KDLKADLKNLKISSVKEVTVGKDKKKAVVVFVPYRMLM-IYRKIQRKLIPEL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5XXU_H        88 EKKLKKHVVLVAQRTMLPLDFKRKGLKVRPRSRTLTAVQDGMLEDIVSPTEIVGKRMRVRVDNTKMLKVFLDPRDKQkdN 167
Cdd:PTZ00389  79 EKKLKKHVVIVAQRTILKKPVKNYKLKTRPRSRTLTAVHEAILEDLVYPSEIVGKRTRVRVDGSKLLKVFLDPKDRK--N 156
                        170       180
                 ....*....|....*....|....*..
5XXU_H       168 IEDKLETFAAVYKKLTNKDAVFSFPQH 194
Cdd:PTZ00389 157 VEEKLDAFSAVYKKLTGRDVVFEFPWD 183
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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