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Conserved domains on  [gi|1237405017|pdb|5GTA|A]
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Chain A, Autoinducer 2-binding protein LsrB

Protein Classification

autoinducer 2 ABC transporter substrate-binding protein( domain architecture ID 11487778)

autoinducer 2 ABC transporter substrate-binding protein LsrB serves as the primary receptor for the import of the quorum-sensing signal autoinducer 2 (AI-2) into the cell

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15408 PRK15408
autoinducer 2 ABC transporter substrate-binding protein LsrB;
6-340 0e+00

autoinducer 2 ABC transporter substrate-binding protein LsrB;


:

Pssm-ID: 237961  Cd Length: 336  Bit Score: 664.96  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A         6 IKMIALLTAFGLASAVMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGY 85
Cdd:PRK15408   2 KKKIALVSALGIALISMTVQAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        86 DAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVT 165
Cdd:PRK15408  82 NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVT 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       166 DQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF 245
Cdd:PRK15408 162 DQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRDKVAIVGF 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       246 STPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSPNSEQGYHYEAKGNGIVLLP 325
Cdd:PRK15408 242 STPNVMRPYVKRGTVKEFGLWDVVQQGKISVYVANELLKKGKLNVGDSLDVPGIGKVEVSPNSVQGYDYEAKGNGIVLLP 321

                        330
                 ....*....|....*
5GTA_A       326 ERVIFNKDNIDKYDF 340
Cdd:PRK15408 322 ERVVFTKENIDKYDF 336
 
Name Accession Description Interval E-value
PRK15408 PRK15408
autoinducer 2 ABC transporter substrate-binding protein LsrB;
6-340 0e+00

autoinducer 2 ABC transporter substrate-binding protein LsrB;


Pssm-ID: 237961  Cd Length: 336  Bit Score: 664.96  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A         6 IKMIALLTAFGLASAVMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGY 85
Cdd:PRK15408   2 KKKIALVSALGIALISMTVQAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        86 DAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVT 165
Cdd:PRK15408  82 NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVT 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       166 DQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF 245
Cdd:PRK15408 162 DQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRDKVAIVGF 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       246 STPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSPNSEQGYHYEAKGNGIVLLP 325
Cdd:PRK15408 242 STPNVMRPYVKRGTVKEFGLWDVVQQGKISVYVANELLKKGKLNVGDSLDVPGIGKVEVSPNSVQGYDYEAKGNGIVLLP 321

                        330
                 ....*....|....*
5GTA_A       326 ERVIFNKDNIDKYDF 340
Cdd:PRK15408 322 ERVVFTKENIDKYDF 336
PBP1_LsrB_Quorum_Sensing cd20003
ligand-binding protein LsrB of ABC transporter periplasmic binding protein; Periplasmic ...
 29-336 1.25e-164

ligand-binding protein LsrB of ABC transporter periplasmic binding protein; Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.


Pssm-ID: 380658  Cd Length: 298  Bit Score: 460.98  E-value: 1.25e-164
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd20003   1 TIAMIPKLVGVPYFTAAGQGAQEAAKELGVDVTYDGPTEASVSKQVEVINNFINQGYDVIAVSANDPDALAPALKKAMKK 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVdKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIV 188
Cdd:cd20003  81 GIKVVTWDSDVNPDARDFFVNQATPEGIGKTLVDMVAEQT-GEKGKVAIVTSSPTATNQNAWIKAMKAYIAEKYPDMKIV 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      189 TTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVGFSTPNVMRPYVQRGTVKEFGLWD 267
Cdd:cd20003 160 TTQYGQEDPAKSLQVAENILKAYPDLKAIIAPDSVALPGAAEAVEQLGRtGKVAVTGLSTPNVMRPYVKDGTVKSVVLWD 239

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
5GTA_A      268 VVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSPnseqgyhyeaKGNGIVLLPERVIFNKDNID 336
Cdd:cd20003 240 VVDLGYLAVYVARALADGTLLKVGDFFVAGRLGTFTVVP----------KGNGIILLGEPLIFTKENID 298
RhaS TIGR02637
rhamnose ABC transporter, rhamnose-binding protein; This sugar-binding component of ABC ...
 30-340 1.92e-76

rhamnose ABC transporter, rhamnose-binding protein; This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.


Pssm-ID: 131685  Cd Length: 302  Bit Score: 237.07  E-value: 1.92e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A         30 IAFIPKLVGVGFFTSGGNGAQEAGKALG-IDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:TIGR02637   1 IGLVVKSLGNPFFEAANKGAEEAAKELGsVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        109 GVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDkEKAKVAFFYSSPTVTDQNQWVKEAKAKISQ-EHPGWEI 187
Cdd:TIGR02637  81 GIKVVTWDSGVAPEGRNLFLNQASADLIGRTQVQLAAEQIG-NGGEIAILSAASTATNQNAWIEIMKKELKDpKYPKVKL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        188 VTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLK-RNNLAIVGFSTPNVMRPYVQRGTVKEFGLW 266
Cdd:TIGR02637 160 VATVYGDDDAQKSYQEAQGLLKSYPNLKGIIAPTTVGIKAAAQAVSDAKlIGKVKLTGLGLPSEMAKYVKNGTVKAFALW 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
5GTA_A        267 DVVQQGKISVYVANALL-KNMPMNVGDSLDIPGIGKVTVSPNseqgyhyeakGNGIVLLPerVIFNKDNIDKYDF 340
Cdd:TIGR02637 240 NPIDLGYSAAYTAYRLSsGEITGKPGETFKAGRMGEYTIGDN----------GVAALGPP--FVFDADNIDQFSK 302
Peripla_BP_4 pfam13407
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ...
 30-285 1.53e-58

Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins. This domain recognizes fructose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 433182 [Multi-domain]  Cd Length: 259  Bit Score: 189.44  E-value: 1.53e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A         30 IAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRG 109
Cdd:pfam13407   1 IGVVPKSTGNPFFQAAEEGAEEAAKELGGEVIVVGPAEADAAEQVAQIEDAIAQGVDAIIVAPVDPTALAPVLKKAKDAG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        110 VKILTWDSDTKPECRSYYINQgTPKQLGSMLVEMAAHQVdKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVT 189
Cdd:pfam13407  81 IPVVTFDSDAPSSPRLAYVGF-DNEAAGEAAGELLAEAL-GGKGKVAILSGSPGDPNANERIDGFKKVLKEKYPGIKVVA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        190 TQFGYN-DATKSLQTAEGIIKAYPD-LDAIIAPDANALPAAAQAAENLKRNN-LAIVGFSTPNVMRPYVQRGTVKEFGLW 266
Cdd:pfam13407 159 EVEGTNwDPEKAQQQMEALLTAYPNpLDGIISPNDGMAGGAAQALEAAGLAGkVVVTGFDATPEALEAIKDGTIDATVLQ 238

                         250
                  ....*....|....*....
5GTA_A        267 DVVQQGKISVYVANALLKN 285
Cdd:pfam13407 239 DPYGQGYAAVELAAALLKG 257
RbsB COG1879
ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH ...
 8-284 1.82e-56

ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain [Carbohydrate transport and metabolism];


Pssm-ID: 441483 [Multi-domain]  Cd Length: 307  Bit Score: 185.51  E-value: 1.82e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        8 MIALLTAFGLASAVMTVQAAE--RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDgPTEPSVSGQVQLVNNFVNQGY 85
Cdd:COG1879  12 LALALAACGSAAAEAAAAAAKgkTIGFVVKTLGNPFFVAVRKGAEAAAKELGVELIVV-DAEGDAAKQISQIEDLIAQGV 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       86 DAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYINQgTPKQLGSMLVEMAAHQVdKEKAKVAFFYSSPTVT 165
Cdd:COG1879  91 DAIIVSPVDPDALAPALKKAKAAGIPVVTVDSDVDGSDRVAYVGS-DNYAAGRLAAEYLAKAL-GGKGKVAILTGSPGAP 168

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      166 DQNQWVKEAKAKISqEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVG 244
Cdd:COG1879 169 AANERTDGFKEALK-EYPGIKVVAEQYADWDREKALEVMEDLLQAHPDIDGIFAANDGMALGAAQALKAAGRkGDVKVVG 247

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
5GTA_A      245 FSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLK 284
Cdd:COG1879 248 FDGSPEALQAIKDGTIDATVAQDPYLQGYLAVDAALKLLK 287
 
Name Accession Description Interval E-value
PRK15408 PRK15408
autoinducer 2 ABC transporter substrate-binding protein LsrB;
6-340 0e+00

autoinducer 2 ABC transporter substrate-binding protein LsrB;


Pssm-ID: 237961  Cd Length: 336  Bit Score: 664.96  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A         6 IKMIALLTAFGLASAVMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGY 85
Cdd:PRK15408   2 KKKIALVSALGIALISMTVQAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        86 DAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVT 165
Cdd:PRK15408  82 NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVT 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       166 DQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF 245
Cdd:PRK15408 162 DQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRDKVAIVGF 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       246 STPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSPNSEQGYHYEAKGNGIVLLP 325
Cdd:PRK15408 242 STPNVMRPYVKRGTVKEFGLWDVVQQGKISVYVANELLKKGKLNVGDSLDVPGIGKVEVSPNSVQGYDYEAKGNGIVLLP 321

                        330
                 ....*....|....*
5GTA_A       326 ERVIFNKDNIDKYDF 340
Cdd:PRK15408 322 ERVVFTKENIDKYDF 336
PBP1_LsrB_Quorum_Sensing cd20003
ligand-binding protein LsrB of ABC transporter periplasmic binding protein; Periplasmic ...
 29-336 1.25e-164

ligand-binding protein LsrB of ABC transporter periplasmic binding protein; Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.


Pssm-ID: 380658  Cd Length: 298  Bit Score: 460.98  E-value: 1.25e-164
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd20003   1 TIAMIPKLVGVPYFTAAGQGAQEAAKELGVDVTYDGPTEASVSKQVEVINNFINQGYDVIAVSANDPDALAPALKKAMKK 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVdKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIV 188
Cdd:cd20003  81 GIKVVTWDSDVNPDARDFFVNQATPEGIGKTLVDMVAEQT-GEKGKVAIVTSSPTATNQNAWIKAMKAYIAEKYPDMKIV 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      189 TTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVGFSTPNVMRPYVQRGTVKEFGLWD 267
Cdd:cd20003 160 TTQYGQEDPAKSLQVAENILKAYPDLKAIIAPDSVALPGAAEAVEQLGRtGKVAVTGLSTPNVMRPYVKDGTVKSVVLWD 239

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
5GTA_A      268 VVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSPnseqgyhyeaKGNGIVLLPERVIFNKDNID 336
Cdd:cd20003 240 VVDLGYLAVYVARALADGTLLKVGDFFVAGRLGTFTVVP----------KGNGIILLGEPLIFTKENID 298
PBP1_LsrB_Quorum_Sensing-like cd06302
periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium ...
 29-336 8.57e-113

periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs; Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.


Pssm-ID: 380525 [Multi-domain]  Cd Length: 296  Bit Score: 329.20  E-value: 8.57e-113
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd06302   1 KIAFVPKVVGIPYFDAAEEGAKKAAKELGVEVVYTGPTQADAAQQVQIVENLIAQGVDAIAVSPNDADALAPVLKKAKDA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDkEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIV 188
Cdd:cd06302  81 GIKVITWDSDAPPSARDYFVNQADDEGLGEALVDSLAKEIG-GKGKVAILSGSLTATNLNAWIKAMKEYLKSKYPDIELV 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      189 TTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNN-LAIVGFSTPNVMRPYVQRGTVKEFGLWD 267
Cdd:cd06302 160 DTYYTDDDQQKAYTQAQNLIQAYPDLKGIIGVSTTAPPAAAQAVEEAGKTGkVAVTGIGLPNTARPYLKDGSVKEGVLWD 239

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
5GTA_A      268 VVQQGKISVYVANALLKNMpMNVGDSLDIPGIGKVTVSPNseqgyhyeakgNGIVLLPERVIFNKDNID 336
Cdd:cd06302 240 PAKLGYLTVYAAYQLLKGK-GFTEDSDDVGTGGKVKVDVA-----------GGEILLGPPLVFTKDNVD 296
PBP1_ABC_rhamnose cd20000
rhamnose ABC transporter substrate-binding protein; Rhamnose ABC transporter substrate-binding ...
 29-336 7.40e-80

rhamnose ABC transporter substrate-binding protein; Rhamnose ABC transporter substrate-binding protein similar to periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.


Pssm-ID: 380655  Cd Length: 298  Bit Score: 245.63  E-value: 7.40e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd20000   1 RIAFLPKSLGNPYFDAARDGAKEAAKELGGELIFVGPTTATAEAQIPFINTLIQQGVDAIAISANDPDALAPALKKARAA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDkEKAKVAFFYSSPTVTDQNQWVKEAKAKI-SQEHPGWEI 187
Cdd:cd20000  81 GIKVVTFDSDVAPEARDLFVNQADADGIGRAQVDMMAELIG-GEGEFAILSATPTATNQNAWIDAMKKELaSPEYAGMKL 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      188 VTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLK-RNNLAIVGFSTPNVMRPYVQRGTVKEFGLW 266
Cdd:cd20000 160 VKVAYGDDDAQKSYQEAEALLQAYPDLKGIIAPTTVGIAAAARALEDSGlKGKVKVTGLGLPSEMAKYVKDGTVPAFALW 239

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
5GTA_A      267 DVVQQGKISVYVANALLK-NMPMNVGDSLDIPGIGKVTVSPnseqgyhyeakgNGIVLLPERVIFNKDNID 336
Cdd:cd20000 240 NPIDLGYLAAYAAAALAQgEITGKEGETFTAGRLGEYTVGE------------GGEVVLGPPFVFTADNID 298
RhaS TIGR02637
rhamnose ABC transporter, rhamnose-binding protein; This sugar-binding component of ABC ...
 30-340 1.92e-76

rhamnose ABC transporter, rhamnose-binding protein; This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.


Pssm-ID: 131685  Cd Length: 302  Bit Score: 237.07  E-value: 1.92e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A         30 IAFIPKLVGVGFFTSGGNGAQEAGKALG-IDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:TIGR02637   1 IGLVVKSLGNPFFEAANKGAEEAAKELGsVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        109 GVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDkEKAKVAFFYSSPTVTDQNQWVKEAKAKISQ-EHPGWEI 187
Cdd:TIGR02637  81 GIKVVTWDSGVAPEGRNLFLNQASADLIGRTQVQLAAEQIG-NGGEIAILSAASTATNQNAWIEIMKKELKDpKYPKVKL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        188 VTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLK-RNNLAIVGFSTPNVMRPYVQRGTVKEFGLW 266
Cdd:TIGR02637 160 VATVYGDDDAQKSYQEAQGLLKSYPNLKGIIAPTTVGIKAAAQAVSDAKlIGKVKLTGLGLPSEMAKYVKNGTVKAFALW 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
5GTA_A        267 DVVQQGKISVYVANALL-KNMPMNVGDSLDIPGIGKVTVSPNseqgyhyeakGNGIVLLPerVIFNKDNIDKYDF 340
Cdd:TIGR02637 240 NPIDLGYSAAYTAYRLSsGEITGKPGETFKAGRMGEYTIGDN----------GVAALGPP--FVFDADNIDQFSK 302
Peripla_BP_4 pfam13407
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ...
 30-285 1.53e-58

Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins. This domain recognizes fructose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 433182 [Multi-domain]  Cd Length: 259  Bit Score: 189.44  E-value: 1.53e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A         30 IAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRG 109
Cdd:pfam13407   1 IGVVPKSTGNPFFQAAEEGAEEAAKELGGEVIVVGPAEADAAEQVAQIEDAIAQGVDAIIVAPVDPTALAPVLKKAKDAG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        110 VKILTWDSDTKPECRSYYINQgTPKQLGSMLVEMAAHQVdKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVT 189
Cdd:pfam13407  81 IPVVTFDSDAPSSPRLAYVGF-DNEAAGEAAGELLAEAL-GGKGKVAILSGSPGDPNANERIDGFKKVLKEKYPGIKVVA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        190 TQFGYN-DATKSLQTAEGIIKAYPD-LDAIIAPDANALPAAAQAAENLKRNN-LAIVGFSTPNVMRPYVQRGTVKEFGLW 266
Cdd:pfam13407 159 EVEGTNwDPEKAQQQMEALLTAYPNpLDGIISPNDGMAGGAAQALEAAGLAGkVVVTGFDATPEALEAIKDGTIDATVLQ 238

                         250
                  ....*....|....*....
5GTA_A        267 DVVQQGKISVYVANALLKN 285
Cdd:pfam13407 239 DPYGQGYAAVELAAALLKG 257
RbsB COG1879
ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH ...
 8-284 1.82e-56

ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain [Carbohydrate transport and metabolism];


Pssm-ID: 441483 [Multi-domain]  Cd Length: 307  Bit Score: 185.51  E-value: 1.82e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        8 MIALLTAFGLASAVMTVQAAE--RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDgPTEPSVSGQVQLVNNFVNQGY 85
Cdd:COG1879  12 LALALAACGSAAAEAAAAAAKgkTIGFVVKTLGNPFFVAVRKGAEAAAKELGVELIVV-DAEGDAAKQISQIEDLIAQGV 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       86 DAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYINQgTPKQLGSMLVEMAAHQVdKEKAKVAFFYSSPTVT 165
Cdd:COG1879  91 DAIIVSPVDPDALAPALKKAKAAGIPVVTVDSDVDGSDRVAYVGS-DNYAAGRLAAEYLAKAL-GGKGKVAILTGSPGAP 168

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      166 DQNQWVKEAKAKISqEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVG 244
Cdd:COG1879 169 AANERTDGFKEALK-EYPGIKVVAEQYADWDREKALEVMEDLLQAHPDIDGIFAANDGMALGAAQALKAAGRkGDVKVVG 247

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
5GTA_A      245 FSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLK 284
Cdd:COG1879 248 FDGSPEALQAIKDGTIDATVAQDPYLQGYLAVDAALKLLK 287
PBP1_ABC_sugar_binding-like cd01536
periplasmic sugar-binding domain of active transport systems that are members of the type 1 ...
 29-284 3.99e-43

periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily; Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.


Pssm-ID: 380478 [Multi-domain]  Cd Length: 268  Bit Score: 150.02  E-value: 3.99e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPtEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd01536   1 KIGVVVKDLTNPFWVAVKKGAEAAAKELGVELVVLDA-QGDVAKQISQIEDLIAQGVDAIIIAPVDSEALVPAVKKANAA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSD-TKPECRSYYINQGtPKQLGSMLVEMAAHQVDKeKAKVAFFYSSPTVTDQNQWVKEAKAKIsQEHPGWEI 187
Cdd:cd01536  80 GIPVVAVDTDiDGGGDVVAFVGTD-NYEAGKLAGEYLAEALGG-KGKVAILEGPPGSSTAIDRTKGFKEAL-KKYPDIEI 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      188 VTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVGFSTPNVMRPYVQRGTVKEFGLW 266
Cdd:cd01536 157 VAEQPANWDRAKALTVTENLLQANPDIDAVFAANDDMALGAAEALKAAGRtGDIKIVGVDGTPEALKAIKDGELDATVAQ 236

                       250
                ....*....|....*...
5GTA_A      267 DVVQQGKISVYVANALLK 284
Cdd:cd01536 237 DPYLQGYLAVEAAVKLLN 254
PBP1_LsrB_Quorum_Sensing-like cd20002
ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein; ...
 30-336 1.20e-39

ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein; Ligand-binding protein LsrB-like of a transport system, similar to periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.


Pssm-ID: 380657  Cd Length: 295  Bit Score: 141.69  E-value: 1.20e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       30 IAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRG 109
Cdd:cd20002   2 IVTVVKLAGIPWFNRMEQGVKKAGKEFGVNAYQVGPADADPAQQVRIIEDLIAQGVDAILVVPNDAKVLEPVFKKAREKG 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      110 VKILTWDSDTKPEcRSYYINQGTPKQLGSMLVEMAAhQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVT 189
Cdd:cd20002  82 IVVITHESPGQKG-ADWDVELIDNEKFGEAQMELLA-KEMGGKGEYAIFVGSLTVPLHNLWADAAVEYQKEKYPNMKQVT 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      190 TQF-GYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNN-LAIVGFSTPNVMRPYVQRGTVKEFGLWD 267
Cdd:cd20002 160 DRIpGGEDVDVSRQTTLELLKAYPDLKGIISFGSLGPIGAGQALREKGLKGkVAVVGTVIPSQAAAYLKEGSITEGYLWD 239

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
5GTA_A      268 VVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSpnseqgyhyeakgNGIVLLPERVIFNKDNID 336
Cdd:cd20002 240 PADAGYAMVYIAKMLLDGKRKEIGDGFEIPGKGTPDID-------------GNVIIFDAPLEITKENAD 295
PBP1_tmGBP cd06314
periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and ...
 29-286 1.61e-39

periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs; Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are members of the type 1 periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).


Pssm-ID: 380537 [Multi-domain]  Cd Length: 271  Bit Score: 140.41  E-value: 1.61e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd06314   1 TFALVPKGLNNPFWDLAEAGAEKAAKELGVNVEFVGPQKSDAAEQVQLIEDLIARGVDGIAISPNDPEAVTPVINKAADK 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSDTKPECRSYYInqGTP-KQLGSMLVEMAAhQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKIsQEHPGWEI 187
Cdd:cd06314  81 GIPVITFDSDAPDSKRLAYI--GTDnYEAGREAGELMK-KALPGGGKVAIITGGLGADNLNERIQGFKDAL-KGSPGIEI 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      188 VTTQFGYNDATKSLQTAEGIIKAYPDLDAII------APdanalPAAAQAAENLKRNNLAIVGFSTPNVMRPYVQRGTVK 261
Cdd:cd06314 157 VDPLSDNDDIAKAVQNVEDILKANPDLDAIFgvgaynGP-----AIAAALKDAGKVGKVKIVGFDTLPETLQGIKDGVIA 231

                       250       260
                ....*....|....*....|....*....
5GTA_A      262 efGLwdVVQQ----GKISVYVANALLKNM 286
Cdd:cd06314 232 --AT--VGQRpyemGYLSVKLLYKLLKGG 256
PBP1_LsrB_Quorum_Sensing-like cd20001
ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein; ...
 29-336 5.79e-36

ligand-binding protein LsrB-like of ABC transporter periplasmic binding protein; Ligand-binding protein LsrB-like of a transport system, similar to periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type 1 periplasmic binding protein superfamily. LsrB, which is part of the ABC transporter complex LsrABCD, binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding protein in interspecies signaling.


Pssm-ID: 380656  Cd Length: 296  Bit Score: 131.63  E-value: 5.79e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd20001   1 TIAVVVKVTGIAWFDRMETGVEQFAKDTGVNVYQIGPATADAAQQVQIIEDLIAQGVDAICVVPNDPEALEPVLKKARDA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSDTKPECrSYYINQGTPKQLGSMLVEMAAHQVdKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIV 188
Cdd:cd20001  81 GIVVITHEASNLKNV-DYDVEAFDNAAYGAFIMDKLAEAM-GGKGKYVTFVGSLTSTSHMEWANAAVAYQKANYPDMLLV 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      189 T-TQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRN-NLAIVGFSTPNVMRPYVQRGTVKEFGLW 266
Cdd:cd20001 159 TdRVETNDDSETAYEKAKELLKTYPDLKGIVGCSSSDVPGAARAVEELGLQgKIAVVGTGLPSVAGEYLEDGTIDYIQFW 238

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      267 DVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVspnSEQGYHYeakGNGIvllperVIFNKDNID 336
Cdd:cd20001 239 DPADAGYAMNALAVMVLEGEKITDGTDLGVPGYEKVTV---GKGKVLY---GNAW------LIVTKDNVD 296
PBP1_ABC_sugar_binding-like cd20008
monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic ...
 29-221 1.08e-26

monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380663 [Multi-domain]  Cd Length: 277  Bit Score: 106.54  E-value: 1.08e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGP-TEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd20008   1 KIAVIVKDTDSEYWQTVLKGAEKAAKELGVEVTFLGPaTEADIAGQVNLVENAISRKPDAIVLAPNDTAALVPAVEAADA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      108 rGVKILTWDSDTKPEcrsYYI------NQGTPKQLGSMLVEMAAHQvDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQE 181
Cdd:cd20008  81 -GIPVVLVDSGANTD---DYDaflatdNVAAGALAADELAELLKAS-GGGKGKVAIISFQAGSQTLVDREEGFRDYIKEK 155

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
5GTA_A      182 HPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPD 221
Cdd:cd20008 156 YPDIEIVDVQYSDGDIAKALNQTTDLLTANPDLVGIFGAN 195
PBP1_ABC_sugar_binding-like cd20007
monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic ...
 29-219 2.10e-26

monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380662 [Multi-domain]  Cd Length: 271  Bit Score: 105.78  E-value: 2.10e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd20007   1 TIALVPGVTGDPFYITMQCGAEAAAKELGVELDVQGPPTFDPTLQTPIVNAVIAKKPDALLIAPTDPQALIAPLKRAADA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSD-TKPECRSYYInQGTPKQLGsmlvEMAAHQVDK---EKAKVAFFYSSPTVTDQNQWVKEAKAKIsQEHPG 184
Cdd:cd20007  81 GIKVVTVDTTlGDPSFVLSQI-ASDNVAGG----ALAAEALAEligGKGKVLVINSTPGVSTTDARVKGFAEEM-KKYPG 154

                       170       180       190
                ....*....|....*....|....*....|....*
5GTA_A      185 WEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIA 219
Cdd:cd20007 155 IKVLGVQYSENDPAKAASIVAAALQANPDLAGIFG 189
PBP1_ABC_sugar_binding-like cd20004
monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic ...
 29-287 2.34e-25

monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380659 [Multi-domain]  Cd Length: 273  Bit Score: 102.70  E-value: 2.34e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGP-TEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd20004   1 CIAVIPKGTTHDFWKSVKAGAEKAAQELGVEIYWRGPsREDDVEAQIQIIEYFIDQGVDGIVLAPLDRKALVAPVERARA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      108 RGVKILTWDSDTKPECRSYYInqGTPKQLGSMLvemAAHQVDKE---KAKVAFF-YS--SPTVTDQNQWVKEAKAKISqe 181
Cdd:cd20004  81 QGIPVVIIDSDLGGDAVISFV--ATDNYAAGRL---AAKRMAKLlngKGKVALLrLAkgSASTTDRERGFLEALKKLA-- 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      182 hPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAI-VGFSTPNVMRPYVQRGTV 260
Cdd:cd20004 154 -PGLKVVDDQYAGGTVGEARSSAENLLNQYPDVDGIFTPNESTTIGALRALRRLGLAGKVKfIGFDASDLLLDALRAGEI 232

                       250       260       270
                ....*....|....*....|....*....|.
5GTA_A      261 keFGLwdVVQQ----GKISVYVANALLKNMP 287
Cdd:cd20004 233 --SAL--VVQDpyrmGYLGVKTAVAALRGKP 259
PBP1_ABC_sugar_binding-like cd20005
monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic ...
 29-287 1.91e-24

monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380660 [Multi-domain]  Cd Length: 274  Bit Score: 100.40  E-value: 1.91e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGP-TEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd20005   1 YIAVISKGFQHQFWKAVKKGAEQAAKELGVKITFEGPdTESDVDKQIEMLDNAIAKKPDAIALAALDTNALLPQLEKAKE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      108 RGVKILTWDSDTkpECRSYYINQGTP-KQLGSMLVEMAAHQVDkEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWE 186
Cdd:cd20005  81 KGIPVVTFDSGV--PSDLPLATVATDnYAAGALAADHLAELIG-GKGKVAIVAHDATSETGIDRRDGFKDEIKEKYPDIK 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      187 IVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVGFSTPNVMRPYVQRGTVKEFGL 265
Cdd:cd20005 158 VVNVQYGVGDHAKAADIAKAILQANPDLKGIYATNEGAAIGVANALKEMGKlGKIKVVGFDSGEAQIDAIKNGVIAGSVT 237

                       250       260
                ....*....|....*....|..
5GTA_A      266 WDVVQQGKISVYVANALLKNMP 287
Cdd:cd20005 238 QNPYGMGYKTVKAAVKALKGEE 259
PBP1_ABC_sugar_binding-like cd20006
monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic ...
 29-285 6.08e-24

monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380661 [Multi-domain]  Cd Length: 274  Bit Score: 98.82  E-value: 6.08e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVG--FFTSGGNGAQEAGKALGIDVTYDGPT-EPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 105
Cdd:cd20006   1 KIALILKSSDPNsdFWQTVKSGAEAAAKEYGVDLEFLGPEsEEDIDGQIELIEEAIAQKPDAIVLAASDYDRLVEAVERA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      106 MQRGVKILTWDSDTKPECRSYYInqGTPK-QLGSMLVEMAAHQVdKEKAKVAFFYSSPTVTDQNQWVKEAKAKISqEHPG 184
Cdd:cd20006  81 KKAGIPVITIDSPVNSKKADSFV--ATDNyEAGKKAGEKLASLL-GEKGKVAIVSFVKGSSTAIEREEGFKQALA-EYPN 156

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      185 WEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNN-LAIVGFSTPNVMRPYVQRGTVKEF 263
Cdd:cd20006 157 IKIVETEYCDSDEEKAYEITKELLSKYPDINGIVALNEQSTLGAARALKELGLGGkVKVVGFDSSVEEIQLLEEGIIDAL 236

                       250       260
                ....*....|....*....|....*.
5GTA_A      264 glwdVVQQ----GKISVYVANALLKN 285
Cdd:cd20006 237 ----VVQNpfnmGYLSVQAAVDLLNG 258
PBP1_ABC_sugar_binding-like cd19969
monosaccharide ABC transporter substrate binding protein; Periplasmic sugar-binding domain of ...
 32-290 5.89e-23

monosaccharide ABC transporter substrate binding protein; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380624 [Multi-domain]  Cd Length: 278  Bit Score: 96.25  E-value: 5.89e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       32 FIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVK 111
Cdd:cd19969   4 MVTFKSGHPYWDDVKEGFEDAGAELGVKTEYTGPATADVNEQITAIEQAIAKNPDGIAVSAIDPEALTPTINKAVDAGIP 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      112 ILTWDSDTKPECRSYYINQGTPKQlGSMLVEMAAHQVDkEKAKVAFFYSSPTvTDQNQWVKEAKAKIsQEHPGWEIVTTQ 191
Cdd:cd19969  84 VVTFDSDAPESKRISYVGTDNYEA-GYAAAEKLAELLG-GKGKVAVLTGPGQ-PNHEERVEGFKEAF-AEYPGIEVVAVG 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      192 FGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALP-AAAQAAENLKRNNLAIVGFSTPNVMRPYVQRGTV--------KE 262
Cdd:cd19969 160 DDNDDPEKAAQNTSALLQAHPDLVGIFGVDASGGVgAAQAVREAGKTGKVKIVAFDDDPETLDLIKDGVIdasiaqrpWM 239

                       250       260       270
                ....*....|....*....|....*....|...
5GTA_A      263 FGLWDVV-----QQGKISVYVANALLKNMPMNV 290
Cdd:cd19969 240 MGYWSLQflydlANGLVKDAWQTAGVNPLPPYV 272
PBP1_allose_binding cd06320
periplasmic allose-binding domain of bacterial transport systems that function as a primary ...
 29-219 1.19e-22

periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis; Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.


Pssm-ID: 380543 [Multi-domain]  Cd Length: 283  Bit Score: 95.79  E-value: 1.19e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD-GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd06320   1 KIGVVLKTLSNPFWVAMKDGIEAEAKKLGVKVDVQaAPSETDTQGQLNLLETMLNKGYDAILVSPISDTNLIPPIEKANK 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      108 RGVKILTWDSDTKPECRSYYINQGTP------KQLGSMLVEMAAHQVDKeKAKVAFFYSSPTVTDQNQWVKEAKAKIsQE 181
Cdd:cd06320  81 KGIPVINLDDAVDADALKKAGGKVTSfigtdnVAAGALAAEYIAEKLPG-GGKVAIIEGLPGNAAAEARTKGFKETF-KK 158

                       170       180       190
                ....*....|....*....|....*....|....*...
5GTA_A      182 HPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIA 219
Cdd:cd06320 159 APGLKLVASQPADWDRTKALDAATAILQAHPDLKGIYA 196
PBP1_ABC_sugar_binding-like cd06317
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic ...
 29-219 1.37e-22

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380540 [Multi-domain]  Cd Length: 281  Bit Score: 95.52  E-value: 1.37e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSvSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd06317   1 TIALVQINQQAQFFNQINQGAQAAAKDLGVDLVVFNANDDP-SKQNTAVDNYIARGVDAIILDAIDVNGSIPAIKRASEA 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTWDSDTKPECRSYYINqGTPKQLGSMLVEMAAHQVDKE---KAKVA---FFYSSPTVTDQNQWVKEAKAKisqeh 182
Cdd:cd06317  80 GIPVIAYDAVIPSDFQAAQVG-VDNLEGGKEIGKYAADYIKAElggQAKIGvvgALSSLIQNQRQKGFEEALKAN----- 153

                       170       180       190
                ....*....|....*....|....*....|....*..
5GTA_A      183 PGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIA 219
Cdd:cd06317 154 PGVEIVATVDGQNVQEKALSAAENLLTANPDLDAIYA 190
PBP1_ABC_sugar_binding-like cd06310
monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic ...
 29-284 2.27e-21

monosaccharide ABC transporter substrate-binding protein such as CUT2; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380533 [Multi-domain]  Cd Length: 272  Bit Score: 92.02  E-value: 2.27e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGP-TEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd06310   1 KIGVVLKGTTSAFWRTVREGAEAAAKDLGVKIIFVGPeSEEDVAGQNSLLEELINKKPDAIVVAPLDSEDLVDPLKDAKD 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      108 RGVKILTWDSDTKPECRSYYInqGTPK-QLGSMLVEMAAHQVDKeKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWE 186
Cdd:cd06310  81 KGIPVIVIDSGIKGDAYLSYI--ATDNyAAGRLAAQKLAEALGG-KGKVAVLSLTAGNSTTDQREEGFKEYLKKHPGGIK 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      187 IVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLK-RNNLAIVGFSTPNVMRPYVQRGTVKefGL 265
Cdd:cd06310 158 VLASQYAGSDYAKAANETEDLLGKYPDIDGIFATNEITALGAAVAIKSRKlSGQIKIVGFDSQEELLDALKNGKID--AL 235

                       250       260
                ....*....|....*....|...
5GTA_A      266 wdVVQQ----GKISVYVANALLK 284
Cdd:cd06310 236 --VVQNpyeiGYEGIKLALKLLK 256
PBP1_galactofuranose_YtfQ-like cd06309
periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems; ...
 40-219 5.95e-19

periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems; Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.


Pssm-ID: 380532 [Multi-domain]  Cd Length: 285  Bit Score: 85.35  E-value: 5.95e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       40 GFFTSGGNGAQEAGKALGIDVTYDgPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 119
Cdd:cd06309  12 PWRVANTKSIKEAAKKRGYELVYT-DANQDQEKQINDIRDLIAQGVDAILISPIDATGWDPVLKEAKDAGIPVILVDRTI 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      120 KPECRSYYINQGTP--KQLGSMLVEMAAHQVDKEKAKVAFF---YSSPTVTDQNQWVKEAKAKisqeHPGWEIVTTQFGY 194
Cdd:cd06309  91 DGEDGSLYVTFIGSdfVEEGRRAAEWLVKNYKGGKGNVVELqgtAGSSVAIDRSKGFREVIKK----HPNIKIVASQSGN 166

                       170       180
                ....*....|....*....|....*.
5GTA_A      195 NDATKSLQTAEGIIKAYP-DLDAIIA 219
Cdd:cd06309 167 FTREKGQKVMENLLQAGPgDIDVIYA 192
PBP1_ABC_sugar_binding-like cd06322
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; This group ...
 41-219 6.07e-19

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380545 [Multi-domain]  Cd Length: 270  Bit Score: 85.02  E-value: 6.07e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGIDVTYDGPtEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTK 120
Cdd:cd06322  13 FFVDIKDAMKKEAAELGVKVVVADA-NGDLAKQLSQIEDFIQQGVDAIILAPVDSGGIVPAIEAANEAGIPVFTVDVKAD 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      121 PECRSYYInqGTPKQLGSMLV-EMAAHQVDKEKAKVAFFySSPTVTDQNQWVKEAKAKISQeHPGWEIVTTQFGYNDATK 199
Cdd:cd06322  92 GAKVVTHV--GTDNYAGGKLAgEYALKALLGGGGKIAII-DYPEVESVVLRVNGFKEAIKK-YPNIEIVAEQPGDGRREE 167

                       170       180
                ....*....|....*....|
5GTA_A      200 SLQTAEGIIKAYPDLDAIIA 219
Cdd:cd06322 168 ALAATEDMLQANPDLDGIFA 187
PBP1_ribose_binding cd06323
periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose ...
 41-284 2.16e-17

periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs; Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis D-ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group belong to the type 1 periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.


Pssm-ID: 380546 [Multi-domain]  Cd Length: 268  Bit Score: 80.80  E-value: 2.16e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGIDVT-YDGPTEPSVsgQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 119
Cdd:cd06323  13 FFVSLKDGAQAEAKELGVELVvLDAQNDPAK--QLSQVEDLIVRKVDALLINPTDSDAVSPAVEEANEAGIPVITVDRSV 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      120 KPECRSYYI---NQgtpkQLGSMLVEMAAHQVdKEKAKVAFFYSSPTVT---DQNQWVKEAKAKisqeHPGWEIVTTQFG 193
Cdd:cd06323  91 TGGKVVSHIasdNV----AGGEMAAEYIAKKL-GGKGKVVELQGIPGTSaarERGKGFHNAIAK----YPKINVVASQTA 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      194 YNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF-STPNVMRpyvqrgTVKEFGLWDVVQQ- 271
Cdd:cd06323 162 DFDRTKGLNVMENLLQAHPDIDAVFAHNDEMALGAIQALKAAGRKDVIVVGFdGTPDAVK------AVKDGKLAATVAQq 235

                       250
                ....*....|....*..
5GTA_A      272 ----GKISVYVANALLK 284
Cdd:cd06323 236 peemGAKAVETADKYLK 252
PBP1_TorT-like cd06306
TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor ...
 48-299 1.41e-16

TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria; TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type 1 periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.


Pssm-ID: 380529 [Multi-domain]  Cd Length: 269  Bit Score: 78.39  E-value: 1.41e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       48 GAQEAGKALGIDVT-YDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTkpecRSY 126
Cdd:cd06306  20 GIVDEAKRLGVKLTvYEAGGYTNLSKQISQLEDCVASGADAILLGAISFDGLDPKVAEAAAAGIPVIDLVNGI----DSP 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      127 YIN---QGTPKQLGSMLVEMAAHQVDKEKAKVAFFySSPtvtdQNQ-WVKEAKA--KISQEHPGWEIVTTQFGYNDATKS 200
Cdd:cd06306  96 KVAarvLVDFYDMGYLAGEYLVEHHPGKPVKVAWF-PGP----AGAgWAEDREKgfKEALAGSNVEIVATKYGDTGKAVQ 170

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      201 LQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGFS-TPNVMRpYVQRGTVKEFGLWDVVQQGKISVYVA 279
Cdd:cd06306 171 LNLVEDALQAHPDIDYIVGNAVAAEAAVGALREAGLTGKVKVVSTYlTPGVYR-GIKRGKILAAPSDQPVLQGRIAVDQA 249

                       250       260
                ....*....|....*....|
5GTA_A      280 NALLKNMPMNVGDSLDIPGI 299
Cdd:cd06306 250 VRALEGKPVPKHVGPPILVV 269
PBP1_ABC_sugar_binding-like cd19996
monosaccharide ABC transporter substrate binding protein such as CUT2; Periplasmic ...
 69-217 3.29e-16

monosaccharide ABC transporter substrate binding protein such as CUT2; Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.


Pssm-ID: 380651 [Multi-domain]  Cd Length: 302  Bit Score: 77.67  E-value: 3.29e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       69 SVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSdtKPECRSY--YINQGtPKQLGSMLVEMAAH 146
Cdd:cd19996  43 DTQKQIADIQDLIAQGVDAIIVSPNSPTALLPAIEKAAAAGIPVVLFDS--GVGSDKYtaFVGVD-DAAFGRVGAEWLVK 119

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
5GTA_A      147 QVdKEKAKVAFFYSSPTVTDQNQWVKEAKaKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAI 217
Cdd:cd19996 120 QL-GGKGNIIALRGIAGVSVSEDRWAGAK-EVFKEYPGIKIVGEVYADWDYAKAKQAVESLLAAYPDIDGV 188
PBP1_methylthioribose_binding-like cd06305
similar to methylthioribose-binding protein of ABC-type transport systems that belong to a ...
 29-220 6.44e-16

similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily; Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.


Pssm-ID: 380528 [Multi-domain]  Cd Length: 273  Bit Score: 76.57  E-value: 6.44e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIpKLVGVGFFTS-GGNGAQEAGKALGIDV-TYDGptEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAM 106
Cdd:cd06305   1 TIAVV-RNGTSGDWDQqALQGAVAEAEKLGGTViVFDA--NGDDARMADQIQQAITQKVDAIIISHGDADALDPKLKKAL 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      107 QRGVKILTWDSDTKPecrsYYINQGTpkQLGSMLVEMAAHQVDKE---KAKVA---FFYSSPTVTDQNQWVKEAKakisq 180
Cdd:cd06305  78 DAGIPVVTFDTDSQV----PGVNNIT--QDDYALGTLSLGQLVKDlngEGNIAvfnVFGVPPLDKRYDIYKAVLK----- 146

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
5GTA_A      181 EHPGWEIVTTQFGYNDATKSLQTA---EGIIKAYPD--LDAIIAP 220
Cdd:cd06305 147 ANPGIKKIVAELGDVTPNTAADAQtqvEALLKKYPEggIDAIWAA 191
PBP1_ABC_sugar_binding-like cd06300
periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are ...
 70-219 2.38e-15

periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily; Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.


Pssm-ID: 380523 [Multi-domain]  Cd Length: 302  Bit Score: 75.44  E-value: 2.38e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       70 VSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSD-TKPECRSYYINQgtpKQLGSMLVEMAAHQV 148
Cdd:cd06300  46 ATEQIAQIRNLIDQGVDAIIINPSSPTALNAVIEQAADAGIPVVAFDGAvTSPDAYNVSNDQ---VEWGRLGAKWLFEAL 122

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
5GTA_A      149 dKEKAKVAFFY---SSPTVTDQNQWVKEAKAkisqEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIA 219
Cdd:cd06300 123 -GGKGNVLVVRgiaGAPASADRHAGVKEALA----EYPGIKVVGEVFGGWDEATAQTAMLDFLATHPQVDGVWT 191
PBP1_ABC_ThpA_XypA cd06313
periplasmic sugar-binding proteins (ThpA and XypA) of ABC-type transport systems; This group ...
 29-284 3.09e-15

periplasmic sugar-binding proteins (ThpA and XypA) of ABC-type transport systems; This group includes periplasmic D-threitol-binding protein ThpA and xylitol/L-sorbitol-binding protein XypA, which are part of sugar ABC-type transport systems. Both ThpA and XypA share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.


Pssm-ID: 380536 [Multi-domain]  Cd Length: 277  Bit Score: 74.61  E-value: 3.09e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVT-YDGptEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd06313   1 KIGFTVYGLSSEFITNLVEAMKAVAKELNVDLVvLDG--NGDVSTQINQVDTLIAQGVDAIIVVPVDADALAPAVEKAKE 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      108 RGVKILTWDSDTKPECRSYYINQgTPKQLGSMLVEMAAHQVDkEKAKVAFFY----SSPTVTDqnqwvKEAKAKISQEHP 183
Cdd:cd06313  79 AGIPLVGVNALIENEDLTAYVGS-DDVVAGELEGQAVADRLG-GKGNVVILEgpigQSAQIDR-----GKGIENVLKKYP 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      184 GWEIVTTQFGYNDATKSLQTAEGIIKAYPD-LDAIIAPDANALPAAAQAAENLKRNNLAIVGFSTPNVMRPYVQRGTVKE 262
Cdd:cd06313 152 DIKVLAEQTANWSRDEAMSLMENWLQAYGDeIDGIIAQNDDMALGALQAVKAAGRDDIPVVGIDGIEDALQAVKSGELIA 231

                       250       260
                ....*....|....*....|..
5GTA_A      263 FGLWDVVQQGKISVYVANALLK 284
Cdd:cd06313 232 TVLQDAEAQGKGAVEVAVDAVK 253
PBP1_ABC_sugar_binding-like cd19970
monosaccharide ABC transporter substrate-binding protein; Periplasmic sugar-binding domain of ...
 29-288 4.90e-15

monosaccharide ABC transporter substrate-binding protein; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380625 [Multi-domain]  Cd Length: 275  Bit Score: 74.21  E-value: 4.90e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGK-ALGID-VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAM 106
Cdd:cd19970   1 KVALVMKSLANEFFIEMEKGARKHAKeANGYElLVKGIKQETDIEQQIAIVENLIAQKVDAIVIAPADSKALVPVLKKAV 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      107 QRGVKILTWDS--DTKpECRSYYIN---QGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQwvKEAKAKISQE 181
Cdd:cd19970  81 DAGIAVINIDNrlDAD-ALKEGGINvpfVGPDNRQGAYLAGDYLAKKLGKGGKVAIIEGIPGADNAQQ--RKAGFLKAFE 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      182 HPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLKRNNLAIVGFSTPNVMRPYVQRG-- 258
Cdd:cd19970 158 EAGMKIVASQSANWEIDEANTVAANLLTAHPDIRGILcANDNMALGAIKAVDAAGKAGKVLVVGFDNIPAVRPLLKDGkm 237

                       250       260       270
                ....*....|....*....|....*....|..
5GTA_A      259 --TVKEFGlwdvVQQGKISVYVANALLKNMPM 288
Cdd:cd19970 238 laTIDQHP----AKQAVYGIEYALKMLNGEEV 265
PBP1_ABC_sugar_binding-like cd19965
monosaccharide ABC transporter substrate binding protein CUT2 family and similar proteins; ...
 29-221 2.41e-14

monosaccharide ABC transporter substrate binding protein CUT2 family and similar proteins; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380620 [Multi-domain]  Cd Length: 272  Bit Score: 71.92  E-value: 2.41e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQR 108
Cdd:cd19965   1 KFVFVTHVTTNPFFQPVKKGMDDACELLGAECQFTGPQTFDVAEQVSLLEAAIASGPDGIATTIVDPEAFDEVIKRALDA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      109 GVKILTW--DSDTKPECRSYYINQGTpKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWE 186
Cdd:cd19965  81 GIPVVAFnvDAPGGENARLAFVGQDL-YPAGYVLGKRIAEKFKPGGGHVLLGISTPGQSALEQRLDGIKQALKEYGRGIT 159

                       170       180       190
                ....*....|....*....|....*....|....*....
5GTA_A      187 IVTTqfgynDATKSLQTAEGIIKAY----PDLDAIIAPD 221
Cdd:cd19965 160 YDVI-----DTGTDLAEALSRIEAYytahPDIKAIFATG 193
PBP1_ABC_sugar_binding-like cd19997
monosaccharide ABC transporter substrate binding protein such as CUT2; Periplasmic ...
 49-218 4.49e-14

monosaccharide ABC transporter substrate binding protein such as CUT2; Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.


Pssm-ID: 380652 [Multi-domain]  Cd Length: 305  Bit Score: 71.55  E-value: 4.49e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       49 AQEAgKALGIDVTYDGPTEP-SVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECrsYY 127
Cdd:cd19997  25 AKKA-KADGLIADYIVVNADgSATTQISQIQNLILQGVDAIVIDAASPTALNGAIQQACDAGIKVVVFDSGVTEPC--AY 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      128 INQGTPKQLGSMLVEMAAHQVDKeKAKVAFFY----SSPtvtdqNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQT 203
Cdd:cd19997 102 ILNNDFEDYGAASVEYVADRLGG-KGNVLEVRgvagTSP-----DEEIYAGQVEALKKYPDLKVVAEVYGNWTQSVAQKA 175

                       170
                ....*....|....*
5GTA_A      204 AEGIIKAYPDLDAII 218
Cdd:cd19997 176 VTGILPSLPEVDAVI 190
PBP1_ABC_sugar_binding-like cd19998
monosaccharide ABC transporter substrate binding protein such as CUT2; Periplasmic ...
 66-219 6.20e-14

monosaccharide ABC transporter substrate binding protein such as CUT2; Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.


Pssm-ID: 380653 [Multi-domain]  Cd Length: 302  Bit Score: 71.17  E-value: 6.20e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       66 TEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECrSYYIN---QGTPKQLGSMLVE 142
Cdd:cd19998  41 SGTDVQAQISAIDNMIAAGYDAILIYAISPTALNPVIKRACDAGIVVVAFDNVVDEPC-AYNVNtdqAKAGEQTAQWLVD 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      143 MAAHqvdkeKAKVAFFYSSP--TVTDQNQwvkEAKAKISQEHPGWEIVTTQFG-YNDATKSLQTAEgIIKAYPDLDAIIA 219
Cdd:cd19998 120 KLGG-----KGNILMVRGVPgtSVDRDRY---EGAKEVFKKYPDIKVVAEYYGnWDDGTAQKAVAD-ALAAHPDVDGVWT 190
PBP1_ABC_sugar_binding-like cd19999
monosaccharide ABC transporter substrate binding protein such as CUT2; Periplasmic ...
 70-221 1.72e-13

monosaccharide ABC transporter substrate binding protein such as CUT2; Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.


Pssm-ID: 380654 [Multi-domain]  Cd Length: 313  Bit Score: 70.03  E-value: 1.72e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       70 VSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSdtkPECRSYYINQGTPKQLGSML-VEMAAHQV 148
Cdd:cd19999  46 ATGQISQIRNMINEGVDAILIDPVSATALNPVIEKAQAAGILVVSFDQ---PVSSPDAINVVIDQYKWAAIqAQWLAEQL 122

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
5GTA_A      149 DkEKAKVAFFYSSPTVTDQNQWVKEAKAKIsQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPD 221
Cdd:cd19999 123 G-GKGNIVAINGVAGNPANEARVKAADDVF-AKYPGIKVLASVPGGWDQATAQQVMATLLATYPDIDGVLTQD 193
PBP1_ABC_sugar_binding-like cd06312
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic ...
 41-129 1.88e-13

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380535 [Multi-domain]  Cd Length: 272  Bit Score: 69.57  E-value: 1.88e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDS-DT 119
Cdd:cd06312  14 FWSVVKKGAKDAAKDLGVTVQYLGPQNNDIADQARLIEQAIAAKPDGIIVTIPDPDALEPALKRAVAAGIPVIAINSgDD 93

                        90
                ....*....|
5GTA_A      120 KPECRSYYIN 129
Cdd:cd06312  94 RSKERLGALT 103
PBP1_ABC_sugar_binding-like cd06321
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; This group ...
 41-245 1.24e-12

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380544 [Multi-domain]  Cd Length: 270  Bit Score: 66.93  E-value: 1.24e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGIDVTYDG-PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 119
Cdd:cd06321  13 FFVAMVRGAEEAAAEINPGAKVTVvDARYDLAKQFSQIDDFIAQGVDLILLNAADSAGIEPAIKRAKDAGIIVVAVDVAA 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      120 KPEcrsyyinQGT----PKQLGSMLVEMAAHQVDkEKAKVAFFYSSP--TVTDQNQWVKEAKAkisqEHPGWEIVTTQFG 193
Cdd:cd06321  93 EGA-------DATvttdNVQAGYLACEYLVEQLG-GKGKVAIIDGPPvsAVIDRVNGCKEALA----EYPGIKLVDDQNG 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
5GTA_A      194 YNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF 245
Cdd:cd06321 161 KGSRAGGLSVMTRMLTAHPDVDGVFAINDPGAIGALLAAQQAGRDDIVITSV 212
PBP1_sensor_kinase-like cd06308
periplasmic binding domain of two-component sensor kinase signaling systems; Periplasmic ...
 51-219 1.34e-12

periplasmic binding domain of two-component sensor kinase signaling systems; Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.


Pssm-ID: 380531 [Multi-domain]  Cd Length: 268  Bit Score: 66.80  E-value: 1.34e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       51 EAGKALGIDVTY-DGptEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTkpECRSY--Y 127
Cdd:cd06308  24 EAAKYPNVELIVtDA--QGDAAKQIADIEDLIAQGVDLLIVSPNEADALTPVVKKAYDAGIPVIVLDRKV--SGDDYtaF 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      128 INQGTpKQLGsmlvEMAAHQVD---KEKAKVAFFY----SSPTVtDQNQWVKEAKAKisqeHPGWEIVTTQFGYNDATKS 200
Cdd:cd06308 100 IGADN-VEIG----RQAGEYIAellNGKGNVVEIQglpgSSPAI-DRHKGFLEAIAK----YPGIKIVASQDGDWLRDKA 169

                       170
                ....*....|....*....
5GTA_A      201 LQTAEGIIKAYPDLDAIIA 219
Cdd:cd06308 170 IKVMEDLLQAHPDIDAVYA 188
PRK09701 PRK09701
D-allose transporter substrate-binding protein;
4-219 1.83e-12

D-allose transporter substrate-binding protein;


Pssm-ID: 182037 [Multi-domain]  Cd Length: 311  Bit Score: 67.21  E-value: 1.83e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A         4 HSIKMIALLTAFGLASAVMTVQAAErIAFIPKLVGVGFFTSGGNGAQEAGKALGIDV-TYDGPTEPSVSGQVQLVNNFVN 82
Cdd:PRK09701   2 NKYLKYFSGTLVGLMLSTSAFAAAE-YAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVdIFASPSEGDFQSQLQLFEDLSN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        83 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDtkpecrsyyINQGTPKQLGSMLVEM------------AAHQVDK 150
Cdd:PRK09701  81 KNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK---------IDMDNLKKAGGNVEAFvttdnvavgakgASFIIDK 151

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
5GTA_A       151 ---EKAKVAFF---YSSPTVTDQNQWVKEAKAKISQehpgWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIA 219
Cdd:PRK09701 152 lgaEGGEVAIIegkAGNASGEARRNGATEAFKKASQ----IKLVASQPADWDRIKALDVATNVLQRNPNIKAIYC 222
PBP1_ABC_D-talitol-like cd06318
periplasmic D-talitol-binding protein of an ABC transport system and similar proteins; ...
 41-219 2.05e-12

periplasmic D-talitol-binding protein of an ABC transport system and similar proteins; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380541 [Multi-domain]  Cd Length: 282  Bit Score: 66.67  E-value: 2.05e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGIDVTY-DGptEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 119
Cdd:cd06318  13 YYAALVAAAKAEAKKLGVELVVtDA--QNDLTKQISDVEDLITRGVDVLILNPVDPEGLTPAVKAAKAAGIPVITVDSAL 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      120 KPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSP--TVTDQNQW------VKEAKAKISqeHPGWEIVTTQ 191
Cdd:cd06318  91 DPSANVATQVGRDNKQNGVLVGKEAAKALGGDPGKIIELSGDKgnEVSRDRRDgflagvNEYQLRKYG--KSNIKVVAQP 168

                       170       180
                ....*....|....*....|....*...
5GTA_A      192 FGYNDATKSLQTAEGIIKAYPDLDAIIA 219
Cdd:cd06318 169 YGNWIRSGAVAAMEDLLQAHPDINVVYA 196
PBP1_ABC_sugar_binding-like cd19971
monosaccharide ABC transporter substrate-binding protein; Periplasmic sugar-binding domain of ...
 41-219 2.18e-12

monosaccharide ABC transporter substrate-binding protein; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380626 [Multi-domain]  Cd Length: 267  Bit Score: 66.45  E-value: 2.18e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGID-VTYDGptEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 119
Cdd:cd19971  13 FFIAINDGIKKAVEANGDElITRDP--QLDQNKQNEQIEDMINQGVDAIFLNPVDSEGIRPALEAAKEAGIPVINVDTPV 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      120 K-PECRSYYI---NQGTPKQLGSMLVEMAAhqvdkEKAKVAFFYsSPTVTDQNQWVKEAKAKISqEHPGWEIVTTQFGYN 195
Cdd:cd19971  91 KdTDLVDSTIasdNYNAGKLCGEDMVKKLP-----EGAKIAVLD-HPTAESCVDRIDGFLDAIK-KNPKFEVVAQQDGKG 163

                       170       180
                ....*....|....*....|....
5GTA_A      196 DATKSLQTAEGIIKAYPDLDAIIA 219
Cdd:cd19971 164 QLEVAMPIMEDILQAHPDLDAVFA 187
PBP1_ABC_IbpA-like cd19968
periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins; The ...
 29-252 4.17e-12

periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins; The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.


Pssm-ID: 380623 [Multi-domain]  Cd Length: 271  Bit Score: 65.49  E-value: 4.17e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGID-VTYDGptEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd19968   1 KIGFSFPNLSFPFFVYMHEQAVDEAAKLGVKlVVLDA--QNSSSKQASDLENAIAQGVDGIIVSPIDVKALVPAIEAAIK 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      108 RGVKILTWDSdtKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSP---TVTDQNQWVKEAKAKisqeHPG 184
Cdd:cd19968  79 AGIPVVTVDR--RAEGAAPVPHVGADNVAGGREVAKFVVDKLPNGAKVIELTGTPgssPAIDRTKGFHEELAA----GPK 152

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
5GTA_A      185 WEIVTTQFGYNDATKSLQTAEGIIKAYP-DLDAIIAP--DANALPAAAQAAENLKRNNLAIVGF-STPNVMR 252
Cdd:cd19968 153 IKVVFEQTGNFERDEGLTVMENILTSLPgPPDAIICAndDMALGAIEAMRAAGLDLKKVKVIGFdAVPDALQ 224
PBP1_rhizopine_binding-like cd06301
periplasmic binding proteins specific to rhizopines; Periplasmic binding proteins specific to ...
 50-219 1.25e-11

periplasmic binding proteins specific to rhizopines; Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily.


Pssm-ID: 380524 [Multi-domain]  Cd Length: 272  Bit Score: 64.17  E-value: 1.25e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       50 QEAGKALGIDVTY-DGptEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYI 128
Cdd:cd06301  24 AYAKEYPGVKLVIvDA--QSDAAKQLSQVENFIAQGVDAIIVNPVDTDASAPAVDAAADAGIPLVYVNREPDSKPKGVAF 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      129 NQGTPKQLGSMLVEMAAHQVDkEKAKVAFFYSSPTVTDQNQWVKEAKAKISqEHPGWEIVTTQFGYNDATKSLQTAEGII 208
Cdd:cd06301 102 VGSDDIESGELQMEYLAKLLG-GKGNIAILDGVLGHEAQILRTEGNKDVLA-KYPGMKIVAEQTANWSREKAMDIVENWL 179

                       170
                ....*....|.
5GTA_A      209 KAYPDLDAIIA 219
Cdd:cd06301 180 QSGDKIDAIVA 190
PBP1_TmRBP-like cd19967
D-ribose ABC transporter substrate-binding protein such as Thermoanaerobacter tengcongensis ...
 41-285 3.50e-10

D-ribose ABC transporter substrate-binding protein such as Thermoanaerobacter tengcongensis ribose binding protein (ttRBP); Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type 1 periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.


Pssm-ID: 380622 [Multi-domain]  Cd Length: 272  Bit Score: 59.64  E-value: 3.50e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGIDVT-YDgpTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 119
Cdd:cd19967  13 FFVVEAEGAKEKAKELGYEVTvFD--HQNDTAKEAELFDTAIASGAKAIILDPADADASIAAVKKAKDAGIPVFLIDREI 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      120 KPECRSYYINQGTPKQLGSMLVEMAAHQVDkEKAKVAFFYSSPtvTDQNQWVKeAKAKIS--QEHPGWEIVTTQFGYNDA 197
Cdd:cd19967  91 NAEGVAVAQIVSDNYQGAVLLAQYFVKLMG-EKGLYVELLGKE--SDTNAQLR-SQGFHSviDQYPELKMVAQQSADWDR 166

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      198 TKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENL-KRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISV 276
Cdd:cd19967 167 TEAFEKMESILQANPDIKGVICGNDEMALGAIAALKAAgRAGDVIIVGFDGSNDVRDAIKEGKISATVLQPAKLIARLAV 246


                ....*....
5GTA_A      277 YVANALLKN 285
Cdd:cd19967 247 EQADQYLKG 255
PBP1_ABC_sugar_binding-like cd06311
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic ...
 49-221 2.49e-09

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380534 [Multi-domain]  Cd Length: 270  Bit Score: 57.37  E-value: 2.49e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       49 AQEAGKALGiDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYI 128
Cdd:cd06311  21 AEKQAKELA-DLEYKLVTSSNANEQVSQLEDLIAQKVDAIVILPQDSEELTVAAQKAKDAGIPVVNFDRGLNVLIYDLYV 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      129 nQGTPKQLGsmlVEMAAHQVDK--EKAKVAFFYSSPTVTDQNQWVKEAKAKISqEHPGWEIVTTQFGYNDATKSLQTAEG 206
Cdd:cd06311 100 -AGDNPGMG---VVSAEYIGKKlgGKGNVVVLEVPSSGSVNEERVAGFKEVIK-GNPGIKILAMQAGDWTREDGLKVAQD 174

                       170
                ....*....|....*
5GTA_A      207 IIKAYPDLDAIIAPD 221
Cdd:cd06311 175 ILTKNKKIDAVWAAD 189
PBP1_ABC_sugar_binding-like cd19973
monosaccharide ABC transporter substrate-binding protein; Periplasmic sugar-binding domain of ...
 41-164 4.84e-09

monosaccharide ABC transporter substrate-binding protein; Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.


Pssm-ID: 380628 [Multi-domain]  Cd Length: 285  Bit Score: 56.71  E-value: 4.84e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGIDV-TYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 119
Cdd:cd19973  13 FFVKMKEGAQKAAKALGIKLmTAAGKIDGDNATQVTAIENMIAAGAKGILITPSDTKAIVPAVKKARDAGVLVIALDTPT 92

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
5GTA_A      120 KPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAF--FYSSPTV 164
Cdd:cd19973  93 DPIDAADATFATDNFKAGVLIGEWAKAALGAKDAKIATldLTPGHTV 139
PBP1_ABC_sugar_binding-like cd06316
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic ...
 37-243 3.33e-08

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380539 [Multi-domain]  Cd Length: 294  Bit Score: 54.17  E-value: 3.33e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       37 VGVGFFTSGG--NGAQEAG-----KALGIDV--TYDGPTEPSVsgQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd06316   2 VAIAMHTTGSdwSRLQVAGikdtfEELGIEVvaVTDANFDPAK--QITDLETLIALKPDIIISIPVDPVATAAAYKKVAD 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      108 RGVKILTwdSDTKPecrsyyinQG--TPKQLGSM----LVEM---AAHQVDK---EKAKVAFFYSSPTVTDQNQWVKEAK 175
Cdd:cd06316  80 AGIKLVF--MDNVP--------DGleAGKDYVSVvssdNRGNgqiAAELLAEaigGKGKVGIIYHDADFYATNQRDKAFK 149

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
5GTA_A      176 AKISQEHPGWEIVTTQfGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIV 243
Cdd:cd06316 150 DTLKEKYPDIKIVAEQ-GFADPNDAEEVASAMLTANPDIDGIYVSWDTPALGVISALRAAGRSDIKIT 216
PRK10936 PRK10936
TMAO reductase system periplasmic protein TorT; Provisional
 24-288 4.55e-08

TMAO reductase system periplasmic protein TorT; Provisional


Pssm-ID: 236801 [Multi-domain]  Cd Length: 343  Bit Score: 53.80  E-value: 4.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        24 VQAAERI-AFIPKL-----VGVGFftsggnGAQEAGKALGIDVT------YDGPTEpsvsgQVQLVNNFVNQGYDAIIVS 91
Cdd:PRK10936  43 AKKAWKLcALYPHLkdsywLSVNY------GMVEEAKRLGVDLKvleaggYYNLAK-----QQQQLEQCVAWGADAILLG 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A        92 AVSPDGLCPALKRaMQRGVKILtwdsDTkpecrsyyINQ-GTPKQLGSMLV---EM---------AAHQVDKEKAKVAFF 158
Cdd:PRK10936 112 AVTPDGLNPDLEL-QAANIPVI----AL--------VNGiDSPQVTTRVGVswyQMgyqagrylaQWHPKGSKPLNVALL 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       159 ysspTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQT--AEGIIKAYPDLDAIIAPDANALPAAAQAAENLK 236
Cdd:PRK10936 179 ----PGPEGAGGSKAVEQGFRAAIAGSDVRIVDIAYGDNDKELQRnlLQELLERHPDIDYIAGSAVAAEAAIGELRGRNL 254

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
5GTA_A       237 RNNLAIVGF-STPNVMRPyVQRGTVkEFGLWD-VVQQGKISVYVANALLKNMPM 288
Cdd:PRK10936 255 TDKIKLVSFyLSHQVYRG-LKRGKV-LAAPSDqMVLQGRLAIDQAVRQLEGAPV 306
PBP1_ABC_sugar_binding-like cd06315
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic ...
 29-177 1.15e-05

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380538  Cd Length: 278  Bit Score: 46.18  E-value: 1.15e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDV-TYDGptEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ 107
Cdd:cd06315   2 TIAYVASDLRNGGVLGVGRGVKEAAAALGWKVdVLDG--GGTVTGRLAALNQALALKPDGIILGGDDAVELQEPLKKAVK 79

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
5GTA_A      108 RGVKILTWDSDTKP---ECRSYYINQGT-PKQLGsmlvEMAAHQV---DKEKAKVAFFyssptvTDQNQWVKEAKAK 177
Cdd:cd06315  80 AGIPVVGWHAAASPgpiPELGLFTNITTdPREVA----ETAAALViaqSGGKAGVVIF------TDSRYAIATAKAN 146
PBP1_ABC_xylose_binding-like cd01538
periplasmic xylose-like sugar-binding component of the ABC-type transport systems that belong ...
 50-220 1.40e-05

periplasmic xylose-like sugar-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily; Periplasmic xylose-like sugar-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.


Pssm-ID: 380480 [Multi-domain]  Cd Length: 283  Bit Score: 45.88  E-value: 1.40e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       50 QEAGKALGIDVTY---DGptepSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSY 126
Cdd:cd01538  22 VEQLEEKGAKVLVqsaDG----DKAKQASQIENLLTQGADVLVLAPVDGQALSPVVAEAKAEGIKVIAYDRLILNADVDY 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      127 YI---NQgtpkQLGsmlvEMAAHQVDKEKAKVAFFYSSPTVTDQNQ-------------WVKEAKAKISQEH--PGWeiv 188
Cdd:cd01538  98 YIsfdNE----KVG----ELQAQALLDAKPEGNYVLIGGSPTDNNAklfrdgqmkvlqpAIDSGKIKVVGDQwvDDW--- 166

                       170       180       190
                ....*....|....*....|....*....|...
5GTA_A      189 ttqfgynDATKSLQTAEGIIKAY-PDLDAIIAP 220
Cdd:cd01538 167 -------LPANAQQIMENALTANgNNVDAVVAS 192
PBP1_ABC_xylose_binding-like cd19992
periplasmic xylose-like sugar-binding component of the ABC-type transport systems; Periplasmic ...
 50-220 2.69e-05

periplasmic xylose-like sugar-binding component of the ABC-type transport systems; Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.


Pssm-ID: 380647 [Multi-domain]  Cd Length: 284  Bit Score: 45.27  E-value: 2.69e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       50 QEAGKALGIDVTYDGpTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYIN 129
Cdd:cd19992  22 EEEAKELGVELIFQV-ADNDAKTQASQVENLLAQGIDVLIIAPVDAGAAANIVDKAKAAGVPVISYDRLILNADVDLYVG 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      130 QGTPKqLGSMLVEMAAHQVdkEKAKVAFFY----SSPTVTDQNQWVKEAKAKIS---------QEHPGWeivttqfgynD 196
Cdd:cd19992 101 RDNYK-VGQLQAEYALEAV--PKGNYVILSgdpgDNNAQLITAGAMDVLQPAIDsgdikivldQYVKGW----------S 167

                       170       180
                ....*....|....*....|....*
5GTA_A      197 ATKSLQTAEGIIKAY-PDLDAIIAP 220
Cdd:cd19992 168 PDEAMKLVENALTANnNNIDAVLAP 192
PBP1_sugar_binding cd06307
periplasmic sugar-binding domain of uncharacterized transport systems; Periplasmic ...
 83-217 3.39e-05

periplasmic sugar-binding domain of uncharacterized transport systems; Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.


Pssm-ID: 380530 [Multi-domain]  Cd Length: 275  Bit Score: 44.86  E-value: 3.39e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       83 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYInqGT-PKQLGSMLVEMAAHQVDKEKAKVAFFYSS 161
Cdd:cd06307  57 AGCDGVALVAPDHPLVRAAIDELAARGIPVVTLVSDLPGSRRLAYV--GIdNRAAGRTAAWLMGRFLGRRPGKVLVILGS 134

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
5GTA_A      162 PTVTDQNQwvKEA--KAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAI 217
Cdd:cd06307 135 HRFRGHEE--REAgfRSVLRERFPDLTVLEVLEGLDDDELAYELLRELLARHPDLVGI 190
PBP1_ABC_sugar_binding-like cd06319
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic ...
 41-110 1.18e-04

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380542 [Multi-domain]  Cd Length: 278  Bit Score: 43.12  E-value: 1.18e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
5GTA_A       41 FFTSGGNGAQEAGKALGID-VTYDGPTepSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGV 110
Cdd:cd06319  13 FWQIMERGVQAAAEELGYEfVTYDQKN--SANEQVTNANDLIAQGVDGIIISPTNSSAAPTVLDLANEAKI 81
PBP1_arabinose_binding cd01540
periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose ...
 29-215 1.11e-03

periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily; Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such as LacI and GalR.


Pssm-ID: 380482 [Multi-domain]  Cd Length: 294  Bit Score: 40.35  E-value: 1.11e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTY-DGPTEPSVsgQVQLVNNFVNQGYDAIIVsaVSPD-GLCPA-LKRA 105
Cdd:cd01540   1 KIGFIVKQPDQPWFQDEWKGAKKAAKELGFEVIKiDAKMDGEK--VLSAIDNLIAQGAQGIVI--CTPDqKLGPAiAAKA 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      106 MQRGVKILTWD---SDTKPecrsyyiNQGTP------KQLGSMLVEMAAHQVDK----EKAKVAF----FYSSPTVTDQN 168
Cdd:cd01540  77 KAAGIPVIAVDdqlVDADP-------MKIVPfvgidaYKIGEAVGEWLAKEMKKrgwdDVKEVGVlaitMDTLSVCVDRT 149

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
5GTA_A      169 QWVKEakAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLD 215
Cdd:cd01540 150 DGAKD--ALKAAGFPEDQIFQAPYKGTDTEGAFNAANAVITAHPEVK 194
PBP1_ABC_xylose_binding cd19991
D-xylose binding periplasmic protein; Periplasmic xylose-binding component of the ABC-type ...
 73-116 1.33e-03

D-xylose binding periplasmic protein; Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.


Pssm-ID: 380646 [Multi-domain]  Cd Length: 284  Bit Score: 39.91  E-value: 1.33e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
5GTA_A       73 QVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWD 116
Cdd:cd19991  44 QISQAEELIEQGVDVLVVVPNNGEALAPIVKEAKKAGVPVLAYD 87
PBP1_ABC_sugar_binding-like cd19972
monosaccharide ABC transporter substrate-binding protein; Periplasmic sugar-binding domain of ...
 41-219 1.99e-03

monosaccharide ABC transporter substrate-binding protein; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380627 [Multi-domain]  Cd Length: 269  Bit Score: 39.35  E-value: 1.99e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       41 FFTSGGNGAQEAGKALGIDV-TYDGPTEPSVsgQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 119
Cdd:cd19972  13 FFNQIKQSVEAEAKKKGYKViTVDAKGDSAT--QVNQIQDLITQNIDALIYIPAGATAAAVPVKAARAAGIPVIAVDRNP 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      120 KP-ECRSYYINQ--GTPKQLGSMLVEMAAHqvdkeKAKVAFFYSSPTVTDQNQWVKEAKAKISqEHPGWEIVTTQFGYND 196
Cdd:cd19972  91 EDaPGDTFIATDsvAAAKELGEWVIKQTGG-----KGEIAILHGQLGTTPEVDRTKGFQEALA-EAPGIKVVAEQTADWD 164

                       170       180
                ....*....|....*....|...
5GTA_A      197 ATKSLQTAEGIIKAYPDLDAIIA 219
Cdd:cd19972 165 QDEGFKVAQDMLQANPNITVFFG 187
PBP1_ABC_sugar_binding-like cd06324
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; This group ...
 29-217 3.83e-03

periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.


Pssm-ID: 380547 [Multi-domain]  Cd Length: 317  Bit Score: 38.74  E-value: 3.83e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A       29 RIAFI-PKLVGVGFFTSGGNGAQEAGKALGIDVT-YDGPTEPSVsgQVQLVNNFVNQGY--DAIIVS---AVSPdglcPA 101
Cdd:cd06324   1 RVVFInPGKEDEPFWQNVTRFMQAAAKDLGIELEvLYANRNRFK--MLELAEELLARPPkpDYLILVnekGVAP----EL 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5GTA_A      102 LKRAMQRGVKILTWDSDTKPECR----------SYYI------NQGTPKQLGSMLVEMAAHQVDKEKAKVAFF---YSSP 162
Cdd:cd06324  75 LELAEQAKIPVFLINNDLTDEERallgkprekfKYWLgsivpdNEQAGYLLAKALIKAARKKSDDGKIRVLAIsgdKSTP 154

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
5GTA_A      163 TVTDQNQWVKEAkakiSQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAI 217
Cdd:cd06324 155 ASILREQGLRDA----LAEHPDVTLLQIVYANWSEDEAYQKTEKLLQRYPDIDIV 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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