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Conserved domains on  [gi|985483976|pdb|5CHE|E]
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Chain E, Protein FLUORESCENT IN BLUE LIGHT, chloroplastic

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 12138572)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR_12 pfam13424
Tetratricopeptide repeat;
87-157 3.58e-06

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 3.58e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
5CHE_E         87 KAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDS--GITEAYGAIADCYTELGDLEKAGKFYDTYIARLE 157
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
TPR_12 pfam13424
Tetratricopeptide repeat;
53-118 4.04e-05

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.06  E-value: 4.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
5CHE_E         53 GKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAA--RGLGASLQRQGKYREAIQYHSMVLAISKR 118
Cdd:pfam13424  10 AAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATtlLNLGRLYLELGRYEEALELLERALALAEK 77
 
Name Accession Description Interval E-value
TPR_12 pfam13424
Tetratricopeptide repeat;
87-157 3.58e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 3.58e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
5CHE_E         87 KAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDS--GITEAYGAIADCYTELGDLEKAGKFYDTYIARLE 157
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
56-155 5.92e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 5.92e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       56 FLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHsMVLAIskreseDSGITEAYGAIADC 135
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALEL-----DP-DNADALNNLGLLLLEQGRYDEAIALE-KALKL------DPNNAEALLNLAEL 68

                        90       100
                ....*....|....*....|
5CHE_E      136 YTELGDLEKAGKFYDTYIAR 155
Cdd:COG3063  69 LLELGDYDEALAYLERALEL 88
TPR_12 pfam13424
Tetratricopeptide repeat;
53-118 4.04e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.06  E-value: 4.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
5CHE_E         53 GKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAA--RGLGASLQRQGKYREAIQYHSMVLAISKR 118
Cdd:pfam13424  10 AAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATtlLNLGRLYLELGRYEEALELLERALALAEK 77
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 81-155 9.84e-05

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 39.97  E-value: 9.84e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
5CHE_E         81 DPTEeKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIAR 155
Cdd:TIGR02552  47 DPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP------RPYFHAAECLLALGEPESALKALDLAIEI 114
 
Name Accession Description Interval E-value
TPR_12 pfam13424
Tetratricopeptide repeat;
87-157 3.58e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 3.58e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
5CHE_E         87 KAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDS--GITEAYGAIADCYTELGDLEKAGKFYDTYIARLE 157
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
56-155 5.92e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 5.92e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       56 FLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHsMVLAIskreseDSGITEAYGAIADC 135
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALEL-----DP-DNADALNNLGLLLLEQGRYDEAIALE-KALKL------DPNNAEALLNLAEL 68

                        90       100
                ....*....|....*....|
5CHE_E      136 YTELGDLEKAGKFYDTYIAR 155
Cdd:COG3063  69 LLELGDYDEALAYLERALEL 88
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 53-154 8.36e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 8.36e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       53 GKTFLRNQEPEKAYTEFKIALELAQSLKDpteekkAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 132
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLEEAIAALRRALEL------DPDNAEALNNL 186

                        90       100
                ....*....|....*....|..
5CHE_E      133 ADCYTELGDLEKAGKFYDTYIA 154
Cdd:COG3914 187 GNALQDLGRLEEAIAAYRRALE 208
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
53-154 1.83e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 1.83e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       53 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 132
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALEL-----DP-DDAEALYNLGLAYLRLGRYEEALADYEQALEL------DPDDAEALNNL 82

                        90       100
                ....*....|....*....|..
5CHE_E      133 ADCYTELGDLEKAGKFYDTYIA 154
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALE 104
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 47-150 3.48e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 3.48e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       47 ISKLKTGKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgit 126
Cdd:COG2956   9 LGWYFKGLNYLLNGQPDKAIDLLEEALEL-----DP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------ 76

                        90       100
                ....*....|....*....|....
5CHE_E      127 EAYGAIADCYTELGDLEKAGKFYD 150
Cdd:COG2956  77 EALLELAQDYLKAGLLDRAEELLE 100
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 50-155 3.87e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 3.87e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       50 LKTGKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESEdsgiteAY 129
Cdd:COG4783   8 YALAQALLLAGDYDEAEALLEKALEL-----DP-DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE------AR 75

                        90       100
                ....*....|....*....|....*.
5CHE_E      130 GAIADCYTELGDLEKAGKFYDTYIAR 155
Cdd:COG4783  76 LNLGLALLKAGDYDEALALLEKALKL 101
TPR_12 pfam13424
Tetratricopeptide repeat;
53-118 4.04e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.06  E-value: 4.04e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
5CHE_E         53 GKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAA--RGLGASLQRQGKYREAIQYHSMVLAISKR 118
Cdd:pfam13424  10 AAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATtlLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 54-155 6.55e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 6.55e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       54 KTFLRNQEPEKAYTEFKialELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQYHsmvLAISKRESEDSGITEAYGAIA 133
Cdd:COG1729   1 KALLKAGDYDEAIAAFK---AFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAF---EKLLKRYPDSPKAPDALLKLG 74

                        90       100
                ....*....|....*....|..
5CHE_E      134 DCYTELGDLEKAGKFYDTYIAR 155
Cdd:COG1729  75 LSYLELGDYDKARATLEELIKK 96
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
53-154 8.40e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 8.40e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       53 GKTFLRNQEPEKAYTEFKIALELAQSLKDpteekkAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 132
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALELDPDDAE------ALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNL 116

                        90       100
                ....*....|....*....|..
5CHE_E      133 ADCYTELGDLEKAGKFYDTYIA 154
Cdd:COG0457 117 GLALLELGRYDEAIEAYERALE 138
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
53-157 9.06e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 9.06e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       53 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 132
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALEL-----DP-DDAEALYNLGLALLELGRYDEAIEAYERALEL------DPDDADALYNL 150

                        90       100
                ....*....|....*....|....*
5CHE_E      133 ADCYTELGDLEKAGKFYDTYIARLE 157
Cdd:COG0457 151 GIALEKLGRYEEALELLEKLEAAAL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
88-154 9.24e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 9.24e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
5CHE_E       88 AARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIADCYTELGDLEKAGKFYDTYIA 154
Cdd:COG0457  10 AYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALE 70
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 81-155 9.84e-05

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 39.97  E-value: 9.84e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
5CHE_E         81 DPTEeKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIAR 155
Cdd:TIGR02552  47 DPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP------RPYFHAAECLLALGEPESALKALDLAIEI 114
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 53-155 1.31e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 1.31e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       53 GKTFLRNQEPEKAYTEFKIALELaqslkDPTEEKkAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 132
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKL-----DPDCAR-ALLLLAELYLEQGDYEEAIAALERALEQ------DPDYLPALPRL 218

                        90       100
                ....*....|....*....|...
5CHE_E      133 ADCYTELGDLEKAGKFYDTYIAR 155
Cdd:COG2956 219 AELYEKLGDPEEALELLRKALEL 241
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 53-155 1.89e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 1.89e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       53 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAI 132
Cdd:COG4783  45 GEILLQLGDLDEAIVLLHEALEL-----DP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP------EAYLRL 112

                        90       100
                ....*....|....*....|...
5CHE_E      133 ADCYTELGDLEKAGKFYDTYIAR 155
Cdd:COG4783 113 ARAYRALGRPDEAIAALEKALEL 135
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 38-154 1.89e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 1.89e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       38 IVEPKKQELISKLKTGKTFLRNQEPEKAYTEFKIALELAQslkdptEEKKAARGLGASLQRQGKYREAIQYHSMVLAISK 117
Cdd:COG2956  68 LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141

                        90       100       110
                ....*....|....*....|....*....|....*..
5CHE_E      118 RESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIA 154
Cdd:COG2956 142 ENA------HAYCELAELYLEQGDYDEAIEALEKALK 172
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 53-159 2.03e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 2.03e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       53 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 132
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRL-----DP-DNADALLDLAEALLAAGDTEEAEELLERALAL------DPDNPEALYLL 91

                        90       100
                ....*....|....*....|....*..
5CHE_E      133 ADCYTELGDLEKAGKFYDTYIARLETD 159
Cdd:COG4235  92 GLAAFQQGDYAEAIAAWQKLLALLPAD 118
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 57-154 5.04e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.21  E-value: 5.04e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5CHE_E       57 LRNQEPEKAYTEFKIALELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIADCY 136
Cdd:COG3914  49 AALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL------NPDNAEALFNLGNLL 122

                        90
                ....*....|....*...
5CHE_E      137 TELGDLEKAGKFYDTYIA 154
Cdd:COG3914 123 LALGRLEEALAALRRALA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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