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Conserved domains on  [gi|1938882253|pdb|5AJ3|f]
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Chain f, MITORIBOSOMAL PROTEIN MS28, MRPS28

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP-S35 pfam10246
Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal ...
 75-179 5.69e-70

Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomenclature from these authors.


:

Pssm-ID: 402037 [Multi-domain]  Cd Length: 105  Bit Score: 207.75  E-value: 5.69e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5AJ3_f         75 PKNVESFASMLRHSPLTQMGPAKNKLVIGQIFHIVEDDLYIDFGGKFHCVCKRPEVDGEKYQKGTRVRLRLLDLELTSRF 154
Cdd:pfam10246   1 PKPVESFASLLRNSKLTQLGPAKGKLVIGKIFHIVEDDLYIDFGGKFHCVCKRPAVDGEKYQRGARVRLRLLDLELTSRF 80

                          90       100
                  ....*....|....*....|....*
5AJ3_f        155 LGATTDTTILEADAVLLGLQESKDS 179
Cdd:pfam10246  81 LGSTTDTTLLEADAVLLGLLESKDS 105
 
Name Accession Description Interval E-value
MRP-S35 pfam10246
Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal ...
 75-179 5.69e-70

Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomenclature from these authors.


Pssm-ID: 402037 [Multi-domain]  Cd Length: 105  Bit Score: 207.75  E-value: 5.69e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5AJ3_f         75 PKNVESFASMLRHSPLTQMGPAKNKLVIGQIFHIVEDDLYIDFGGKFHCVCKRPEVDGEKYQKGTRVRLRLLDLELTSRF 154
Cdd:pfam10246   1 PKPVESFASLLRNSKLTQLGPAKGKLVIGKIFHIVEDDLYIDFGGKFHCVCKRPAVDGEKYQRGARVRLRLLDLELTSRF 80

                          90       100
                  ....*....|....*....|....*
5AJ3_f        155 LGATTDTTILEADAVLLGLQESKDS 179
Cdd:pfam10246  81 LGSTTDTTLLEADAVLLGLLESKDS 105
 
Name Accession Description Interval E-value
MRP-S35 pfam10246
Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal ...
 75-179 5.69e-70

Mitochondrial ribosomal protein MRP-S35; This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomenclature from these authors.


Pssm-ID: 402037 [Multi-domain]  Cd Length: 105  Bit Score: 207.75  E-value: 5.69e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5AJ3_f         75 PKNVESFASMLRHSPLTQMGPAKNKLVIGQIFHIVEDDLYIDFGGKFHCVCKRPEVDGEKYQKGTRVRLRLLDLELTSRF 154
Cdd:pfam10246   1 PKPVESFASLLRNSKLTQLGPAKGKLVIGKIFHIVEDDLYIDFGGKFHCVCKRPAVDGEKYQRGARVRLRLLDLELTSRF 80

                          90       100
                  ....*....|....*....|....*
5AJ3_f        155 LGATTDTTILEADAVLLGLQESKDS 179
Cdd:pfam10246  81 LGSTTDTTLLEADAVLLGLLESKDS 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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