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Conserved domains on  [gi|1995667509|pdb|4V6M|BU]
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Chain BU, 50S ribosomal protein L24

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RplX COG0198
Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24 ...
 1-102 4.32e-47

Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 439968 [Multi-domain]  Cd Length: 104  Bit Score: 145.98  E-value: 4.32e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4V6M_BU       1 AAKIRRDDEVIVLTGKDKGKRGKVKNVL-SSGKVIVEGINLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVAIFNAATGKA 79
Cdd:COG0198   2 KMKIKKGDTVIVIAGKDKGKRGKVLKVLpKKNRVIVEGVNIVKKHQKPNQQ-NPQGGIIEKEAPIHISNVMLVDPKTGKP 80

                        90       100
                ....*....|....*....|....
4V6M_BU      80 DRVGFRF-EDGKKVRFFKSNSETI 102
Cdd:COG0198  81 TRVGFKVlEDGKKVRVCKKSGEVI 104
 
Name Accession Description Interval E-value
RplX COG0198
Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24 ...
 1-102 4.32e-47

Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439968 [Multi-domain]  Cd Length: 104  Bit Score: 145.98  E-value: 4.32e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4V6M_BU       1 AAKIRRDDEVIVLTGKDKGKRGKVKNVL-SSGKVIVEGINLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVAIFNAATGKA 79
Cdd:COG0198   2 KMKIKKGDTVIVIAGKDKGKRGKVLKVLpKKNRVIVEGVNIVKKHQKPNQQ-NPQGGIIEKEAPIHISNVMLVDPKTGKP 80

                        90       100
                ....*....|....*....|....
4V6M_BU      80 DRVGFRF-EDGKKVRFFKSNSETI 102
Cdd:COG0198  81 TRVGFKVlEDGKKVRVCKKSGEVI 104
rplX_bact TIGR01079
ribosomal protein L24, bacterial/organelle; This model recognizes bacterial and organellar ...
 2-102 3.39e-37

ribosomal protein L24, bacterial/organelle; This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273431 [Multi-domain]  Cd Length: 102  Bit Score: 120.84  E-value: 3.39e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4V6M_BU         2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQpGGIVEKEAAIQVSNVAIFNAATGKAD 80
Cdd:TIGR01079   1 MKIKKGDTVKVISGKDKGKRGKVLKVLPKkNKVIVEGVNMVKKHVKPVPANRQ-GGIIEKEAPIHISNVMLFDPKTGKAT 79

                          90       100
                  ....*....|....*....|...
4V6M_BU        81 RVGFRF-EDGKKVRFFKSNSETI 102
Cdd:TIGR01079  80 RVGYRFeEDGKKVRVFKKNGEII 102
KOW_RPL26 cd06089
KOW motif of Ribosomal Protein L26; RPL26 and its bacterial paralogs RPL24 have a KOW motif at ...
 7-71 4.63e-21

KOW motif of Ribosomal Protein L26; RPL26 and its bacterial paralogs RPL24 have a KOW motif at their N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. RPL26 makes a very minor contributions to the biogenesis, structure, and function of 60s ribosomal subunits. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage.


Pssm-ID: 240513  Cd Length: 65  Bit Score: 78.71  E-value: 4.63e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
4V6M_BU       7 DDEVIVLTGKDKGKRGKVKNVL-SSGKVIVEGINLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVAI 71
Cdd:cd06089   1 GDEVQVIRGKDKGKQGKVLKVDrKKNRVIVEGVNVVKKHVKPSQE-NPQGGIIEVEAPIHISNVML 65
ribosomal_L24 pfam17136
Ribosomal proteins 50S L24/mitochondrial 39S L24; This is the family of bacterial 50S ...
 38-98 4.99e-21

Ribosomal proteins 50S L24/mitochondrial 39S L24; This is the family of bacterial 50S ribosomal subunit proteins L24. It also carries some mitochondrial 39S L24 proteins.


Pssm-ID: 465359  Cd Length: 60  Bit Score: 78.64  E-value: 4.99e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
4V6M_BU        38 INLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRfEDGKKVRFFKSN 98
Cdd:pfam17136   1 VNMVKKHVKPSQQ-NPQGGIIEKEAPIHVSNVMLVDPKCGKPTRVGFK-EDGKKVRVSKKT 59
rplX PRK12281
50S ribosomal protein L24; Reviewed
 3-70 1.58e-13

50S ribosomal protein L24; Reviewed


Pssm-ID: 183399  Cd Length: 76  Bit Score: 60.05  E-value: 1.58e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
4V6M_BU        3 KIRRDDEVIVLTGKDKGKRGKVKNVL-SSGKVIVEGINLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVA 70
Cdd:PRK12281   6 KVKKGDMVKVIAGDDKGKTGKVLAVLpKKNRVIVEGVKIAKKAIKPSQK-NPNGGFIEKEMPIHISNVK 73
 
Name Accession Description Interval E-value
RplX COG0198
Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24 ...
 1-102 4.32e-47

Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L24 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439968 [Multi-domain]  Cd Length: 104  Bit Score: 145.98  E-value: 4.32e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4V6M_BU       1 AAKIRRDDEVIVLTGKDKGKRGKVKNVL-SSGKVIVEGINLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVAIFNAATGKA 79
Cdd:COG0198   2 KMKIKKGDTVIVIAGKDKGKRGKVLKVLpKKNRVIVEGVNIVKKHQKPNQQ-NPQGGIIEKEAPIHISNVMLVDPKTGKP 80

                        90       100
                ....*....|....*....|....
4V6M_BU      80 DRVGFRF-EDGKKVRFFKSNSETI 102
Cdd:COG0198  81 TRVGFKVlEDGKKVRVCKKSGEVI 104
rplX_bact TIGR01079
ribosomal protein L24, bacterial/organelle; This model recognizes bacterial and organellar ...
 2-102 3.39e-37

ribosomal protein L24, bacterial/organelle; This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273431 [Multi-domain]  Cd Length: 102  Bit Score: 120.84  E-value: 3.39e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4V6M_BU         2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQpGGIVEKEAAIQVSNVAIFNAATGKAD 80
Cdd:TIGR01079   1 MKIKKGDTVKVISGKDKGKRGKVLKVLPKkNKVIVEGVNMVKKHVKPVPANRQ-GGIIEKEAPIHISNVMLFDPKTGKAT 79

                          90       100
                  ....*....|....*....|...
4V6M_BU        81 RVGFRF-EDGKKVRFFKSNSETI 102
Cdd:TIGR01079  80 RVGYRFeEDGKKVRVFKKNGEII 102
KOW_RPL26 cd06089
KOW motif of Ribosomal Protein L26; RPL26 and its bacterial paralogs RPL24 have a KOW motif at ...
 7-71 4.63e-21

KOW motif of Ribosomal Protein L26; RPL26 and its bacterial paralogs RPL24 have a KOW motif at their N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. RPL26 makes a very minor contributions to the biogenesis, structure, and function of 60s ribosomal subunits. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage.


Pssm-ID: 240513  Cd Length: 65  Bit Score: 78.71  E-value: 4.63e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
4V6M_BU       7 DDEVIVLTGKDKGKRGKVKNVL-SSGKVIVEGINLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVAI 71
Cdd:cd06089   1 GDEVQVIRGKDKGKQGKVLKVDrKKNRVIVEGVNVVKKHVKPSQE-NPQGGIIEVEAPIHISNVML 65
ribosomal_L24 pfam17136
Ribosomal proteins 50S L24/mitochondrial 39S L24; This is the family of bacterial 50S ...
 38-98 4.99e-21

Ribosomal proteins 50S L24/mitochondrial 39S L24; This is the family of bacterial 50S ribosomal subunit proteins L24. It also carries some mitochondrial 39S L24 proteins.


Pssm-ID: 465359  Cd Length: 60  Bit Score: 78.64  E-value: 4.99e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
4V6M_BU        38 INLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRfEDGKKVRFFKSN 98
Cdd:pfam17136   1 VNMVKKHVKPSQQ-NPQGGIIEKEAPIHVSNVMLVDPKCGKPTRVGFK-EDGKKVRVSKKT 59
rplX PRK12281
50S ribosomal protein L24; Reviewed
 3-70 1.58e-13

50S ribosomal protein L24; Reviewed


Pssm-ID: 183399  Cd Length: 76  Bit Score: 60.05  E-value: 1.58e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
4V6M_BU        3 KIRRDDEVIVLTGKDKGKRGKVKNVL-SSGKVIVEGINLVKKHQKPVPAlNQPGGIVEKEAAIQVSNVA 70
Cdd:PRK12281   6 KVKKGDMVKVIAGDDKGKTGKVLAVLpKKNRVIVEGVKIAKKAIKPSQK-NPNGGFIEKEMPIHISNVK 73
rpl24 CHL00141
ribosomal protein L24; Validated
 3-74 1.16e-10

ribosomal protein L24; Validated


Pssm-ID: 214374  Cd Length: 83  Bit Score: 53.11  E-value: 1.16e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
4V6M_BU        3 KIRRDDEVIVLTGKDKGKRGKVKNVL-SSGKVIVEGINLVKKHQKPVpALNQPGGIVEKEAAIQVSNVAIFNA 74
Cdd:CHL00141   8 HVKIGDTVKIISGSDKGKIGEVLKIIkKSNKVIVKGINIKFKHIKPN-KENEVGEIKQFEAPIHSSNVMLYNE 79
Ribosomal_L26 pfam16906
Ribosomal proteins L26 eukaryotic, L24P archaeal; Ribosomal_L26 is a family of the 50S and the ...
 4-49 9.86e-06

Ribosomal proteins L26 eukaryotic, L24P archaeal; Ribosomal_L26 is a family of the 50S and the 60S ribosomal proteins from eukaryotes - L26 - and archaea - L25.


Pssm-ID: 465307 [Multi-domain]  Cd Length: 114  Bit Score: 40.95  E-value: 9.86e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
4V6M_BU         4 IRRDDEVIVLTGKDKGKRGKVKNV-LSSGKVIVEGINLVKKHQKPVP 49
Cdd:pfam16906  42 IRKGDEVKVVRGDFKGREGKVVQVyRKKYRIHVEGVTREKANGTTVP 88
PTZ00194 PTZ00194
60S ribosomal protein L26; Provisional
 4-49 2.94e-04

60S ribosomal protein L26; Provisional


Pssm-ID: 185508  Cd Length: 143  Bit Score: 37.42  E-value: 2.94e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
4V6M_BU        4 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVI-VEGINLVKKHQKPVP 49
Cdd:PTZ00194  47 VRKDDEVMVVRGHHKGREGKVTAVYRKKWVIhIEKITREKANGEPVQ 93
rplX_A_E TIGR01080
ribosomal protein uL24, archaeal/eukaryotic form; This model represents the archaeal and ...
 1-49 9.32e-03

ribosomal protein uL24, archaeal/eukaryotic form; This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by related model TIGR01079. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273432  Cd Length: 114  Bit Score: 32.90  E-value: 9.32e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
4V6M_BU         1 AAKIRRDDEVIVLTGKDKGKRGKVKNV-LSSGKVIVEGINLVKKHQKPVP 49
Cdd:TIGR01080  39 ALPIRKGDEVRIVRGDFKGHEGKVSKVdRKRYRIYVEGVTKEKVDGTEVP 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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