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Conserved domains on  [gi|285803496|pdb|3KD7|B]
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Chain B, CTPR390

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-125 2.89e-42

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 146.68  E-value: 2.89e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        2 AMDPgNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Cdd:COG3914 106 ALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
3KD7_B       82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-125 2.89e-42

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 146.68  E-value: 2.89e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        2 AMDPgNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Cdd:COG3914 106 ALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
3KD7_B       82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 7-125 3.77e-26

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 96.68  E-value: 3.77e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:NF040959  69 DDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLA 148

                         90       100       110
                 ....*....|....*....|....*....|....*....
3KD7_B        87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:NF040959 149 LDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKG 187
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 15-107 1.53e-19

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 79.73  E-value: 1.53e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQ 94
Cdd:NF040959 111 KGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHE 190

                         90
                 ....*....|...
3KD7_B        95 KAIEDYQKALELD 107
Cdd:NF040959 191 TAAEHFKKAMELE 203
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 4-125 9.80e-16

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 70.06  E-value: 9.80e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRR 83
Cdd:TIGR02521  26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
3KD7_B         84 GNAYYKQGDYQKAIEDYQKALE--LDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAG 149
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 7-124 6.07e-15

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 69.73  E-value: 6.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN--NASAWYNL------------GNAYYKQGDYQKAIEYYQKALEL 72
Cdd:PRK11447  301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHssNRDKWESLlkvnrywlliqqGDAALKANNLAQAERLYQQARQV 380

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
3KD7_B         73 DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Cdd:PRK11447  381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 11-74 1.75e-14

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 67.19  E-value: 1.75e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3KD7_B        11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Cdd:NF033920 192 AYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
TPR_12 pfam13424
Tetratricopeptide repeat;
9-75 2.73e-14

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 62.79  E-value: 2.73e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALEL--------DPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 14-120 7.09e-13

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 63.42  E-value: 7.09e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN--AKAWY-------RRG 84
Cdd:cd24142   5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgyEKYLYlgqlsggEEA 84

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       85 NAYYKQG--DYQKAIEDYQKALELDPNNAKA-KQNLGNA 120
Cdd:cd24142  85 LQYYEKGieILEEELQALQAASAEAEEEAEElKRKLSSA 123
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 7-73 7.53e-11

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 56.62  E-value: 7.53e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3KD7_B         7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELD 73
Cdd:NF040959 137 DNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELE 203
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 43-76 1.17e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 52.45  E-value: 1.17e-10
                           10        20        30
                   ....*....|....*....|....*....|....
3KD7_B          43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN 76
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 27-125 1.78e-06

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 45.20  E-value: 1.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        27 KAIEY------YQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDY 100
Cdd:NF033758  64 KAFDYpslerkFKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALY 143

                         90       100
                 ....*....|....*....|....*
3KD7_B       101 QKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:NF033758 144 QDVLKRYPDDASSRARLAEIYRQTG 168
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 14-71 2.98e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 36.05  E-value: 2.98e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3KD7_B        14 NLGNAYYKQGDYQKAIEYYQKALEL--------DPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Cdd:NF040586 525 NLAVSLRLLGDYREALELDREVLRRrrrvlgpdHPRTLLSANNLARDLRELGRYAEALDLLEEALE 590
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-125 2.89e-42

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 146.68  E-value: 2.89e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        2 AMDPgNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Cdd:COG3914 106 ALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
3KD7_B       82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 7-125 1.08e-38

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 137.05  E-value: 1.08e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG3914  76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG 194
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-125 2.25e-33

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 116.64  E-value: 2.25e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG0457  86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 7-115 4.43e-33

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 112.41  E-value: 4.43e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG4235  15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                        90       100
                ....*....|....*....|....*....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Cdd:COG4235  95 AFQQGDYAEAIAAWQKLLALLPADAPARL 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-125 2.43e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 113.95  E-value: 2.43e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG0457  40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLA 119

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG0457 120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-125 1.60e-29

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 107.12  E-value: 1.60e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG2956 108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL 187

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG2956 188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-125 4.18e-29

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 106.35  E-value: 4.18e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG2956  74 DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAEL 153

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG2956 154 YLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-117 1.06e-28

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 108.93  E-value: 1.06e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        2 AMDPGNsAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Cdd:COG3914 140 ALNPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218

                        90       100       110
                ....*....|....*....|....*....|....*.
3KD7_B       82 RRGNAYYKQGDYQkAIEDYQKALELDPNNAKAKQNL 117
Cdd:COG3914 219 NLLFALRQACDWE-VYDRFEELLAALARGPSELSPF 253
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-125 2.06e-28

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 104.43  E-value: 2.06e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG2956  40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI 119

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG2956 120 YEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 12-125 2.38e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 101.73  E-value: 2.38e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQG 91
Cdd:COG2956  11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                        90       100       110
                ....*....|....*....|....*....|....
3KD7_B       92 DYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG2956  91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEG 124
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 27-125 3.80e-27

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 97.38  E-value: 3.80e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       27 KAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                        90
                ....*....|....*....
3KD7_B      107 DPNNAKAKQNLGNAKQKQG 125
Cdd:COG4235  81 DPDNPEALYLLGLAAFQQG 99
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
7-125 6.92e-27

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 99.22  E-value: 6.92e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG4785  71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD 189
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 9-125 1.23e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 96.41  E-value: 1.23e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYY 88
Cdd:COG4783   4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                        90       100       110
                ....*....|....*....|....*....|....*..
3KD7_B       89 KQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG4783  84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 7-125 3.77e-26

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 96.68  E-value: 3.77e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:NF040959  69 DDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLA 148

                         90       100       110
                 ....*....|....*....|....*....|....*....
3KD7_B        87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:NF040959 149 LDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKG 187
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-110 7.91e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 94.10  E-value: 7.91e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG4783  36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115

                        90       100
                ....*....|....*....|....
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNN 110
Cdd:COG4783 116 YRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-124 2.04e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.84  E-value: 2.04e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG0457  74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                        90       100       110
                ....*....|....*....|....*....|....*...
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Cdd:COG0457 154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 6-111 2.86e-25

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 96.34  E-value: 2.86e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGN 85
Cdd:COG2956 141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE 220

                        90       100
                ....*....|....*....|....*.
3KD7_B       86 AYYKQGDYQKAIEDYQKALELDPNNA 111
Cdd:COG2956 221 LYEKLGDPEEALELLRKALELDPSDD 246
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 6-125 6.85e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 95.06  E-value: 6.85e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGN 85
Cdd:COG3914  41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGN 120

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
3KD7_B       86 AYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
36-125 1.44e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.53  E-value: 1.44e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       36 LELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                        90
                ....*....|
3KD7_B      116 NLGNAKQKQG 125
Cdd:COG0457  81 NLGLALQALG 90
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
18-109 7.85e-22

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 82.53  E-value: 7.85e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       18 AYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEyYQKALELDPNNAKAWYRRGNAYYKQGDYQKAI 97
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                        90
                ....*....|..
3KD7_B       98 EDYQKALELDPN 109
Cdd:COG3063  80 AYLERALELDPS 91
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 15-107 1.53e-19

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 79.73  E-value: 1.53e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQ 94
Cdd:NF040959 111 KGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHE 190

                         90
                 ....*....|...
3KD7_B        95 KAIEDYQKALELD 107
Cdd:NF040959 191 TAAEHFKKAMELE 203
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1-120 2.10e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 77.26  E-value: 2.10e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        1 GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELdPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80
Cdd:COG4785  32 AAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAY 110

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
3KD7_B       81 YRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Cdd:COG4785 111 NNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 9-108 1.81e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 73.46  E-value: 1.81e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYY 88
Cdd:COG5010  54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                        90       100
                ....*....|....*....|
3KD7_B       89 KQGDYQKAIEDYQKALELDP 108
Cdd:COG5010 134 SLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-120 6.91e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 73.03  E-value: 6.91e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        2 AMDPGNsAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Cdd:COG4785 101 ELDPDL-AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
3KD7_B       82 RRGNAYYKQGD---YQKAIEDYQKALELDPNNAKAKQNLGNA 120
Cdd:COG4785 180 WLYLAERKLDPekaLALLLEDWATAYLLQGDTEEARELFKLA 221
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-107 6.98e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 74.00  E-value: 6.98e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAkAWYRRGNA 86
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLLALADL 254

                        90       100
                ....*....|....*....|.
3KD7_B       87 YYKQGDYQKAIEDYQKALELD 107
Cdd:COG2956 255 LERKEGLEAALALLERQLRRH 275
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 18-115 7.87e-17

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 70.41  E-value: 7.87e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       18 AYYKQGDYQKAIEYYQKALELDPNN---ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK---AWYRRGNAYYKQG 91
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                        90       100
                ....*....|....*....|....
3KD7_B       92 DYQKAIEDYQKALELDPNNAKAKQ 115
Cdd:COG1729  82 DYDKARATLEELIKKYPDSEAAKE 105
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 43-125 3.70e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 3.70e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122
Cdd:COG2956   8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87


                ...
3KD7_B      123 KQG 125
Cdd:COG2956  88 KAG 90
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 4-125 9.80e-16

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 70.06  E-value: 9.80e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRR 83
Cdd:TIGR02521  26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
3KD7_B         84 GNAYYKQGDYQKAIEDYQKALE--LDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAG 149
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 2-119 1.15e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 71.65  E-value: 1.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          2 AMDPGNSAEAwKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Cdd:TIGR02917 561 ELNPQEIEPA-LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL 639

                          90       100       110
                  ....*....|....*....|....*....|....*...
3KD7_B         82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGN 119
Cdd:TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-125 3.14e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 70.50  E-value: 3.14e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELD------------- 73
Cdd:TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDpelgradlllils 440

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3KD7_B         74 ---------------------PNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02917 441 ylrsgqfdkalaaakklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG 513
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 7-124 6.07e-15

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 69.73  E-value: 6.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN--NASAWYNL------------GNAYYKQGDYQKAIEYYQKALEL 72
Cdd:PRK11447  301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHssNRDKWESLlkvnrywlliqqGDAALKANNLAQAERLYQQARQV 380

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
3KD7_B         73 DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Cdd:PRK11447  381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 24-112 7.36e-15

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 69.05  E-value: 7.36e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        24 DYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103
Cdd:PLN03088  17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96


                 ....*....
3KD7_B       104 LELDPNNAK 112
Cdd:PLN03088  97 ASLAPGDSR 105
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 11-74 1.75e-14

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 67.19  E-value: 1.75e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
3KD7_B        11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Cdd:NF033920 192 AYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 9-125 2.06e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.09  E-value: 2.06e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYY 88
Cdd:TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410

                          90       100       110
                  ....*....|....*....|....*....|....*..
3KD7_B         89 KQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-109 2.10e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.19  E-value: 2.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406

                          90       100
                  ....*....|....*....|...
3KD7_B         87 YYKQGDYQKAIEDYQKALELDPN 109
Cdd:TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE 429
TPR_12 pfam13424
Tetratricopeptide repeat;
9-75 2.73e-14

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 62.79  E-value: 2.73e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALEL--------DPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
52-125 3.16e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 63.27  E-value: 3.16e-14
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3KD7_B       52 AYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEdYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG 73
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 9-124 4.83e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.93  E-value: 4.83e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNAsAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYY 88
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205

                          90       100       110
                  ....*....|....*....|....*....|....*..
3KD7_B         89 KQGDYQKAIEDYQ-KALELDPNNAKAKQNLGNAKQKQ 124
Cdd:TIGR00990 206 GLGKYADALLDLTaSCIIDGFRNEQSAQAVERLLKKF 242
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-124 5.29e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 5.29e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187

                        90       100       110
                ....*....|....*....|....*....|....*...
3KD7_B       87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Cdd:COG0457 188 LALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 23-109 1.32e-13

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 65.32  E-value: 1.32e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       23 GDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPnNAKAWYRRGNAYYKQGDYQKAIEDYQK 102
Cdd:COG3071 238 GDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRK 316


                ....*..
3KD7_B      103 ALELDPN 109
Cdd:COG3071 317 ALALALG 323
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 23-116 3.32e-13

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 62.38  E-value: 3.32e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        23 GDYQKAIEYYQKALEL--DPNNAS-AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGD------- 92
Cdd:PRK02603  49 GEYAEALENYEEALKLeeDPNDRSyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEkaeeagd 128

                         90       100       110
                 ....*....|....*....|....*....|.
3KD7_B        93 -------YQKAIEDYQKALELDPNNAKAKQN 116
Cdd:PRK02603 129 qdeaealFDKAAEYWKQAIRLAPNNYIEAQN 159
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-117 3.47e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.72  E-value: 3.47e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDyQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWL 846

                          90       100       110
                  ....*....|....*....|....*....|.
3KD7_B         87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Cdd:TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 9-125 3.91e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 3.91e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQG---------DYQKAIEYYQKALELDPNNAKA 79
Cdd:COG3914   1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAalaeaaaaaLLALAAGEAAAAAAALLLLAAL 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
3KD7_B       80 WYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG3914  81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG 126
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 6-125 4.82e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.33  E-value: 4.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGN 85
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
3KD7_B         86 AYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581
Ycf37 COG5714
Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; ...
 4-82 4.97e-13

Photosystem I assembly protein Ycf37, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf37, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444424 [Multi-domain]  Cd Length: 176  Bit Score: 61.88  E-value: 4.97e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
3KD7_B        4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYR 82
Cdd:COG5714  86 EPENLALIYNALGFAYFAQEQYDLAIRQYKEALKLKPDYVTALNNLGHAYEKKKLTAQALETYEEALKLDPNNKTAKRR 164
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 4-118 5.06e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.33  E-value: 5.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          4 DPGNsAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRR 83
Cdd:TIGR02917 189 DPGN-VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK 267

                          90       100       110
                  ....*....|....*....|....*....|....*
3KD7_B         84 GNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Cdd:TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAG 302
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 14-120 7.09e-13

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 63.42  E-value: 7.09e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN--AKAWY-------RRG 84
Cdd:cd24142   5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgyEKYLYlgqlsggEEA 84

                        90       100       110
                ....*....|....*....|....*....|....*....
3KD7_B       85 NAYYKQG--DYQKAIEDYQKALELDPNNAKA-KQNLGNA 120
Cdd:cd24142  85 LQYYEKGieILEEELQALQAASAEAEEEAEElKRKLSSA 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
7-75 8.30e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 59.41  E-value: 8.30e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEyYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Cdd:COG3063  24 DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 15-125 9.05e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.56  E-value: 9.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQ 94
Cdd:TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380

                          90       100       110
                  ....*....|....*....|....*....|.
3KD7_B         95 KAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQG 411
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 2-125 9.69e-13

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.18  E-value: 9.69e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          2 AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAwyNLGNAYYK--QGDYQKAIEYYQKALELDPNNAKA 79
Cdd:TIGR02917 118 LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLAlaENRFDEARALIDEVLTADPGNVDA 195

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
3KD7_B         80 WYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAG 241
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-117 1.39e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.79  E-value: 1.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAwYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAEL 779

                          90       100       110
                  ....*....|....*....|....*....|.
3KD7_B         87 YYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL 810
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 18-125 3.08e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.59  E-value: 3.08e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       18 AYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAI 97
Cdd:COG5010  29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                        90       100
                ....*....|....*....|....*...
3KD7_B       98 EDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG5010 109 EYYEKALALSPDNPNAYSNLAALLLSLG 136
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 8-113 3.58e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.64  E-value: 3.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN----------- 76
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNteaqiglaqll 679

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         77 --------AKAWYRR---------------GNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Cdd:TIGR02917 680 laakrtesAKKIAKSlqkqhpkaalgfeleGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 47-114 4.10e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 61.11  E-value: 4.10e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3KD7_B       47 YNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAK 114
Cdd:cd24142   4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 18-125 5.54e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.25  E-value: 5.54e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         18 AYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAI 97
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519

                          90       100
                  ....*....|....*....|....*...
3KD7_B         98 EDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTG 547
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 5-115 7.08e-12

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 59.89  E-value: 7.08e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNN---ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK--- 78
Cdd:COG4105  28 KSWDAEELYEEAKEALEKGDYEKAIKLFEELEPRYPGSpyaEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSPNady 107

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
3KD7_B       79 AWYRRGNAYYK--------QGDYQKAIEDYQKALELDPNNAKAKQ 115
Cdd:COG4105 108 AYYLRGLSYYEqspdsdrdQTSTRKAIEAFQELINRYPDSEYAED 152
TPR_12 pfam13424
Tetratricopeptide repeat;
43-109 8.21e-12

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.63  E-value: 8.21e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3KD7_B         43 ASAWYNLGNAYYKQGDYQKAIEYYQKALEL--------DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
7-109 1.15e-11

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 59.51  E-value: 1.15e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALE-LDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP--NNAKAWYRR 83
Cdd:COG4700  87 DTVQNRVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfKSSDAHLLY 166

                        90       100
                ....*....|....*....|....*.
3KD7_B       84 GNAYYKQGDYQKAIEDYQKALELDPN 109
Cdd:COG4700 167 ARALEALGDLEAAEAELEALARRYSG 192
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 7-111 1.48e-11

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 58.89  E-value: 1.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALE--LDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRG 84
Cdd:TIGR02521  97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176

                          90       100
                  ....*....|....*....|....*..
3KD7_B         85 NAYYKQGDYQKAIEDYQKALELDPNNA 111
Cdd:TIGR02521 177 ELYYLRGQYKDARAYLERYQQTYNQTA 203
TPR_11 pfam13414
TPR repeat;
16-57 1.67e-11

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 54.79  E-value: 1.67e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
3KD7_B         16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQG 57
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 6-75 3.17e-11

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 58.77  E-value: 3.17e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPnNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Cdd:COG3071 255 PNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 4-109 4.70e-11

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 57.56  E-value: 4.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDP---NNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK-- 78
Cdd:TIGR03302  28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPfspYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDad 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
3KD7_B         79 -AWYRRGNAYYKQ--------GDYQKAIEDYQKALELDPN 109
Cdd:TIGR03302 108 yAYYLRGLSNYNQidrvdrdqTAAREAFEAFQELIRRYPN 147
TPR_1 pfam00515
Tetratricopeptide repeat;
43-76 6.58e-11

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 53.19  E-value: 6.58e-11
                          10        20        30
                  ....*....|....*....|....*....|....
3KD7_B         43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN 76
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 4-76 6.92e-11

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 56.22  E-value: 6.92e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGD--------------YQKAIEYYQKA 69
Cdd:PRK02603  67 DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQA 146


                 ....*..
3KD7_B        70 LELDPNN 76
Cdd:PRK02603 147 IRLAPNN 153
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 7-73 7.53e-11

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 56.62  E-value: 7.53e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3KD7_B         7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELD 73
Cdd:NF040959 137 DNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELE 203
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 58-113 9.73e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.49  E-value: 9.73e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
3KD7_B        58 DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Cdd:PLN03088  17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA 72
TPR_1 pfam00515
Tetratricopeptide repeat;
77-110 1.02e-10

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 52.42  E-value: 1.02e-10
                          10        20        30
                  ....*....|....*....|....*....|....
3KD7_B         77 AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
9-42 1.03e-10

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 52.42  E-value: 1.03e-10
                          10        20        30
                  ....*....|....*....|....*....|....
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNN 42
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 43-76 1.17e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 52.45  E-value: 1.17e-10
                           10        20        30
                   ....*....|....*....|....*....|....
3KD7_B          43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN 76
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 9-42 1.78e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 52.06  E-value: 1.78e-10
                           10        20        30
                   ....*....|....*....|....*....|....
3KD7_B           9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNN 42
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 16-125 2.24e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 56.63  E-value: 2.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN--NAKAW------------Y 81
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHssNRDKWesllkvnrywllI 355

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
3KD7_B         82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:PRK11447  356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK 399
TPR_9 pfam13371
Tetratricopeptide repeat;
49-113 2.39e-10

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 52.61  E-value: 2.39e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
3KD7_B         49 LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Cdd:pfam13371   1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 10-115 2.55e-10

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 53.82  E-value: 2.55e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNN---ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK---AWYRR 83
Cdd:TIGR02795   1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKStyaPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKapdALLKL 80

                          90       100       110
                  ....*....|....*....|....*....|..
3KD7_B         84 GNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Cdd:TIGR02795  81 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 7-74 3.14e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.58  E-value: 3.14e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3KD7_B        7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Cdd:COG5010  86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_11 pfam13414
TPR repeat;
50-91 3.32e-10

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 51.32  E-value: 3.32e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
3KD7_B         50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQG 91
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 22-74 3.49e-10

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 55.97  E-value: 3.49e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
3KD7_B        22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Cdd:PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245
COG3899 COG3899
Predicted ATPase [General function prediction only];
9-125 3.55e-10

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 56.02  E-value: 3.55e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWY------NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYR 82
Cdd:COG3899  705 ARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYrlalllELAEALYLAGRFEEAEALLERALAARALAALAALR 784

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        83 RGN-----------AYYKQGDYQKAIEDYQKALEL------DPNNAKAKQNLGNAKQKQG 125
Cdd:COG3899  785 HGNppasarayanlGLLLLGDYEEAYEFGELALALaerlgdRRLEARALFNLGFILHWLG 844
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 9-79 4.88e-10

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.69  E-value: 4.88e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
3KD7_B        9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNN---ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKA 79
Cdd:COG1729  30 PDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 77-110 4.96e-10

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 50.91  E-value: 4.96e-10
                           10        20        30
                   ....*....|....*....|....*....|....
3KD7_B          77 AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 24-108 5.35e-10

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 55.20  E-value: 5.35e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        24 DYQKAIEYYQKALELDPNN-----ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98
Cdd:PRK11788 156 DWQKAIDVAERLEKLGGDSlrveiAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235

                         90
                 ....*....|
3KD7_B        99 DYQKALELDP 108
Cdd:PRK11788 236 ALERVEEQDP 245
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-113 5.74e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 5.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         19 YYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622

                          90
                  ....*....|....*
3KD7_B         99 DYQKALELDPNNAKA 113
Cdd:TIGR02917 623 SFKKLLALQPDSALA 637
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 14-77 9.01e-10

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 51.18  E-value: 9.01e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3KD7_B         14 NLGNAYYKQGDYQKAIEYYQKALELD---PNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNA 77
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_9 pfam13371
Tetratricopeptide repeat;
15-79 1.45e-09

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 50.68  E-value: 1.45e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
3KD7_B         15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKA 79
Cdd:pfam13371   1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 47-111 2.20e-09

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 50.03  E-value: 2.20e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3KD7_B         47 YNLGNAYYKQGDYQKAIEYYQKALELD---PNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 15-115 2.45e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 2.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         15 LGNAYYK--QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGD 92
Cdd:TIGR02917 163 LGLAQLAlaENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242

                          90       100
                  ....*....|....*....|...
3KD7_B         93 YQKAIEDYQKALELDPNNAKAKQ 115
Cdd:TIGR02917 243 FEEAEKHADALLKKAPNSPLAHY 265
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 43-125 3.11e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.45  E-value: 3.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAkAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205


                  ...
3KD7_B        123 KQG 125
Cdd:TIGR00990 206 GLG 208
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 16-124 4.73e-09

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 52.78  E-value: 4.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQG---- 91
Cdd:PRK11447  358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSpeka 437

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
3KD7_B         92 ---------DYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Cdd:PRK11447  438 lafiaslsaSQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
33-108 7.89e-09

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 51.81  E-value: 7.89e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3KD7_B       33 QKALELDPNNASaWYNLGNAYYKQGDYQKAIEYYQKALE-LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Cdd:COG4700  80 EKALEFADTVQN-RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNP 155
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 23-105 8.27e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.91  E-value: 8.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         23 GDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQK 102
Cdd:TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458


                  ...
3KD7_B        103 ALE 105
Cdd:TIGR00990 459 CKK 461
TPR_19 pfam14559
Tetratricopeptide repeat;
22-80 9.82e-09

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 48.35  E-value: 9.82e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
3KD7_B         22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 52-117 1.03e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.22  E-value: 1.03e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3KD7_B       52 AYYKQGDYQKAIEYYQKALELDPNN---AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDAL 70
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 43-125 1.14e-08

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.44  E-value: 1.14e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        43 ASAWYNLGNAYYKQGDYQKAIEYYQKALEL--DPNN-AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGN 119
Cdd:PRK02603  35 AFVYYRDGMSAQADGEYAEALENYEEALKLeeDPNDrSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114


                 ....*.
3KD7_B       120 AKQKQG 125
Cdd:PRK02603 115 IYHKRG 120
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 6-120 1.67e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 1.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGN 85
Cdd:TIGR02917  19 DQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAR 98

                          90       100       110
                  ....*....|....*....|....*....|....*.
3KD7_B         86 AYYKQGDYQKAIEDYQKALELD-PNNAKAKQNLGNA 120
Cdd:TIGR02917  99 AYLLQGKFQQVLDELPGKTLLDdEGAAELLALRGLA 134
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 20-104 2.16e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.85  E-value: 2.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         20 YKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIED 99
Cdd:TIGR02917 814 YLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893


                  ....*
3KD7_B        100 YQKAL 104
Cdd:TIGR02917 894 LDKLL 898
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 35-109 2.28e-08

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 50.66  E-value: 2.28e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3KD7_B        35 ALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Cdd:PRK11189  90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-125 2.34e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.85  E-value: 2.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK-----AWYrrgnayY 88
Cdd:TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVvlnnlAWL------Y 814

                          90       100       110
                  ....*....|....*....|....*....|....*..
3KD7_B         89 KQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02917 815 LELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKG 851
TPR_11 pfam13414
TPR repeat;
84-125 3.07e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 46.31  E-value: 3.07e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
3KD7_B         84 GNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 43-75 3.45e-08

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 45.98  E-value: 3.45e-08
                          10        20        30
                  ....*....|....*....|....*....|...
3KD7_B         43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 9-41 5.24e-08

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 45.59  E-value: 5.24e-08
                          10        20        30
                  ....*....|....*....|....*....|...
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN 41
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-125 5.97e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.14  E-value: 5.97e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       28 AIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELdPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
Cdd:COG4785  25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103

                        90
                ....*....|....*...
3KD7_B      108 PNNAKAKQNLGNAKQKQG 125
Cdd:COG4785 104 PDLAEAYNNRGLAYLLLG 121
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 77-109 7.55e-08

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 45.21  E-value: 7.55e-08
                          10        20        30
                  ....*....|....*....|....*....|...
3KD7_B         77 AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 21-103 8.76e-08

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 46.09  E-value: 8.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         21 KQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAlELDPNNAKAWYRRGNAYYKQGDYQKAIEDY 100
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKA-KLNGSSLGCRYLFAQCLLKLKKYDEALDAL 79


                  ...
3KD7_B        101 QKA 103
Cdd:pfam12895  80 GKA 82
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 7-110 8.76e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.21  E-value: 8.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          7 NSAEAWKNLGNAYYKQG----------DYQKAIEYYQKAL---ELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELD 73
Cdd:TIGR00990 282 DSNELDEETGNGQLQLGlkspeskadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361

                          90       100       110
                  ....*....|....*....|....*....|....*..
3KD7_B         74 PNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Cdd:TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 22-125 9.84e-08

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 48.75  E-value: 9.84e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKA-WYRRGNAYYKQGDYQKAIEDY 100
Cdd:COG3071  29 EGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATL 108

                        90       100
                ....*....|....*....|....*
3KD7_B      101 QKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG3071 109 EALRAGAPRHPQVLRLLLQAYRQLG 133
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 15-117 9.89e-08

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 48.31  E-value: 9.89e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       15 LGNAYYKQGDYQKAIEYYQKALELDPNN---ASAWYNLGNAYYKQGDYQKAIEYYQKALElDPNNAKAWYRRGNAYYKQG 91
Cdd:COG2976  96 LAKAAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVLLAQKKYDEALATLDAVKP-EAFAALYAELRGDILLAQG 174

                        90       100
                ....*....|....*....|....*.
3KD7_B       92 DYQKAIEDYQKALELDPNNAKAKQNL 117
Cdd:COG2976 175 DKAEARAAYQKALAALPEDAPLRQLL 200
PRK10370 PRK10370
formate-dependent nitrite reductase complex subunit NrfG; Provisional
 5-106 1.21e-07

formate-dependent nitrite reductase complex subunit NrfG; Provisional


Pssm-ID: 182415 [Multi-domain]  Cd Length: 198  Bit Score: 47.97  E-value: 1.21e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         5 PGNSaEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNA-YYKQGDYQKAI--EYYQKALELDPNNAKAWY 81
Cdd:PRK10370  70 PQNS-EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVlYYQAGQHMTPQtrEMIDKALALDANEVTALM 148

                         90       100
                 ....*....|....*....|....*
3KD7_B        82 RRGNAYYKQGDYQKAIEDYQKALEL 106
Cdd:PRK10370 149 LLASDAFMQADYAQAIELWQKVLDL 173
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 9-72 1.51e-07

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 46.91  E-value: 1.51e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
3KD7_B           9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALEL 72
Cdd:smart01043  61 LEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
ycf3 CHL00033
photosystem I assembly protein Ycf3
 4-116 2.94e-07

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 46.54  E-value: 2.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGdyQKAIEyyqkalELDPNNAKAWYRR 83
Cdd:CHL00033  67 DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG--EQAIE------QGDSEIAEAWFDQ 138

                         90       100       110
                 ....*....|....*....|....*....|...
3KD7_B        84 GNAYYKQgdyqkaiedyqkALELDPNNAKAKQN 116
Cdd:CHL00033 139 AAEYWKQ------------AIALAPGNYIEAQN 159
TPR_19 pfam14559
Tetratricopeptide repeat;
56-115 3.81e-07

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 44.11  E-value: 3.81e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         56 QGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 24-109 7.37e-07

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 44.19  E-value: 7.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         24 DYQKAIEYYQKALELdPNNASAWYNLGNAYYKQ-GDYQKAIEYYQKALELDPNNAKAW--------YRRGNAYYKQGDYQ 94
Cdd:pfam20308   1 DYDAAVELLEALLAL-PEDARAQEQLALALARLpGDRDEALDVLEDLIERLGEDPETLgllgriykRLWLESAEDREALD 79

                          90
                  ....*....|....*
3KD7_B         95 KAIEDYQKALELDPN 109
Cdd:pfam20308  80 QAIEAYRKAFELDPD 94
TPR_8 pfam13181
Tetratricopeptide repeat;
43-75 8.94e-07

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 42.38  E-value: 8.94e-07
                          10        20        30
                  ....*....|....*....|....*....|...
3KD7_B         43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 2-119 1.12e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.70  E-value: 1.12e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        2 AMDPgNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN-NASAWYNLGnayykQ-GDYQKAIEYYQKALE-----LDP 74
Cdd:cd24142  28 ELEP-NNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLG-----QlSGGEEALQYYEKGIEileeeLQA 101

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
3KD7_B       75 NNAKAWYRRGNAYYKQGDYQKA----IEDY------------------QKALELDPNNAKAKQNLGN 119
Cdd:cd24142 102 LQAASAEAEEEAEELKRKLSSAlcalAEIYmtdlcdepdaeqrceeliTKALELDPTNPEALQTLAS 168
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
27-113 1.26e-06

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 45.61  E-value: 1.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        27 KAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Cdd:PRK12370 322 KAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL 401


                 ....*..
3KD7_B       107 DPNNAKA 113
Cdd:PRK12370 402 DPTRAAA 408
TPR_17 pfam13431
Tetratricopeptide repeat;
31-64 1.41e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 41.76  E-value: 1.41e-06
                          10        20        30
                  ....*....|....*....|....*....|....
3KD7_B         31 YYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR COG0790
TPR repeat [General function prediction only];
7-120 1.70e-06

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 45.30  E-value: 1.70e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        7 NSAEAWKNLGNAYYK----QGDYQKAIEYYQKALELdpNNASAWYNLGNAYYK----QGDYQKAIEYYQKALELdpNNAK 78
Cdd:COG0790  97 GDAEAQYNLGLMYEEglgvPQDYAKALEWYEKAAEQ--GDADAQYNLGLLYLNgegvPKDPAKAAEWYRKAAEQ--GDAD 172

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
3KD7_B       79 AWYRRGNAYYK----QGDYQKAIEDYQKALELdpNNAKAKQNLGNA 120
Cdd:COG0790 173 AQYNLGVLYENgrgvPKDPAKALEWYRKAAEQ--GDADAQYNLGRL 216
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 27-125 1.78e-06

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 45.20  E-value: 1.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        27 KAIEY------YQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDY 100
Cdd:NF033758  64 KAFDYpslerkFKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALY 143

                         90       100
                 ....*....|....*....|....*
3KD7_B       101 QKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:NF033758 144 QDVLKRYPDDASSRARLAEIYRQTG 168
TPR_7 pfam13176
Tetratricopeptide repeat;
45-73 2.20e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 41.37  E-value: 2.20e-06
                          10        20
                  ....*....|....*....|....*....
3KD7_B         45 AWYNLGNAYYKQGDYQKAIEYYQKALELD 73
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALA 29
TPR COG0790
TPR repeat [General function prediction only];
2-120 4.04e-06

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 44.15  E-value: 4.04e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        2 AMDPGNSAEAWKNLGNAYYK----QGDYQKAIEYYQKALELdpNNASAWYNLGNAYYK----QGDYQKAIEYYQKALELd 73
Cdd:COG0790  56 AAAAAGGAEAQYNLGLMYAEgrgvPKDYEKALEWFEKAAEQ--GDAEAQYNLGLMYEEglgvPQDYAKALEWYEKAAEQ- 132

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
3KD7_B       74 pNNAKAWYRRGNAYYK----QGDYQKAIEDYQKALELdpNNAKAKQNLGNA 120
Cdd:COG0790 133 -GDADAQYNLGLLYLNgegvPKDPAKAAEWYRKAAEQ--GDADAQYNLGVL 180
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 53-125 4.48e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 4.48e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3KD7_B         53 YYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:TIGR02917  32 YLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG 104
TPR_7 pfam13176
Tetratricopeptide repeat;
11-39 5.31e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.60  E-value: 5.31e-06
                          10        20
                  ....*....|....*....|....*....
3KD7_B         11 AWKNLGNAYYKQGDYQKAIEYYQKALELD 39
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALA 29
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 19-106 5.94e-06

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 43.84  E-value: 5.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         19 YYKQGDYQKAIEYYQKALELDPNN-----ASAWYNLGNAYYKQGDYQKAIEYYQKALEL----DPNNAKAW--YRRGNAY 87
Cdd:pfam17874  11 AISKGDAERALELAEQALALLPEDdllarGLATFVLGEAYLCLGDLDAALQAMREAEALarraDSPHVTLWalLQQGEIL 90

                          90
                  ....*....|....*....
3KD7_B         88 YKQGDYQKAIEDYQKALEL 106
Cdd:pfam17874  91 RAQGRLHQALETYQQALQL 109
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 2-78 6.20e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.62  E-value: 6.20e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3KD7_B         2 AMDPgNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK 78
Cdd:PLN03088  30 DLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105
TPR_14 pfam13428
Tetratricopeptide repeat;
9-52 6.76e-06

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 40.48  E-value: 6.76e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNA 52
Cdd:pfam13428   1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
TPR_17 pfam13431
Tetratricopeptide repeat;
65-98 7.85e-06

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 39.83  E-value: 7.85e-06
                          10        20        30
                  ....*....|....*....|....*....|....
3KD7_B         65 YYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-107 8.05e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 43.43  E-value: 8.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          2 AMDPGNSaEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Cdd:TIGR00990 393 KLNSEDP-DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN 471

                          90       100
                  ....*....|....*....|....*.
3KD7_B         82 RRGNAYYKQGDYQKAIEDYQKALELD 107
Cdd:TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELE 497
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 20-98 9.41e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.98  E-value: 9.41e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       20 YKQGDYQKAIEYYQKALELDPNNASA-WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98
Cdd:COG3071  61 QALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLE 140
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 23-120 9.44e-06

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 43.36  E-value: 9.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        23 GDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNnAKAWYRRGNAYYKQGDYQKAIEDYQK 102
Cdd:PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRA 634

                         90
                 ....*....|....*...
3KD7_B       103 ALELDPNNAKAKQNLGNA 120
Cdd:PRK09782 635 ALELEPNNSNYQAALGYA 652
TPR_8 pfam13181
Tetratricopeptide repeat;
77-109 1.32e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 39.30  E-value: 1.32e-05
                          10        20        30
                  ....*....|....*....|....*....|...
3KD7_B         77 AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 14-105 1.35e-05

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 42.54  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         14 NLGNAYYKQGDYQKAIEYYQKALELDPNN---ASAWYNLGNAYYKQ--------GDYQKAIEYYQKALELDPN-----NA 77
Cdd:TIGR03302  75 DLAYAYYKSGDYAEAIAAADRFIRLHPNHpdaDYAYYLRGLSNYNQidrvdrdqTAAREAFEAFQELIRRYPNseyapDA 154

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
3KD7_B         78 KAWYRR------------GNAYYKQGDYQKAIEDYQKALE 105
Cdd:TIGR03302 155 KKRMDYlrnrlagkelyvARFYLKRGAYVAAINRFQTVVE 194
TPR_14 pfam13428
Tetratricopeptide repeat;
45-86 1.39e-05

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 39.71  E-value: 1.39e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
3KD7_B         45 AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Cdd:pfam13428   3 ALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 49-106 1.56e-05

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 41.52  E-value: 1.56e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
3KD7_B          49 LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Cdd:smart01043  67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
TPR COG0790
TPR repeat [General function prediction only];
6-106 1.72e-05

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.22  E-value: 1.72e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        6 GNSAEAWKNLGNAYYK----QGDYQKAIEYYQKALELdpNNASAWYNLGNAYYK----QGDYQKAIEYYQKALELdpNNA 77
Cdd:COG0790 132 QGDADAQYNLGLLYLNgegvPKDPAKAAEWYRKAAEQ--GDADAQYNLGVLYENgrgvPKDPAKALEWYRKAAEQ--GDA 207

                        90       100       110
                ....*....|....*....|....*....|...
3KD7_B       78 KAWYRRGNAYYK----QGDYQKAIEDYQKALEL 106
Cdd:COG0790 208 DAQYNLGRLYLNgegvEKDLEKALRWLRKAAEQ 240
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 22-96 2.54e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 41.99  E-value: 2.54e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
3KD7_B         22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKA 96
Cdd:PRK11447  616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAA 690
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
 20-92 3.60e-05

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 41.16  E-value: 3.60e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
3KD7_B         20 YKQGDYQKAIEYYQKALELDPNN---ASAWYNLGNAYYKQGDYQKAIEYYQKALELDP---NNAKAWYRRGNAYYKQGD 92
Cdd:pfam13525  15 LQKGDYGDAIKKLEALDNRYPFSpyaEQAQLDLIYAYYKDADYADALAAAERFLRLYPthpNIDYVYYMRGLSNFAQDR 93
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 16-92 3.77e-05

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 41.08  E-value: 3.77e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       16 GNAYYKQGDYQKAIEYYQKA---LELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK---AWYRRGNAYYK 89
Cdd:cd15830  10 AQTALQKGNYDGAIKYLEALdsrYPFGPYAEQAQLDLIYAYYKNADYELALASAERFIRLYPRHPNidyVYYMRGLSNYK 89


                ...
3KD7_B       90 QGD 92
Cdd:cd15830  90 LDR 92
TPR_8 pfam13181
Tetratricopeptide repeat;
9-41 4.52e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 37.76  E-value: 4.52e-05
                          10        20        30
                  ....*....|....*....|....*....|...
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN 41
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 2-111 1.28e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 40.07  E-value: 1.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          2 AMDPGNSAeAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQ------------------------- 56
Cdd:PRK11447  379 QVDNTDSY-AVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQspekalafiaslsasqrrsiddier 457

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
3KD7_B         57 -----------------GDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111
Cdd:PRK11447  458 slqndrlaqqaealenqGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 26-101 1.32e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.92  E-value: 1.32e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
3KD7_B       26 QKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELdpnnakaWYRRGNAYYKQGDYQKAIEDYQ 101
Cdd:cd24142 143 QRCEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL-------WKDLKEEDEEEAEEDEAEEEDV 211
TPR_10 pfam13374
Tetratricopeptide repeat;
48-72 3.00e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 35.94  E-value: 3.00e-04
                          10        20
                  ....*....|....*....|....*
3KD7_B         48 NLGNAYYKQGDYQKAIEYYQKALEL 72
Cdd:pfam13374   7 NLANALRAQGRYDEAEELLEEALAI 31
TPR_10 pfam13374
Tetratricopeptide repeat;
14-38 3.00e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 35.94  E-value: 3.00e-04
                          10        20
                  ....*....|....*....|....*
3KD7_B         14 NLGNAYYKQGDYQKAIEYYQKALEL 38
Cdd:pfam13374   7 NLANALRAQGRYDEAEELLEEALAI 31
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 2-77 4.35e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 38.25  E-value: 4.35e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3KD7_B         2 AMDPgNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNAS-AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNA 77
Cdd:PRK11788 208 AADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSeVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283
TPR_12 pfam13424
Tetratricopeptide repeat;
7-41 5.34e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 5.34e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN 41
Cdd:pfam13424  43 LTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 22-115 5.92e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 37.94  E-value: 5.92e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       22 QGDYQKAIEYYQKALELDPNNASAW-----------------YNLGNAYYKQGDYQKAIEYYQKALELDPN---NAKAWY 81
Cdd:COG4105 127 QTSTRKAIEAFQELINRYPDSEYAEdakkridelrdklarkeLEVARYYLKRGAYVAAINRFQNVLEDYPDtpaVEEALY 206

                        90       100       110
                ....*....|....*....|....*....|....
3KD7_B       82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Cdd:COG4105 207 LLVEAYYALGRYDEAQDAAAVLGKNYPDSPYLKD 240
ycf3 CHL00033
photosystem I assembly protein Ycf3
 43-117 7.08e-04

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 37.29  E-value: 7.08e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
3KD7_B        43 ASAWYNLGNAYYKQGDYQKAIEYYQKA--LELDP-NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Cdd:CHL00033  35 AFTYYRDGMSAQSEGEYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 15-69 7.55e-04

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 36.08  E-value: 7.55e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
3KD7_B         15 LGNAYYKQGDYQKAIEYYQKAlELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Cdd:pfam12895  29 LAQCLFLNGQYKRAYELLRKA-KLNGSSLGCRYLFAQCLLKLKKYDEALDALGKA 82
RNPP_C pfam18768
RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor ...
 15-104 1.08e-03

RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor includes five TPR units of different lengths. This entry represents the TPR containing domain as a whole. This family is called RNPP after (Rapm NprR, PrgX, and PlcR).


Pssm-ID: 436723  Cd Length: 213  Bit Score: 37.12  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAW--------YNLGNAYYKQGDYQKAIEYYQKALELDPNNA------KAW 80
Cdd:pfam18768  85 LANLYAEEGKTNQSIQYYQQVITSSEANELDYdvlkikvmYNYSKLLYDKNDYDSSLEVINQGIASSIEKEnmsllgQLY 164

                          90       100
                  ....*....|....*....|....*
3KD7_B         81 YRRGNAYYK-QGDYQKAIEDYQKAL 104
Cdd:pfam18768 165 YQRGECLEKlDGSEEEIAESYQRAL 189
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 8-70 1.09e-03

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 37.17  E-value: 1.09e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3KD7_B         8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN---NASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Cdd:PLN03098  74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNpdeAQAAYYNKACCHAYREEGKKAADCLRTAL 139
TPR_14 pfam13428
Tetratricopeptide repeat;
77-120 1.15e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 34.71  E-value: 1.15e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
3KD7_B         77 AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Cdd:pfam13428   1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 2-75 1.36e-03

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 35.71  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          2 AMDPGNSAEAWKNLGNAYYKQ-GDYQKAIEYYQKALELDPNNASAWYNLGNAY--------YKQGDYQKAIEYYQKALEL 72
Cdd:pfam20308  12 LLALPEDARAQEQLALALARLpGDRDEALDVLEDLIERLGEDPETLGLLGRIYkrlwlesaEDREALDQAIEAYRKAFEL 91


                  ...
3KD7_B         73 DPN 75
Cdd:pfam20308  92 DPD 94
PRK10370 PRK10370
formate-dependent nitrite reductase complex subunit NrfG; Provisional
 26-113 1.48e-03

formate-dependent nitrite reductase complex subunit NrfG; Provisional


Pssm-ID: 182415 [Multi-domain]  Cd Length: 198  Bit Score: 36.42  E-value: 1.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        26 QKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA-YYKQGDYQKAI--EDYQK 102
Cdd:PRK10370  56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVlYYQAGQHMTPQtrEMIDK 135

                         90
                 ....*....|.
3KD7_B       103 ALELDPNNAKA 113
Cdd:PRK10370 136 ALALDANEVTA 146
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
 6-69 1.50e-03

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 36.88  E-value: 1.50e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
3KD7_B          6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNnASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Cdd:TIGR00540 305 PDDALLLLALGRLCLRQQLWGKAQSYLEASLSLAPT-EEAHLELAQLFEQLGDTEAAAQHYRKS 367
HemYx COG3898
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ...
 21-108 1.54e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];


Pssm-ID: 443105 [Multi-domain]  Cd Length: 468  Bit Score: 36.79  E-value: 1.54e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       21 KQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE---LDPNNAKawyRR------GNAYYK-Q 90
Cdd:COG3898 164 RRGDTEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGALATLDAALKaglLDKDVAR---RRravlltARARELeE 240

                        90
                ....*....|....*...
3KD7_B       91 GDYQKAIEDYQKALELDP 108
Cdd:COG3898 241 GDPDEARELAIEALKLAP 258
PRK14720 PRK14720
transcription elongation factor GreA;
19-117 2.12e-03

transcription elongation factor GreA;


Pssm-ID: 184804 [Multi-domain]  Cd Length: 906  Bit Score: 36.67  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        19 YYKQGDYQKAIEYYQKALELDPNNA------SAWYNLGNAYYKQGDYQKAIEyyQKAL-ELDPNNAKAWYRRGNAYYKQ- 90
Cdd:PRK14720 159 SYEEEDKEKAITYLKKAIYRFIKKKqyvgieEIWSKLVHYNSDDFDFFLRIE--RKVLgHREFTRLVGLLEDLYEPYKAl 236

                         90       100
                 ....*....|....*....|....*..
3KD7_B        91 GDYQKAIEDYQKALELDPNNAKAKQNL 117
Cdd:PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREEL 263
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 37-104 2.61e-03

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 36.40  E-value: 2.61e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
3KD7_B        37 ELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK---AWYRRGNAYYKQGDYQKAIEDYQKAL 104
Cdd:PLN03098  69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEaqaAYYNKACCHAYREEGKKAADCLRTAL 139
SPO22 pfam08631
Meiosis protein SPO22/ZIP4 like; SPO22/ZIP4 in yeast is a meiosis specific protein involved in ...
 21-72 2.61e-03

Meiosis protein SPO22/ZIP4 like; SPO22/ZIP4 in yeast is a meiosis specific protein involved in sporulation. It has been shown to regulate crossover distribution by promoting synaptonemal complex formation.


Pssm-ID: 462542  Cd Length: 273  Bit Score: 36.12  E-value: 2.61e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
3KD7_B         21 KQGDYQKAIEYYQKALE-----LDPNN----ASAWYNLGNAYYKQGDYQKAIEYYQKALEL 72
Cdd:pfam08631   4 KQGDLDLAEHMLSKACEdnllrLDPETaeelARLLYNIGKSLLSKRKYEEAIKWLQRAYDI 64
DUF2989 pfam11207
Protein of unknown function (DUF2989); Some members in this bacterial family of proteins are ...
 19-62 2.87e-03

Protein of unknown function (DUF2989); Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.


Pssm-ID: 431727  Cd Length: 201  Bit Score: 35.74  E-value: 2.87e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
3KD7_B         19 YYKQGDYQKAIEYYQKALEL----DPNNASAWYNLGNAYYKQGDYQKA 62
Cdd:pfam11207 149 FYTKRDPAKAIKLLLHVLELsnkdDKVNPEILLSLASIYHKLKQYEKA 196
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 14-71 2.98e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 36.05  E-value: 2.98e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
3KD7_B        14 NLGNAYYKQGDYQKAIEYYQKALEL--------DPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Cdd:NF040586 525 NLAVSLRLLGDYREALELDREVLRRrrrvlgpdHPRTLLSANNLARDLRELGRYAEALDLLEEALE 590
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 3-96 3.23e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 35.68  E-value: 3.23e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        3 MDPGNsAEAWKNLGNAYYKQGDYQKAIEYYQKALELdpnnasaWYNLGNAYYKQGDYQKA-------------------- 62
Cdd:cd24142 155 LDPTN-PEALQTLASLRISQQRPDEAKEALRRSLEL-------WKDLKEEDEEEAEEDEAeeedvpsyefrislakllie 226

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
3KD7_B       63 IEYYQKALEL-------DPNNAKAWYRRGNAYYKQGDYQKA 96
Cdd:cd24142 227 LEMYEEALEVleqlldeDDEDVEVWYLLGWAYYLLGEKEQE 267
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 24-125 3.38e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 35.32  E-value: 3.38e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       24 DYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103
Cdd:COG5010   1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                        90       100
                ....*....|....*....|..
3KD7_B      104 LELDPNNAKAKQNLGNAKQKQG 125
Cdd:COG5010  81 LQLDPNNPELYYNLALLYSRSG 102
TPR_7 pfam13176
Tetratricopeptide repeat;
79-107 3.40e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 32.90  E-value: 3.40e-03
                          10        20
                  ....*....|....*....|....*....
3KD7_B         79 AWYRRGNAYYKQGDYQKAIEDYQKALELD 107
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALA 29
SNAP pfam14938
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...
 13-109 3.66e-03

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.


Pssm-ID: 405606 [Multi-domain]  Cd Length: 273  Bit Score: 35.62  E-value: 3.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         13 KNLGNAYYKQ-GDYQKAIEYYQKALEL---DPNNASAwynlgNAYYKQ--------GDYQKAIEYYQKALELDPNNAKAW 80
Cdd:pfam14938 110 KEIAELYEQElGDLEKAIEAYEQAADWyegEGASALA-----NKCYLKvadlsaelEDYPKAIEIYEKVAKNSLENNLLK 184

                          90       100       110
                  ....*....|....*....|....*....|....*.
3KD7_B         81 YRRGNAYYK-------QGDYQKAIEDYQKALELDPN 109
Cdd:pfam14938 185 YSVKEYFLKaglchlaAGDLVAAQRALERYEELDPS 220
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 6-106 4.06e-03

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 35.63  E-value: 4.06e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B        6 GNSAEAWKNLGNAY--YKQGDYQKAIEYYQKALELDPNN------ASAWYNLGNAYYKQ-GDYQKAIEYYQKALEL---D 73
Cdd:cd15832  66 DSKHDAANAYVEAAkcYKKVDPQEAVNCLEKAIEIYTEMgrfrqaAKHLKEIAELYENElGDLDKAIEAYEQAADYyegE 145

                        90       100       110
                ....*....|....*....|....*....|...
3KD7_B       74 PNNAKAwyrrGNAYYKQGDYQKAIEDYQKALEL 106
Cdd:cd15832 146 GANSLA----NKCYLKVADLAAQLEDYDKAIEI 174
TPR_9 pfam13371
Tetratricopeptide repeat;
7-45 4.29e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 33.73  E-value: 4.29e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASA 45
Cdd:pfam13371  27 DDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 6-103 4.58e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 35.66  E-value: 4.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         6 GNSAEAWKnLGNAYYKQGDYQKAIEYYQKALELDPNnASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGN 85
Cdd:PRK09782 574 GDNALYWW-LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651

                         90
                 ....*....|....*...
3KD7_B        86 AYYKQGDYQKAIEDYQKA 103
Cdd:PRK09782 652 ALWDSGDIAQSREMLERA 669
TOM20_plant pfam06552
Plant specific mitochondrial import receptor subunit TOM20; This family consists of several ...
 26-106 4.63e-03

Plant specific mitochondrial import receptor subunit TOM20; This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.


Pssm-ID: 284068 [Multi-domain]  Cd Length: 187  Bit Score: 35.26  E-value: 4.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         26 QKAIEYYQKALELDPNNASAWYNLGNAYYKQG-----------DYQKAIEYYQKALELDPNNAKawyrrgnayykqgdYQ 94
Cdd:pfam06552  52 QDAISKLEEALTIDPKKHDALWCIGNAYTSHAfltpdpteakeNFDKATQFFQQAVDEQPDNDL--------------YR 117

                          90
                  ....*....|..
3KD7_B         95 KAIEDYQKALEL 106
Cdd:pfam06552 118 KSLEMAAKAPEL 129
TPR_6 pfam13174
Tetratricopeptide repeat;
45-75 4.90e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 32.44  E-value: 4.90e-03
                          10        20        30
                  ....*....|....*....|....*....|.
3KD7_B         45 AWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Cdd:pfam13174   2 ALLKLALAYLELGDTDEAKEALERLIKKYPD 32
SNAP pfam14938
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...
 4-106 5.08e-03

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.


Pssm-ID: 405606 [Multi-domain]  Cd Length: 273  Bit Score: 35.24  E-value: 5.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          4 DPGNSAEAWKNLGNAYyKQGDYQKAIEYYQKALEL-----DPNNASAWY-NLGNAYYKQ-GDYQKAIEYYQKALEL---D 73
Cdd:pfam14938  62 SKDEAANAYVEAAKCY-KKVDPEEAVRALEKAIEIytemgRFRRAAKHKkEIAELYEQElGDLEKAIEAYEQAADWyegE 140

                          90       100       110
                  ....*....|....*....|....*....|...
3KD7_B         74 PNNAKAwyrrGNAYYKQGDYQKAIEDYQKALEL 106
Cdd:pfam14938 141 GASALA----NKCYLKVADLSAELEDYPKAIEI 169
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 14-106 5.66e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 34.98  E-value: 5.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         14 NLGNAYYKQGDYQKAIEYYQKALEL----DPNNASAW--YNLGNAYYKQGDYQKAIEYYQKALEL--------DPNNAKA 79
Cdd:pfam17874  45 VLGEAYLCLGDLDAALQAMREAEALarraDSPHVTLWalLQQGEILRAQGRLHQALETYQQALQLardhglqhLPLHGFL 124

                          90       100
                  ....*....|....*....|....*..
3KD7_B         80 WYRRGNAYYKQGDYQKAIEDYQKALEL 106
Cdd:pfam17874 125 LVGLADLLYEWNDLEEAEQHAQQGIQL 151
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 9-43 5.67e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 33.08  E-value: 5.67e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNA 43
Cdd:pfam13432  34 AAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
RPN7 pfam10602
26S proteasome subunit RPN7; RPN7 (known as the non ATPase regulatory subunit 6 in higher ...
 9-106 5.68e-03

26S proteasome subunit RPN7; RPN7 (known as the non ATPase regulatory subunit 6 in higher eukaryotes) is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae to be required for structural integrity. The 26S proteasome is is involved in the ATP-dependent degradation of ubiquitinated proteins.


Pssm-ID: 431387  Cd Length: 174  Bit Score: 34.86  E-value: 5.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B          9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN---NASAWYNLGNAYYKQGDYQKAIEYYQKALELdPNNAKAWYRRgn 85
Cdd:pfam10602  36 RMANLDLAEHYAKIGDLENALKAYERAREYCTSlghKIDMCLNLIRVGIFFNDWDLVSKYIEKAKSL-IEKGGDWERR-- 112

                          90       100
                  ....*....|....*....|...
3KD7_B         86 AYYK--QGDYQKAIEDYQKALEL 106
Cdd:pfam10602 113 NRLKvyEGLALLAIRDFKEAAKL 135
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 56-125 7.73e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 35.06  E-value: 7.73e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B         56 QGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Cdd:PRK11447  616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 25-72 8.97e-03

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 34.63  E-value: 8.97e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
3KD7_B       25 YQKAIEYYQKALELDPNN------ASAWYNLGNAYYKQGDYQKAIEYYQKALEL 72
Cdd:cd24145 235 AQKALDVAKSIKPKDRDPecdqacALALYNLGVIAEMLGNLDEARKLYKEAISL 288
Coatomer_WDAD pfam04053
Coatomer WD associated region; This region is composed of WD40 repeats.
 7-66 9.21e-03

Coatomer WD associated region; This region is composed of WD40 repeats.


Pssm-ID: 427679  Cd Length: 439  Bit Score: 34.52  E-value: 9.21e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
3KD7_B          7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDP--------NNASAWYNLGNAYYKQGDYQKAIEYY 66
Cdd:pfam04053 341 DDPAKWKRLGDAALSQGNIKLAEEAYQKAKDFDKllllylstGNMEKLKKLAKIAEKRGDYNSAFQNA 408
BET4 COG5536
Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, ...
 24-106 9.52e-03

Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227823 [Multi-domain]  Cd Length: 328  Bit Score: 34.46  E-value: 9.52e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3KD7_B       24 DYQKAIEYYQKALELDPNNASAWYNLGNAYYK---------QGDYQKAIEYYQKALELDPNNAKAW-YRRG---NAYYKQ 90
Cdd:COG5536 165 DLKHELEYTTSLIETDIYNNSAWHHRYIWIERrfnrgdvisQKYLEKELEYIFDKIFTDPDNQSVWgYLRGvssEFATDI 244

                        90
                ....*....|....*.
3KD7_B       91 GDYQKAIEDYQKALEL 106
Cdd:COG5536 245 VMIGEKVEDLGKYIVI 260
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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