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Conserved domains on  [gi|203282477|pdb|3DLL|U]
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Chain U, 50S ribosomal protein L28

Protein Classification

50S ribosomal protein L28( domain architecture ID 10015403)

50S ribosomal protein bL28

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
L28 TIGR00009
ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ...
 1-69 1.35e-11

ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]


:

Pssm-ID: 272851  Cd Length: 56  Bit Score: 53.80  E-value: 1.35e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3DLL_U         1 MSRECYLTGKKNLVVNSVIrrgkaradggvgrKTTGITKRVQRANLHKKAIRENGQVKTVWLSANALRT 69
Cdd:TIGR00009  1 MSRKCELTGKGPLSGNNVS-------------HSHRKTKRRFKPNLQKKRVWVPGRFKRLRVSAKCLRT 56
 
Name Accession Description Interval E-value
L28 TIGR00009
ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ...
 1-69 1.35e-11

ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272851  Cd Length: 56  Bit Score: 53.80  E-value: 1.35e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3DLL_U         1 MSRECYLTGKKNLVVNSVIrrgkaradggvgrKTTGITKRVQRANLHKKAIRENGQVKTVWLSANALRT 69
Cdd:TIGR00009  1 MSRKCELTGKGPLSGNNVS-------------HSHRKTKRRFKPNLQKKRVWVPGRFKRLRVSAKCLRT 56
RpmB COG0227
Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 ...
 1-72 2.81e-11

Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439997  Cd Length: 68  Bit Score: 53.17  E-value: 2.81e-11
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3DLL_U       1 MSRECYLTGKKNLVVNSVIRRGKAradggvgrkttgiTKRVQRANLHKKAIREN-GQVKTVWLSANALRTLSK 72
Cdd:COG0227  1 MSRVCEITGKGPMFGNNVSHSNRK-------------TKRRFLPNLQKVRVWVDsGRPVRLRVSTRCLRTIDK 60
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
 3-70 6.21e-06

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


Pssm-ID: 459953  Cd Length: 58  Bit Score: 39.29  E-value: 6.21e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3DLL_U         3 RECYLTGKKNLVVNSVirrgkaradggvgRKTTGITKRVQRANLHKKAI--RENGQVKTVWLSANALRTL 70
Cdd:pfam00830  1 RRCGLTGKGPQFGNNV-------------SHSKNKTKRRWKPNLQKKRLwsEELGRFVRLRVSTRALRTI 57
 
Name Accession Description Interval E-value
L28 TIGR00009
ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ...
 1-69 1.35e-11

ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272851  Cd Length: 56  Bit Score: 53.80  E-value: 1.35e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
3DLL_U         1 MSRECYLTGKKNLVVNSVIrrgkaradggvgrKTTGITKRVQRANLHKKAIRENGQVKTVWLSANALRT 69
Cdd:TIGR00009  1 MSRKCELTGKGPLSGNNVS-------------HSHRKTKRRFKPNLQKKRVWVPGRFKRLRVSAKCLRT 56
RpmB COG0227
Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 ...
 1-72 2.81e-11

Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L28 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439997  Cd Length: 68  Bit Score: 53.17  E-value: 2.81e-11
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3DLL_U       1 MSRECYLTGKKNLVVNSVIRRGKAradggvgrkttgiTKRVQRANLHKKAIREN-GQVKTVWLSANALRTLSK 72
Cdd:COG0227  1 MSRVCEITGKGPMFGNNVSHSNRK-------------TKRRFLPNLQKVRVWVDsGRPVRLRVSTRCLRTIDK 60
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
 3-70 6.21e-06

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


Pssm-ID: 459953  Cd Length: 58  Bit Score: 39.29  E-value: 6.21e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3DLL_U         3 RECYLTGKKNLVVNSVirrgkaradggvgRKTTGITKRVQRANLHKKAI--RENGQVKTVWLSANALRTL 70
Cdd:pfam00830  1 RRCGLTGKGPQFGNNV-------------SHSKNKTKRRWKPNLQKKRLwsEELGRFVRLRVSTRALRTI 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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