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Conserved domains on  [gi|594144468|pdb|2LY3|1]
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Chain 1, Translocation and assembly module TamA

Protein Classification

POTRA_TamA_1 domain-containing protein( domain architecture ID 13879206)

POTRA_TamA_1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
POTRA_TamA_1 pfam17243
POTRA domain TamA domain 1; This family represents the POTRA domain found in the membrane ...
 4-79 6.61e-24

POTRA domain TamA domain 1; This family represents the POTRA domain found in the membrane insertase TamA.


:

Pssm-ID: 435807 [Multi-domain]  Cd Length: 74  Bit Score: 85.73  E-value: 6.61e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
2LY3_1         4 RLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPkkGRQVLIAKVTP 79
Cdd:pfam17243  1 EVEIKGVDGELLDNVRAYLSLLPERDDDGSERLHRQAEEQIRKALQALGYYQPTIEFELEEDD--GCWTLTLTVDP 74
 
Name Accession Description Interval E-value
POTRA_TamA_1 pfam17243
POTRA domain TamA domain 1; This family represents the POTRA domain found in the membrane ...
 4-79 6.61e-24

POTRA domain TamA domain 1; This family represents the POTRA domain found in the membrane insertase TamA.


Pssm-ID: 435807 [Multi-domain]  Cd Length: 74  Bit Score: 85.73  E-value: 6.61e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
2LY3_1         4 RLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPkkGRQVLIAKVTP 79
Cdd:pfam17243  1 EVEIKGVDGELLDNVRAYLSLLPERDDDGSERLHRQAEEQIRKALQALGYYQPTIEFELEEDD--GCWTLTLTVDP 74
TamA COG0729
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ...
 1-80 2.47e-15

Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440493 [Multi-domain]  Cd Length: 574  Bit Score: 69.16  E-value: 2.47e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2LY3_1        1 ANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPD-----RRFRARVDDAIREGLKALGYYQPTIEFDLRPPPkkGRQVLIA 75
Cdd:COG0729  16 APYEVEIDGLDGELRDNLRAHLSLLRLRDEPDLdpaelRRLARADPERIRAALRAEGYYSPTVTIRLDGRD--GPWTVTI 93


                ....*
2LY3_1       76 KVTPG 80
Cdd:COG0729  94 TVDPG 98
 
Name Accession Description Interval E-value
POTRA_TamA_1 pfam17243
POTRA domain TamA domain 1; This family represents the POTRA domain found in the membrane ...
 4-79 6.61e-24

POTRA domain TamA domain 1; This family represents the POTRA domain found in the membrane insertase TamA.


Pssm-ID: 435807 [Multi-domain]  Cd Length: 74  Bit Score: 85.73  E-value: 6.61e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
2LY3_1         4 RLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPkkGRQVLIAKVTP 79
Cdd:pfam17243  1 EVEIKGVDGELLDNVRAYLSLLPERDDDGSERLHRQAEEQIRKALQALGYYQPTIEFELEEDD--GCWTLTLTVDP 74
TamA COG0729
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ...
 1-80 2.47e-15

Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440493 [Multi-domain]  Cd Length: 574  Bit Score: 69.16  E-value: 2.47e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2LY3_1        1 ANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPD-----RRFRARVDDAIREGLKALGYYQPTIEFDLRPPPkkGRQVLIA 75
Cdd:COG0729  16 APYEVEIDGLDGELRDNLRAHLSLLRLRDEPDLdpaelRRLARADPERIRAALRAEGYYSPTVTIRLDGRD--GPWTVTI 93


                ....*
2LY3_1       76 KVTPG 80
Cdd:COG0729  94 TVDPG 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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