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Conserved domains on  [gi|159163894|pdb|2CRC|A]
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Chain A, Ubiquitin conjugating enzyme 7 interacting protein 3

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 10650940)

zinc finger Ran-binding domain-containing protein; similar to human zinc finger Ran-binding domain-containing protein 2 (ZRANB2) which is a splice factor required for alternative splicing of TRA2B/SFRS10 transcripts and whose zinc finger domains bind single-stranded RNA, and to the zinc finger domain of human TAK1-binding protein 2 (TAB2) which binds Lys 63-linked polyubiquitin chains

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 11-31 9.20e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


:

Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 32.29  E-value: 9.20e-04
                          10        20
                  ....*....|....*....|.
2CRC_A         11 WQCPGCTFINKPTRPGCEMCC 31
Cdd:smart00547  3 WECPACTFLNFASRSKCFACG 23
 
Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 11-31 9.20e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 32.29  E-value: 9.20e-04
                          10        20
                  ....*....|....*....|.
2CRC_A         11 WQCPGCTFINKPTRPGCEMCC 31
Cdd:smart00547  3 WECPACTFLNFASRSKCFACG 23
 
Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 11-31 9.20e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 32.29  E-value: 9.20e-04
                          10        20
                  ....*....|....*....|.
2CRC_A         11 WQCPGCTFINKPTRPGCEMCC 31
Cdd:smart00547  3 WECPACTFLNFASRSKCFACG 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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