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Conserved domains on  [gi|40889664|pdb|1RJJ|A]
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Chain A, expressed protein

Protein Classification

Dabb family protein( domain architecture ID 10545277)

Dabb (dimeric A/B barrel) family protein similar to Arabidopsis thaliana stress-response A/B barrel domain-containing proteins and Passiflora edulis hydroxynitrile lyase

CATH:  3.30.70.100
SCOP:  4000637

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 7-100 2.29e-24

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


:

Pssm-ID: 400293  Cd Length: 96  Bit Score: 88.50  E-value: 2.29e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1RJJ_A          7 KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDmlRQGFTHAFSMTFENKDGYVAFTSHPLHVEFS 83
Cdd:pfam07876   2 KHIVLFKLKDDAadeEIAEVLEGLEALAGKIPGIKSIEVGRNVSPEG--AQGYDHVLISTFESLEDLKAYLAHPAHVEFV 79

                          90
                  ....*....|....*..
1RJJ_A         84 AAFTAVIDKIVLLDFPV 100
Cdd:pfam07876  80 ELVKPLVEDRVVVDFEV 96
 
Name Accession Description Interval E-value
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 7-100 2.29e-24

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 400293  Cd Length: 96  Bit Score: 88.50  E-value: 2.29e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1RJJ_A          7 KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDmlRQGFTHAFSMTFENKDGYVAFTSHPLHVEFS 83
Cdd:pfam07876   2 KHIVLFKLKDDAadeEIAEVLEGLEALAGKIPGIKSIEVGRNVSPEG--AQGYDHVLISTFESLEDLKAYLAHPAHVEFV 79

                          90
                  ....*....|....*..
1RJJ_A         84 AAFTAVIDKIVLLDFPV 100
Cdd:pfam07876  80 ELVKPLVEDRVVVDFEV 96
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 6-98 2.35e-20

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 214884  Cd Length: 97  Bit Score: 78.48  E-value: 2.35e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1RJJ_A           6 FKHLVVVKFKEDTK---VDEILKGLENLVSQIDTVKSFEWGEDkESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEF 82
Cdd:smart00886   1 IRHIVLFKLKDDASeedIEELLEALEALKGLIPGILSIEVGRN-VSPEGRSGGYDHVLVSEFEDEEDLDAYQVHPAHVAV 79

                           90
                   ....*....|....*..
1RJJ_A          83 SAAFTA-VIDKIVLLDF 98
Cdd:smart00886  80 VERLVPpLAEDRVVVDF 96
 
Name Accession Description Interval E-value
Dabb pfam07876
Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is ...
 7-100 2.29e-24

Stress responsive A/B Barrel Domain; The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 400293  Cd Length: 96  Bit Score: 88.50  E-value: 2.29e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1RJJ_A          7 KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDmlRQGFTHAFSMTFENKDGYVAFTSHPLHVEFS 83
Cdd:pfam07876   2 KHIVLFKLKDDAadeEIAEVLEGLEALAGKIPGIKSIEVGRNVSPEG--AQGYDHVLISTFESLEDLKAYLAHPAHVEFV 79

                          90
                  ....*....|....*..
1RJJ_A         84 AAFTAVIDKIVLLDFPV 100
Cdd:pfam07876  80 ELVKPLVEDRVVVDFEV 96
Dabb smart00886
Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is ...
 6-98 2.35e-20

Stress responsive A/B Barrel Domain; The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.


Pssm-ID: 214884  Cd Length: 97  Bit Score: 78.48  E-value: 2.35e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1RJJ_A           6 FKHLVVVKFKEDTK---VDEILKGLENLVSQIDTVKSFEWGEDkESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEF 82
Cdd:smart00886   1 IRHIVLFKLKDDASeedIEELLEALEALKGLIPGILSIEVGRN-VSPEGRSGGYDHVLVSEFEDEEDLDAYQVHPAHVAV 79

                           90
                   ....*....|....*..
1RJJ_A          83 SAAFTA-VIDKIVLLDF 98
Cdd:smart00886  80 VERLVPpLAEDRVVVDF 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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