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Conserved domains on  [gi|34811247|pdb|1NKN|C]
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Chain C, S2N51-GCN4

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG2433 super family cl43687
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
14-85 3.47e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


The actual alignment was detected with superfamily member COG2433:

Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 34.45  E-value: 3.47e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
1NKN_C       14 EEMKEQLKQMDKMKEDL------AKTERIKKELEEQNVTLLEQKNDlfgsmkQLEDKVEELLSKNYHLENEVARLKKL 85
Cdd:COG2433 430 EELEAELEEKDERIERLerelseARSEERREIRKDREISRLDREIE------RLERELEEERERIEELKRKLERLKEL 501
 
Name Accession Description Interval E-value
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
14-85 3.47e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 34.45  E-value: 3.47e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
1NKN_C       14 EEMKEQLKQMDKMKEDL------AKTERIKKELEEQNVTLLEQKNDlfgsmkQLEDKVEELLSKNYHLENEVARLKKL 85
Cdd:COG2433 430 EELEAELEEKDERIERLerelseARSEERREIRKDREISRLDREIE------RLERELEEERERIEELKRKLERLKEL 501
 
Name Accession Description Interval E-value
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
14-85 3.47e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 34.45  E-value: 3.47e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
1NKN_C       14 EEMKEQLKQMDKMKEDL------AKTERIKKELEEQNVTLLEQKNDlfgsmkQLEDKVEELLSKNYHLENEVARLKKL 85
Cdd:COG2433 430 EELEAELEEKDERIERLerelseARSEERREIRKDREISRLDREIE------RLERELEEERERIEELKRKLERLKEL 501
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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