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Conserved domains on  [gi|21730653|pdb|1L4U|A]
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Chain A, SHIKIMATE KINASE

Protein Classification

shikimate kinase( domain architecture ID 11478131)

shikimate kinase catalyzes the specific phosphorylation of the 3-hydroxylgroup of shikimic acid using ATP as a cosubstrate

CATH:  3.40.50.300
EC:  2.7.1.71
Gene Ontology:  GO:0008652|GO:0009073|GO:0004765|GO:0000287|GO:0005524
PubMed:  2279393|7870841
SCOP:  4003925

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
aroK PRK00131
shikimate kinase; Reviewed
 1-167 4.36e-80

shikimate kinase; Reviewed


:

Pssm-ID: 234654 [Multi-domain]  Cd Length: 175  Bit Score: 235.08  E-value: 4.36e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         1 MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80
Cdd:PRK00131   3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTGG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        81 GAVTSPGVRAAL-AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVV 159
Cdd:PRK00131  83 GAVLREENRALLrERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVV 162


                 ....*...
1L4U_A       160 RHILSRLQ 167
Cdd:PRK00131 163 NEILEKLE 170
 
Name Accession Description Interval E-value
aroK PRK00131
shikimate kinase; Reviewed
 1-167 4.36e-80

shikimate kinase; Reviewed


Pssm-ID: 234654 [Multi-domain]  Cd Length: 175  Bit Score: 235.08  E-value: 4.36e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         1 MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80
Cdd:PRK00131   3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTGG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        81 GAVTSPGVRAAL-AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVV 159
Cdd:PRK00131  83 GAVLREENRALLrERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVV 162


                 ....*...
1L4U_A       160 RHILSRLQ 167
Cdd:PRK00131 163 NEILEKLE 170
AroK COG0703
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ...
 6-167 1.47e-71

Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis


Pssm-ID: 440467 [Multi-domain]  Cd Length: 165  Bit Score: 213.07  E-value: 1.47e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTS 85
Cdd:COG0703   2 VLIGMMGAGKSTVGRLLAKRLGLPFVDTDAEIEERAGMSIPEIFAEEGEAGFRELEREVLAELLEEENAVIATGGGAVLS 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A       86 PGVRAALAGH-TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILS 164
Cdd:COG0703  82 PENRELLKEHgTVVYLDASPETLLERLRRDDNRPLLQGEDPRERLEELLAEREPLYREVADITVDTDGRSPEEVVDEILE 161


                ...
1L4U_A      165 RLQ 167
Cdd:COG0703 162 ALE 164
SK cd00464
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ...
 6-155 8.19e-59

Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.


Pssm-ID: 238260 [Multi-domain]  Cd Length: 154  Bit Score: 180.44  E-value: 8.19e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTS 85
Cdd:cd00464   3 VLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGAVLR 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
1L4U_A       86 PGVRAALA-GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRaEKYRALMAKRAPLYRRVATMRVDTNRRNP 155
Cdd:cd00464  83 EENRRLLLeNGIVVWLDASPEELLERLARDKTRPLLQDEDP-ERLRELLEEREPLYREVADLTIDTDELSP 152
SKI pfam01202
Shikimate kinase;
11-167 7.80e-57

Shikimate kinase;


Pssm-ID: 426122 [Multi-domain]  Cd Length: 159  Bit Score: 175.46  E-value: 7.80e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         11 PGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRA 90
Cdd:pfam01202   1 MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLAEHGLVIATGGGAVLSEENRD 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
1L4U_A         91 ALA-GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMA-KRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQ 167
Cdd:pfam01202  81 LLKeRGIVIYLDAPLEVLLERLKRDKTRPLLQNKDPEEELLELLFeERDPLYEEAADIVIDTDESSPEEVATEILEALE 159
small_GTP TIGR00231
small GTP-binding protein domain; Proteins with a small GTP-binding domain recognized by this ...
 3-70 1.28e-03

small GTP-binding protein domain; Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. [Unknown function, General]


Pssm-ID: 272973 [Multi-domain]  Cd Length: 162  Bit Score: 37.74  E-value: 1.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1L4U_A          3 PKAVLVGLPGSGKSTIGRRLAK------ALGVGLLDTDVA--IEQRTGRSIADIFATDGEQEFRRIEEDVVRAALA 70
Cdd:TIGR00231   2 IKIVIVGHPNVGKSTLLNSLLGnkgsitEYYPGTTRNYVTtvIEEDGKTYKFNLLDTAGQEDYDAIRRLYYPQVER 77
 
Name Accession Description Interval E-value
aroK PRK00131
shikimate kinase; Reviewed
 1-167 4.36e-80

shikimate kinase; Reviewed


Pssm-ID: 234654 [Multi-domain]  Cd Length: 175  Bit Score: 235.08  E-value: 4.36e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         1 MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80
Cdd:PRK00131   3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTGG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        81 GAVTSPGVRAAL-AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVV 159
Cdd:PRK00131  83 GAVLREENRALLrERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVV 162


                 ....*...
1L4U_A       160 RHILSRLQ 167
Cdd:PRK00131 163 NEILEKLE 170
AroK COG0703
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ...
 6-167 1.47e-71

Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis


Pssm-ID: 440467 [Multi-domain]  Cd Length: 165  Bit Score: 213.07  E-value: 1.47e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTS 85
Cdd:COG0703   2 VLIGMMGAGKSTVGRLLAKRLGLPFVDTDAEIEERAGMSIPEIFAEEGEAGFRELEREVLAELLEEENAVIATGGGAVLS 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A       86 PGVRAALAGH-TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILS 164
Cdd:COG0703  82 PENRELLKEHgTVVYLDASPETLLERLRRDDNRPLLQGEDPRERLEELLAEREPLYREVADITVDTDGRSPEEVVDEILE 161


                ...
1L4U_A      165 RLQ 167
Cdd:COG0703 162 ALE 164
SK cd00464
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ...
 6-155 8.19e-59

Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.


Pssm-ID: 238260 [Multi-domain]  Cd Length: 154  Bit Score: 180.44  E-value: 8.19e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTS 85
Cdd:cd00464   3 VLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGAVLR 82

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
1L4U_A       86 PGVRAALA-GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRaEKYRALMAKRAPLYRRVATMRVDTNRRNP 155
Cdd:cd00464  83 EENRRLLLeNGIVVWLDASPEELLERLARDKTRPLLQDEDP-ERLRELLEEREPLYREVADLTIDTDELSP 152
SKI pfam01202
Shikimate kinase;
11-167 7.80e-57

Shikimate kinase;


Pssm-ID: 426122 [Multi-domain]  Cd Length: 159  Bit Score: 175.46  E-value: 7.80e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         11 PGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRA 90
Cdd:pfam01202   1 MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLAEHGLVIATGGGAVLSEENRD 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
1L4U_A         91 ALA-GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMA-KRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQ 167
Cdd:pfam01202  81 LLKeRGIVIYLDAPLEVLLERLKRDKTRPLLQNKDPEEELLELLFeERDPLYEEAADIVIDTDESSPEEVATEILEALE 159
aroK PRK05057
shikimate kinase AroK;
7-166 1.01e-38

shikimate kinase AroK;


Pssm-ID: 235335 [Multi-domain]  Cd Length: 172  Bit Score: 130.22  E-value: 1.01e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVrAALADHDG-VLSLGGGAVTS 85
Cdd:PRK05057   9 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVI-NELTEKQGiVLATGGGSVKS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        86 PGVRAALAGH-TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILS 164
Cdd:PRK05057  88 RETRNRLSARgVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIH 167


                 ..
1L4U_A       165 RL 166
Cdd:PRK05057 168 ML 169
PRK14021 PRK14021
bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
 3-164 8.97e-33

bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional


Pssm-ID: 184458 [Multi-domain]  Cd Length: 542  Bit Score: 121.89  E-value: 8.97e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGA 82
Cdd:PRK14021   7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGGGA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        83 VTSPGVRAALA-----GHTVVYLEISAAEGVRRTGGNTVRPLLAGpDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGA 157
Cdd:PRK14021  87 PMTPSTQHALAsyiahGGRVVYLDADPKEAMERANRGGGRPMLNG-DANKRWKKLFKQRDPVFRQVANVHVHTRGLTPQA 165


                 ....*..
1L4U_A       158 VVRHILS 164
Cdd:PRK14021 166 AAKKLID 172
PRK13947 PRK13947
shikimate kinase; Provisional
 6-163 2.42e-32

shikimate kinase; Provisional


Pssm-ID: 184412 [Multi-domain]  Cd Length: 171  Bit Score: 113.65  E-value: 2.42e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTS 85
Cdd:PRK13947   5 VLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGVVLN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        86 PGVRAALAGHTVVYLeISAAEGV--RRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYrRVATMRVDTNRRNPGAVVRHIL 163
Cdd:PRK13947  85 PENVVQLRKNGVVIC-LKARPEVilRRVGKKKSRPLLMVGDPEERIKELLKEREPFY-DFADYTIDTGDMTIDEVAEEII 162
PRK13946 PRK13946
shikimate kinase; Provisional
 6-167 5.07e-32

shikimate kinase; Provisional


Pssm-ID: 184411 [Multi-domain]  Cd Length: 184  Bit Score: 113.10  E-value: 5.07e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTS 85
Cdd:PRK13946  14 VLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLATGGGAFMN 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        86 PGVRAALAGHTV-VYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRvATMRVDTNRRNPGAVVRHILS 164
Cdd:PRK13946  94 EETRAAIAEKGIsVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAE-ADLTVASRDVPKEVMADEVIE 172


                 ...
1L4U_A       165 RLQ 167
Cdd:PRK13946 173 ALA 175
PRK13948 PRK13948
shikimate kinase; Provisional
 7-166 2.22e-31

shikimate kinase; Provisional


Pssm-ID: 184413 [Multi-domain]  Cd Length: 182  Bit Score: 111.42  E-value: 2.22e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSP 86
Cdd:PRK13948  15 LAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGGGTFMHE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        87 GVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRvATMRVDTNRRNPGAVVRHILSRL 166
Cdd:PRK13948  95 ENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQ-ATIHVSTDGRRSEEVVEEIVEKL 173
aroL PRK03731
shikimate kinase AroL;
1-169 5.18e-27

shikimate kinase AroL;


Pssm-ID: 235153 [Multi-domain]  Cd Length: 171  Bit Score: 100.02  E-value: 5.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         1 MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADhDGVLSLGG 80
Cdd:PRK03731   1 MTQPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAP-STVIATGG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        81 GAVTSPGVRAALAGH-TVVYLEISAAEGVRRTGGN---TVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNrRNPG 156
Cdd:PRK03731  80 GIILTEENRHFMRNNgIVIYLCAPVSVLANRLEANpeeDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDAT-QPPS 158

                        170
                 ....*....|...
1L4U_A       157 AVVRHILSRLQVP 169
Cdd:PRK03731 159 QVVSEILSALAQS 171
PRK13951 PRK13951
bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB;
4-154 9.17e-23

bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB;


Pssm-ID: 172457 [Multi-domain]  Cd Length: 488  Bit Score: 93.82  E-value: 9.17e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAV 83
Cdd:PRK13951   2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVV 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
1L4U_A        84 TSPGVRAALAGHTVVYLEISAAEGVRRTGGNTvRPLLAgpDRAEKYRALMAKRAPLYRRVATmrVDTNRRN 154
Cdd:PRK13951  82 IDPENRELLKKEKTLFLYAPPEVLMERVTTEN-RPLLR--EGKERIREIWERRKQFYTEFRG--IDTSKLN 147
PRK13949 PRK13949
shikimate kinase; Provisional
 7-142 4.18e-22

shikimate kinase; Provisional


Pssm-ID: 140006 [Multi-domain]  Cd Length: 169  Bit Score: 87.48  E-value: 4.18e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGA-VTS 85
Cdd:PRK13949   6 LVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGApCFF 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
1L4U_A        86 PGVRAALAGHTVVYLEISAAEGVRR-TGGNTVRPLLAGPDRAE-KY--RALMAKRAPLYRR 142
Cdd:PRK13949  86 DNMELMNASGTTVYLKVSPEVLFVRlRLAKQQRPLLKGKSDEElLDfiIEALEKRAPFYRQ 146
PRK08154 PRK08154
anaerobic benzoate catabolism transcriptional regulator; Reviewed
 7-171 1.47e-20

anaerobic benzoate catabolism transcriptional regulator; Reviewed


Pssm-ID: 236167 [Multi-domain]  Cd Length: 309  Bit Score: 86.16  E-value: 1.47e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHD-GVLSLGGGAVTS 85
Cdd:PRK08154 138 LIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEeMVLATGGGIVSE 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        86 PGVRAALAGH-TVVYLEISAAEGVRR-TGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRvATMRVDTNRRNPG----AVV 159
Cdd:PRK08154 218 PATFDLLLSHcYTVWLKASPEEHMARvRAQGDLRPMADNREAMEDLRRILASREPLYAR-ADAVVDTSGLTVAqslaRLR 296

                        170
                 ....*....|..
1L4U_A       160 RHILSRLQVPSP 171
Cdd:PRK08154 297 ELVRPALGLPAT 308
PLN02199 PLN02199
shikimate kinase
 7-86 5.05e-15

shikimate kinase


Pssm-ID: 177850 [Multi-domain]  Cd Length: 303  Bit Score: 70.88  E-value: 5.05e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ-RTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTS 85
Cdd:PLN02199 107 LVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQaMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIR 186


                 .
1L4U_A        86 P 86
Cdd:PLN02199 187 P 187
PRK00625 PRK00625
shikimate kinase; Provisional
 7-153 1.84e-09

shikimate kinase; Provisional


Pssm-ID: 134335 [Multi-domain]  Cd Length: 173  Bit Score: 53.99  E-value: 1.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR----SIADIFATDGEQEFRRIEEDVVRAALADHdGVLSLGGGA 82
Cdd:PRK00625   5 LCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGalysSPKEIYQAYGEEGFCREEFLALTSLPVIP-SIVALGGGT 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
1L4U_A        83 VT-SPGVRAALAGHTVVYLEISAAEGVRRTggnTVRPLlagPDRaekyralmAKRAPLYRRVATMRVDTNRR 153
Cdd:PRK00625  84 LMiEPSYAHIRNRGLLVLLSLPIATIYQRL---QKRGL---PER--------LKHAPSLEEILSQRIDRMRS 141
AAA_18 pfam13238
AAA domain;
6-69 1.02e-06

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 45.50  E-value: 1.02e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
1L4U_A          6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFatdgeQEFRRIEEDVVRAAL 69
Cdd:pfam13238   2 LITGTPGVGKTTLAKELSKRLGFGDNVRDLALENGLVLGDDPET-----RESKRLDEDKLDRLL 60
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
6-110 1.19e-06

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 46.06  E-value: 1.19e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIAdifATDGEQEFRRIEEDVVRAALADHdgvLSLGGGAV-- 83
Cdd:COG0645   3 LVCGLPGSGKSTLARALAERLGAVRLRSDVVRKRLFGAGLA---PLERSPEATARTYARLLALAREL---LAAGRSVIld 76

                        90       100       110
                ....*....|....*....|....*....|....*.
1L4U_A       84 ---TSPGVRAAL------AGHTVVYLEISAAEGVRR 110
Cdd:COG0645  77 atfLRRAQREAFralaeeAGAPFVLIWLDAPEEVLR 112
GntK COG3265
Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the ...
 6-34 9.40e-06

Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442496 [Multi-domain]  Cd Length: 164  Bit Score: 43.58  E-value: 9.40e-06
                        10        20
                ....*....|....*....|....*....
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVGLLDTD 34
Cdd:COG3265   5 VVMGVSGSGKSTVGQALAERLGWPFIDGD 33
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 6-70 2.09e-05

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 42.30  E-value: 2.09e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
1L4U_A          6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADI-FATDGEQEFRRIEEDVVRAALA 70
Cdd:pfam13671   3 LLVGLPGSGKSTLARRLLEELGAVRLSSDDERKRLFGEGRPSIsYYTDATDRTYERLHELARIALR 68
CmkB COG1102
Cytidylate kinase [Nucleotide transport and metabolism];
9-75 4.38e-05

Cytidylate kinase [Nucleotide transport and metabolism];


Pssm-ID: 440719 [Multi-domain]  Cd Length: 188  Bit Score: 42.12  E-value: 4.38e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        9 GLPGSGKSTIGRRLAKALGVGLLDTDV----------------AIEQRTGRSIADIFATdgEQEFRRIEEDVVRaALADH 72
Cdd:COG1102   7 REPGSGGTTIAKRLAEKLGLPLYDGEIlreaakerglseeefeKLDEKAPSLLYRDTAE--EDEIDRALDKVIR-ELARK 83


                ...
1L4U_A       73 DGV 75
Cdd:COG1102  84 GNC 86
Kti12 COG4088
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ...
 6-167 4.42e-05

tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];


Pssm-ID: 443264 [Multi-domain]  Cd Length: 179  Bit Score: 42.02  E-value: 4.42e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALG-----VGLLDTDvaiEQRTGRSIADIFATDGEQEFRRIEEDVVRAALadHDGVLSLGG 80
Cdd:COG4088   8 ILTGPPGSGKTTFAKALAQRLYaegiaVALLHSD---DFRRFLVNESFPKETYEEVVEDVRTTTADNAL--DNGYSVIVD 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A       81 GAVTSPGVR---AALAGHT----VVYLEISAAEGVRRtggNTVRpllAGPDRAEKYRALMAKR-APLYRRVATMRVDTNR 152
Cdd:COG4088  83 GTFYYRSWQrdfRNLAKHKapihIIYLKAPLETALRR---NRER---GEPIPERVIARMYRKFdKPGTKDRPDLVIDTTE 156

                       170
                ....*....|....*
1L4U_A      153 RNPGAVVRHILSRLQ 167
Cdd:COG4088 157 DSVSETLDAILKAIE 171
CMPK cd02020
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ...
 9-33 1.51e-04

Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.


Pssm-ID: 238978 [Multi-domain]  Cd Length: 147  Bit Score: 39.78  E-value: 1.51e-04
                        10        20
                ....*....|....*....|....*
1L4U_A        9 GLPGSGKSTIGRRLAKALGVGLLDT 33
Cdd:cd02020   6 GPAGSGKSTVAKLLAKKLGLPYLDT 30
Cmk COG0283
Cytidylate kinase [Nucleotide transport and metabolism];
12-33 2.82e-04

Cytidylate kinase [Nucleotide transport and metabolism];


Pssm-ID: 440052 [Multi-domain]  Cd Length: 220  Bit Score: 40.01  E-value: 2.82e-04
                        10        20
                ....*....|....*....|..
1L4U_A       12 GSGKSTIGRRLAKALGVGLLDT 33
Cdd:COG0283  10 GSGKSTVAKALAKRLGYHYLDT 31
GntK cd02021
Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting ...
 6-35 7.05e-04

Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.


Pssm-ID: 238979 [Multi-domain]  Cd Length: 150  Bit Score: 38.00  E-value: 7.05e-04
                        10        20        30
                ....*....|....*....|....*....|
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35
Cdd:cd02021   3 VVMGVSGSGKSTVGKALAERLGAPFIDGDD 32
PRK14530 PRK14530
adenylate kinase; Provisional
 1-74 1.01e-03

adenylate kinase; Provisional


Pssm-ID: 237747 [Multi-domain]  Cd Length: 215  Bit Score: 38.23  E-value: 1.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         1 MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADI---------FATDGEQEFRRIEEDVVRAALAD 71
Cdd:PRK14530   2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMdteydtpgeYMDAGELVPDAVVNEIVEEALSD 81


                 ...
1L4U_A        72 HDG 74
Cdd:PRK14530  82 ADG 84
ADK cd01428
Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine ...
 4-28 1.17e-03

Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.


Pssm-ID: 238713 [Multi-domain]  Cd Length: 194  Bit Score: 37.99  E-value: 1.17e-03
                        10        20
                ....*....|....*....|....*
1L4U_A        4 KAVLVGLPGSGKSTIGRRLAKALGV 28
Cdd:cd01428   1 RILLLGPPGSGKGTQAERLAKKYGL 25
small_GTP TIGR00231
small GTP-binding protein domain; Proteins with a small GTP-binding domain recognized by this ...
 3-70 1.28e-03

small GTP-binding protein domain; Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. [Unknown function, General]


Pssm-ID: 272973 [Multi-domain]  Cd Length: 162  Bit Score: 37.74  E-value: 1.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1L4U_A          3 PKAVLVGLPGSGKSTIGRRLAK------ALGVGLLDTDVA--IEQRTGRSIADIFATDGEQEFRRIEEDVVRAALA 70
Cdd:TIGR00231   2 IKIVIVGHPNVGKSTLLNSLLGnkgsitEYYPGTTRNYVTtvIEEDGKTYKFNLLDTAGQEDYDAIRRLYYPQVER 77
DPCK cd02022
Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of ...
 7-72 1.45e-03

Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.


Pssm-ID: 238980  Cd Length: 179  Bit Score: 37.50  E-value: 1.45e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
1L4U_A        7 LVGLPGSGKSTIGRRLAKaLGVGLLDTDVAIEQRT---GRSIADIFATDGeQEFRRIEEDVVRAALADH 72
Cdd:cd02022   4 LTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYepgGPALQAIVEAFG-PDILLEDGELDRKKLGEI 70
AAA_24 pfam13479
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.
 1-73 1.52e-03

AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.


Pssm-ID: 433243  Cd Length: 199  Bit Score: 37.69  E-value: 1.52e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
1L4U_A          1 MAPKAVLVGLPGSGKSTIGRRLAKALgvgLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHD 73
Cdd:pfam13479   1 KKLKILIYGPSGIGKTTFAKTLPKPL---FLDTEKGSKALDGDRFPDIVIRDSWQDFLDAIDELTAAELADYK 70
PRK04182 PRK04182
cytidylate kinase; Provisional
 9-30 1.83e-03

cytidylate kinase; Provisional


Pssm-ID: 235244 [Multi-domain]  Cd Length: 180  Bit Score: 37.09  E-value: 1.83e-03
                         10        20
                 ....*....|....*....|..
1L4U_A         9 GLPGSGKSTIGRRLAKALGVGL 30
Cdd:PRK04182   7 GPPGSGKTTVARLLAEKLGLKH 28
CysC COG0529
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; ...
 7-26 1.89e-03

Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; Adenylylsulfate kinase or related kinase is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 440295 [Multi-domain]  Cd Length: 189  Bit Score: 37.38  E-value: 1.89e-03
                        10        20
                ....*....|....*....|
1L4U_A        7 LVGLPGSGKSTIGRRLAKAL 26
Cdd:COG0529  21 FTGLSGSGKSTLANALERRL 40
Fap7 COG1936
Broad-specificity NMP kinase [Nucleotide transport and metabolism];
6-38 3.27e-03

Broad-specificity NMP kinase [Nucleotide transport and metabolism];


Pssm-ID: 441539 [Multi-domain]  Cd Length: 173  Bit Score: 36.33  E-value: 3.27e-03
                        10        20        30
                ....*....|....*....|....*....|....
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVGLLD-TDVAIE 38
Cdd:COG1936   4 AITGTPGTGKTTVAKLLAERLGLEVIHlNDLVKE 37
Cytidylate_kin2 pfam13189
Cytidylate kinase-like family; This family includes enzymes related to cytidylate kinase.
 9-62 3.94e-03

Cytidylate kinase-like family; This family includes enzymes related to cytidylate kinase.


Pssm-ID: 433023 [Multi-domain]  Cd Length: 176  Bit Score: 36.45  E-value: 3.94e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
1L4U_A          9 GLPGSGKSTIGRRLAKALGVGLLDTDVAIEqrtgrsIADIFATDgEQEFRRIEE 62
Cdd:pfam13189   6 RQYGSGGTTIAKKLAEKLGYPFYDREILDE------IAKELGIS-EEEFELFDE 52
Adk COG0563
Adenylate kinase or related kinase [Nucleotide transport and metabolism]; Adenylate kinase or ...
 6-28 5.13e-03

Adenylate kinase or related kinase [Nucleotide transport and metabolism]; Adenylate kinase or related kinase is part of the Pathway/BioSystem: Pyrimidine biosynthesis


Pssm-ID: 440329 [Multi-domain]  Cd Length: 212  Bit Score: 36.26  E-value: 5.13e-03
                        10        20
                ....*....|....*....|...
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGV 28
Cdd:COG0563   4 ILLGPPGAGKGTQAKRLAEKYGI 26
PRK05541 PRK05541
adenylylsulfate kinase; Provisional
 7-110 6.44e-03

adenylylsulfate kinase; Provisional


Pssm-ID: 235498  Cd Length: 176  Bit Score: 35.80  E-value: 6.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1L4U_A         7 LVGLPGSGKSTIGRRLAKAL-----GVGLLDTDvaiEQRtgrsiaDIFATDGEQEFRRIEEDVVRAALADhdgVLSLGGG 81
Cdd:PRK05541  12 ITGLAGSGKTTIAKALYERLklkysNVIYLDGD---ELR------EILGHYGYDKQSRIEMALKRAKLAK---FLADQGM 79

                         90       100       110
                 ....*....|....*....|....*....|....*....
1L4U_A        82 AVTSPGV----------RAALAGHTVVYLEISAAEGVRR 110
Cdd:PRK05541  80 IVIVTTIsmfdeiyaynRKHLPNYFEVYLKCDMEELIRR 118
ParA pfam10609
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ...
 5-55 7.45e-03

NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.


Pssm-ID: 431392 [Multi-domain]  Cd Length: 246  Bit Score: 35.89  E-value: 7.45e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
1L4U_A          5 AVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVaieqrTGRSIADIFATDGEQ 55
Cdd:pfam10609   7 AVASGKGGVGKSTVAVNLALALArlgykVGLLDADI-----YGPSIPRMLGLEGER 57
COG4639 COG4639
Predicted kinase [General function prediction only];
6-34 7.98e-03

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 35.19  E-value: 7.98e-03
                        10        20
                ....*....|....*....|....*....
1L4U_A        6 VLVGLPGSGKSTIGRRLAKALGVglLDTD 34
Cdd:COG4639   6 VLIGLPGSGKSTFARRLFAPTEV--VSSD 32
PRK03839 PRK03839
putative kinase; Provisional
 9-63 9.70e-03

putative kinase; Provisional


Pssm-ID: 179660  Cd Length: 180  Bit Score: 35.08  E-value: 9.70e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
1L4U_A         9 GLPGSGKSTIGRRLAKALGVGLLD-TDVAIEQRTGRSIADIFATDGEQEFRRIEED 63
Cdd:PRK03839   7 GTPGVGKTTVSKLLAEKLGYEYVDlTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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