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Conserved domains on  [gi|15826041|pdb|1E5P|A]
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Chain A, APHRODISIN

Protein Classification

lipocalin/fatty-acid binding family protein( domain architecture ID 14443768)

lipocalin/fatty-acid binding family protein such as lipocalins, which are transporters for small hydrophobic molecules, including lipids, steroid hormones, bilins, and retinoids

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
lipocalin_OBP-like cd19427
Lipocalin odorant-binding protein and similar proteins; Odorant-binding proteins (OBPs) ...
3-149 1.37e-73

Lipocalin odorant-binding protein and similar proteins; Odorant-binding proteins (OBPs) transport small hydrophobic molecules in the nasal mucosa of vertebrates. This subfamily includes mouse odorant-binding protein 1a (Obp1a), Obp1b, and probasin. Mouse Obp1a and Obp1b, which are expressed in the nasal mucosa, bind the chemical odorant 2-isobutyl-3-methoxypyrazine, and may form a OBPO1a/Opb1B heterodimer. Mouse probasin may play a role in the biology of the prostate gland. This group also includes hamster female-specific lacrimal gland protein (FLP) and aphrodisin. FLP may bind tear lipids or lipid-like pheromones found in hamster tears; aphrodisin is found in hamster vaginal discharge, carries pheromones, and stimulates copulatory behavior in males. This group also includes dog allergen Ca f4 which is expressed by tongue epithelial tissue and found in saliva and dander. Bovine OBP is believed to act as a homodimer, having the C-terminal alpha-helix of each monomer stacking against the beta-barrel of the other monomer; this is possible due to its lack of cysteines and therefore lack of disulfide bonds. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


:

Pssm-ID: 381202  Cd Length: 147  Bit Score: 216.75  E-value: 1.37e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A        3 FAELQGKWYTIVIAADNLEKIEEGGPLRFYFRHIDCYKNCSE*EITFYVITNNQCSKTTVIGYLKGNGTYETQFEGNNIF 82
Cdd:cd19427   1 LSELSGPWRTIYIAADNVEKIEEGGPLRTYFREIECDDECQKIKITFYVKKNGQCQETTVVGYKQEDGTYVADYEGQNYF 80
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
1E5P_A       83 QPLYITSDKIFFTNKN*DRAGQETN*IVVAGKGNALTPEENEILVQFAHEKKIPVENILNILATDTC 149
Cdd:cd19427  81 KVVSVSEDALVFYNVNVDRAGRKTKLTLLLGKGNSLTPEQKEKFKKLAEEKGIPEENIRNLLETDNC 147
 
Name Accession Description Interval E-value
lipocalin_OBP-like cd19427
Lipocalin odorant-binding protein and similar proteins; Odorant-binding proteins (OBPs) ...
3-149 1.37e-73

Lipocalin odorant-binding protein and similar proteins; Odorant-binding proteins (OBPs) transport small hydrophobic molecules in the nasal mucosa of vertebrates. This subfamily includes mouse odorant-binding protein 1a (Obp1a), Obp1b, and probasin. Mouse Obp1a and Obp1b, which are expressed in the nasal mucosa, bind the chemical odorant 2-isobutyl-3-methoxypyrazine, and may form a OBPO1a/Opb1B heterodimer. Mouse probasin may play a role in the biology of the prostate gland. This group also includes hamster female-specific lacrimal gland protein (FLP) and aphrodisin. FLP may bind tear lipids or lipid-like pheromones found in hamster tears; aphrodisin is found in hamster vaginal discharge, carries pheromones, and stimulates copulatory behavior in males. This group also includes dog allergen Ca f4 which is expressed by tongue epithelial tissue and found in saliva and dander. Bovine OBP is believed to act as a homodimer, having the C-terminal alpha-helix of each monomer stacking against the beta-barrel of the other monomer; this is possible due to its lack of cysteines and therefore lack of disulfide bonds. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381202  Cd Length: 147  Bit Score: 216.75  E-value: 1.37e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A        3 FAELQGKWYTIVIAADNLEKIEEGGPLRFYFRHIDCYKNCSE*EITFYVITNNQCSKTTVIGYLKGNGTYETQFEGNNIF 82
Cdd:cd19427   1 LSELSGPWRTIYIAADNVEKIEEGGPLRTYFREIECDDECQKIKITFYVKKNGQCQETTVVGYKQEDGTYVADYEGQNYF 80
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
1E5P_A       83 QPLYITSDKIFFTNKN*DRAGQETN*IVVAGKGNALTPEENEILVQFAHEKKIPVENILNILATDTC 149
Cdd:cd19427  81 KVVSVSEDALVFYNVNVDRAGRKTKLTLLLGKGNSLTPEQKEKFKKLAEEKGIPEENIRNLLETDNC 147
Lipocalin pfam00061
Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small ...
7-147 2.23e-18

Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The family also encompasses the enzyme prostaglandin D synthase (EC:5.3.99.2). Alignment subsumes both the lipocalin and fatty acid binding protein signatures from PROSITE. This is supported on structural and functional grounds. The structure is an eight-stranded beta barrel.


Pssm-ID: 395015  Cd Length: 143  Bit Score: 75.94  E-value: 2.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A          7 QGKWYTIVIAADNlEKIEEGGPLRFYFRHIDCyKNCSE*EITFYVITNNQCSKTTVIGYLK-GNGTYETQFE---GNNIF 82
Cdd:pfam00061   1 SGKWYLIASANFN-ELEEEMKALGVGFATIKV-LENGNLPVTEITKEGGKCKTVSVTFKKTeEPGKLGVEFDeyaGGRKV 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
1E5P_A         83 QPLYITSDKIFFTNKN*DRAGQETN*IVVAGKGNALTPEENEILVQFAHEKKIPVENILNILATD 147
Cdd:pfam00061  79 KVLTTDYDNYLIFYQKGDKDGKTTIVRELYGRDPELSPELLEKFKKFLKELGIDEENIVRLYQKD 143
 
Name Accession Description Interval E-value
lipocalin_OBP-like cd19427
Lipocalin odorant-binding protein and similar proteins; Odorant-binding proteins (OBPs) ...
3-149 1.37e-73

Lipocalin odorant-binding protein and similar proteins; Odorant-binding proteins (OBPs) transport small hydrophobic molecules in the nasal mucosa of vertebrates. This subfamily includes mouse odorant-binding protein 1a (Obp1a), Obp1b, and probasin. Mouse Obp1a and Obp1b, which are expressed in the nasal mucosa, bind the chemical odorant 2-isobutyl-3-methoxypyrazine, and may form a OBPO1a/Opb1B heterodimer. Mouse probasin may play a role in the biology of the prostate gland. This group also includes hamster female-specific lacrimal gland protein (FLP) and aphrodisin. FLP may bind tear lipids or lipid-like pheromones found in hamster tears; aphrodisin is found in hamster vaginal discharge, carries pheromones, and stimulates copulatory behavior in males. This group also includes dog allergen Ca f4 which is expressed by tongue epithelial tissue and found in saliva and dander. Bovine OBP is believed to act as a homodimer, having the C-terminal alpha-helix of each monomer stacking against the beta-barrel of the other monomer; this is possible due to its lack of cysteines and therefore lack of disulfide bonds. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381202  Cd Length: 147  Bit Score: 216.75  E-value: 1.37e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A        3 FAELQGKWYTIVIAADNLEKIEEGGPLRFYFRHIDCYKNCSE*EITFYVITNNQCSKTTVIGYLKGNGTYETQFEGNNIF 82
Cdd:cd19427   1 LSELSGPWRTIYIAADNVEKIEEGGPLRTYFREIECDDECQKIKITFYVKKNGQCQETTVVGYKQEDGTYVADYEGQNYF 80
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
1E5P_A       83 QPLYITSDKIFFTNKN*DRAGQETN*IVVAGKGNALTPEENEILVQFAHEKKIPVENILNILATDTC 149
Cdd:cd19427  81 KVVSVSEDALVFYNVNVDRAGRKTKLTLLLGKGNSLTPEQKEKFKKLAEEKGIPEENIRNLLETDNC 147
Lipocalin pfam00061
Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small ...
7-147 2.23e-18

Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The family also encompasses the enzyme prostaglandin D synthase (EC:5.3.99.2). Alignment subsumes both the lipocalin and fatty acid binding protein signatures from PROSITE. This is supported on structural and functional grounds. The structure is an eight-stranded beta barrel.


Pssm-ID: 395015  Cd Length: 143  Bit Score: 75.94  E-value: 2.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A          7 QGKWYTIVIAADNlEKIEEGGPLRFYFRHIDCyKNCSE*EITFYVITNNQCSKTTVIGYLK-GNGTYETQFE---GNNIF 82
Cdd:pfam00061   1 SGKWYLIASANFN-ELEEEMKALGVGFATIKV-LENGNLPVTEITKEGGKCKTVSVTFKKTeEPGKLGVEFDeyaGGRKV 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
1E5P_A         83 QPLYITSDKIFFTNKN*DRAGQETN*IVVAGKGNALTPEENEILVQFAHEKKIPVENILNILATD 147
Cdd:pfam00061  79 KVLTTDYDNYLIFYQKGDKDGKTTIVRELYGRDPELSPELLEKFKKFLKELGIDEENIVRLYQKD 143
lipocalin_MUP-like cd19428
major urinary proteins (MUPs) and similar proteins; Mouse urine contains major urinary ...
2-149 6.46e-17

major urinary proteins (MUPs) and similar proteins; Mouse urine contains major urinary proteins (MUPs) which bind low molecular weight hydrophobic organic compounds such as urinary volatile pheromones such as the male-specific 2-sec-butyl-4,5-dihydrothiazole (SB2HT) which hastens puberty in female mice. The association between MUPs and these volatiles slows the release of the volatiles into the air from urine marks. MUPs may also act as pheromones themselves. MUPs, expressed in the nasal and vomeronasal mucosa, may be important for delivering urinary volatiles to receptors in the vomeronasal organ. This group includes MUPs encoded by central genes in the MUP cluster, as well as those encoded by peripheral genes such as Darcin/Mup20 which binds most of the male pheromone SB2HT in urine and was the first MUP shown to have male pheromonal activity in its own right. This group includes rat MUPs (also called alpha-2U globulins) and other lipocalins such as major horse allergen Equ c 1 and boar salivary lipocalin, a pheromone-binding protein specifically expressed in the submaxillary glands of the boar. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381203  Cd Length: 158  Bit Score: 72.86  E-value: 6.46e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A        2 DFAELQGKWYTIVIAADNLEKIEEGGPLRFYFRHIDCYKNCSe*EITFYVITNNQCSKTTVIGYLKG-NGTYETQFEGNN 80
Cdd:cd19428   7 DVSKINGEWYSILLASDKREKIEENGSMRVFVEHIHVLENSL--AFKFHTKVNGECTELNLVADKTEkAGEYSVTYDGYN 84
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A       81 IFQPLYITSDK-IFFTNKN*DRaGQETN*IVVAGKGNALTPEENEILVQFAHEKKIPVENILNILATDTC 149
Cdd:cd19428  85 TFTILETDYDNyIMFHLINFKN-GETFQLMELYGREPDVSSDIKERFVKLCEEHGIIKENIIDLTKTDRC 153
lipocalin_9 cd19429
lipocalin 9; Lipocalin 9 (LCN9) is specifically expressed in the epididymis. It belongs to the ...
2-149 7.36e-09

lipocalin 9; Lipocalin 9 (LCN9) is specifically expressed in the epididymis. It belongs to the lipocalin/cytosolic fatty-acid binding protein family. Lipocalins are typically small extracellular proteins that bind small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids and form covalent or non-covalent complexes with soluble macromolecules as well as membrane bound-receptors. They are involved in many important functions, like ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior.


Pssm-ID: 381204  Cd Length: 156  Bit Score: 51.38  E-value: 7.36e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A        2 DFAELQGKWYTIVIAADNLEKIEEGGPLRFYFRHIDCYKNcSE*EITFYVITNNQCSKTTVI-GYLKGNGTYETQFEGNN 80
Cdd:cd19429   9 NMARISGVWYSISMASDNMTRIEENGDLRLFIRNIELLNN-GSLQFDFHFMLQGECVAVTVVcEKTKKNGEFSIAYEGEN 87
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
1E5P_A       81 ifQPLYITSDK---IFFTNKN*dRAGQETN*IVVAGKGNALTPEENEILVQFAHEKKIPVENILNILATDTC 149
Cdd:cd19429  88 --KVLLLETDYsmyIIFYLQNI-RNGTETQVLALYGRSILLDKTHQRRFENICNKYGLGPRNTIDMAKKDFC 156
lipocalin_FABP cd00301
lipocalin/cytosolic fatty acid-binding protein family; Lipocalins are diverse, mainly low ...
5-100 1.36e-06

lipocalin/cytosolic fatty acid-binding protein family; Lipocalins are diverse, mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules as well as membrane bound-receptors. They have a large beta-barrel ligand-binding cavity. Members include retinol-binding protein, retinoic acid-binding protein, complement protein C8 gamma, Can f 2, apolipoprotein D, extracellular fatty acid-binding protein, beta-lactoglobulin, oderant-binding protein, and bacterial lipocalin Blc. Lipocalins are involved in many important processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty acid-binding proteins also bind hydrophobic ligands in a non-covalent, reversible manner, and are involved in protection and shuttling of fatty acids within the cell, and in acquisition and removal of fatty acids from intracellular sites.


Pssm-ID: 381182  Cd Length: 109  Bit Score: 44.46  E-value: 1.36e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1E5P_A        5 ELQGKWYTIVIAADNlekiEEGGPLRFYFRHIDCYKNcSE*EITFYVITNNQCSKTTVIGYL-KGNGTYETQFEGNNIFQ 83
Cdd:cd00301   1 KFSGKWYEVASASNA----PEEDEGKCTTAEYTLEGN-GNLKVTNSFVRDGVCKSITGTLKKtDGPGKFTVTYPGYTGKN 75
                        90       100
                ....*....|....*....|..
1E5P_A       84 PLYITSDK-----IFFTNKN*D 100
Cdd:cd00301  76 ELYVLSTDydnyaIVYSCKNLD 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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