Conserved Protein Domain Family
Integrase_1

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pfam12835: Integrase_1 
Integrase
This is a family of DNA-binding prophage integrases found in Proteobacteria.
Statistics
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PSSM-Id: 432820
Aligned: 14 rows
Threshold Bit Score: 105.622
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q144J5            102 QLVRRIRKGTKRAMNPTEIDELIGKAKWIDQGLMHMISLALHLGLRRKEALMCARDLGMWLDALVRGDSTLPLMRGSKNA 181 Paraburkho...
CBJ91451           28 GLSGASRAGTKQAIPDAMFQVVYQKALERDAGFAATLKLARLMGLRSQEAVQCSASLKSWRKQLEQPEPKLHVVFGTKGG 107
wugsc:KPN_04114    95 GLGNASRAGTHLPLTSERWLSALSALHEKDEGLALTLELARAMGLRSQEAVQCCQSLKTWAAALERGENRLQVVFGTKGS 174
Q8ZMP4            102 GISGASCDGTHRAIPDALYHQVLDRVHHIDAGLAASLQLARVMGLRGQEAVQCCQSLKTWDKQLEKGAERLPVIFGTKGG 181 Salmonella...
IBRC:GU3_16309    119 TIRTEVPAGADREVADRAIAVL---RDAGKPHAAAVAELARELGLRSKEAALLdaskaaqea---mkkgtiriIDGTKGG 192
mgcchina:PST_3199 102 AERRYVTNVSKARKLGSGLDLV------TDAHVRMSLQLQAVFGLRREEAIKFqpsyadrgd------hlalkgswTKGG 169
WP_013183524      113 GISGASRIGTKEALTPDEFKQAFREIEKIDKGVAATLQLAYVLGLRTKEAVQACKSVQTWKNSLNNEHHSVRIVFGTKGG 192 Xenorhabdu...
Q6D9M7            104 GIFGASRDGSKVAIPDSIYQSILEKVSAADKGAGAAMELSRLLGLRTEETIQSVKSLKTWQKALQNGDEKVRIVFGTKGG 183 Pectobacte...
AHG20656          108 GLSGASRDGSKVAISDERYHAALVHIREKDEGVATAMQLARYLGLRTEEAIQSAKSLKTWRQALNKGDERIRIVFGTKGG 187
Q7N7J7            104 GLSGTSREGTKMAISDERYHTTLVLARGKDEGVAAAMQLSRYLGLRTEEAVQAAKSLRTWEKALLRGDERVRVVFGTKGG 183 Photorhabd...
Q144J5            182 RPRHVRIIEcerpqtIEAIRSALAYA------------REHNLELITGngktlksamnRLKALLRRa--gMvG---PTSF 244 Paraburkho...
CBJ91451          108 RPRQTRVLD------VAAVKEAVEQAiavaeqrggkliDKLDLKQAMN----------YWRTHTTR----I-GlkgCHSP 166
wugsc:KPN_04114   175 RSRQTVELE------PERLRNILNRAiplvaqrgghllNKPDLRAAMN----------YWRASAVR----A-GltgPYAP 233
Q8ZMP4            182 RPRMTQVTD------REAVRQAVKEAlgiagernghliDKPDLKSAMD----------YWHNHLRD----T-GltgEYSP 240 Salmonella...
IBRC:GU3_16309    193 RPRELAITNer---qIVALVNAATL-------------QGHERALIPPdhn-----wkTFREGELRsgrgLlQshaIVGY 251
mgcchina:PST_3199 170 RERTVPITTpe---qREVLKAAHRLV--------------GARSLIPAhknyi-qqrhVYDGQCKAa--------gLSHM 223
WP_013183524      193 HPRDTTILD------REQLKSAIYYAenimkeregkliDKPSIHQAVD----------RYRNI----------------- 239 Xenorhabdu...
Q6D9M7            184 RPRDTTIIE------RDRLISAVNNAihvasenngrliNRPALHLAIE----------QYRNIVRD----A-GlvgKYAP 242 Pectobacte...
AHG20656          188 RPRDTTIVE------RDKVIRAVNDAikyadkhngrlvDKPSLHSAID----------RYRNTLKD----A-GltgKESP 246
Q7N7J7            184 RPRDTTVVE------RDKVIQAVRTAikyanknqgrliDKPNLHSAID----------RYRNIVRE----A-GltgKSSP 242 Photorhabd...
Q144J5            245 HSLRYTYALK 254 Paraburkholderia xenovorans LB400
CBJ91451          167 HSLRYAWAQD 176
wugsc:KPN_04114   234 HSLRYSWAQE 243
Q8ZMP4            241 HSLRYAWAQD 250 Salmonella enterica subsp. enterica serovar Typhimurium
IBRC:GU3_16309    252 HDLRSAYACE 261
mgcchina:PST_3199 224 HGLRHQYAQS 233
WP_013183524      240 YAINLKMQEL 249 Xenorhabdus nematophila
Q6D9M7            243 HSLRYAYTQD 252 Pectobacterium atrosepticum
AHG20656          247 HSLRYAYSRE 256
Q7N7J7            243 HSLRYAYAVE 252 Photorhabdus laumondii subsp. laumondii
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