Conserved Protein Domain Family
EDH_00030

?
TIGR04180: EDH_00030 
NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster.
Statistics
?
PSSM-Id: 275033
Aligned: 20 rows
Threshold Bit Score: 565.39
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_04526553    4 VLVTGADGFIGSHLTEILIKEGYKVKAFVNYNSFNSWGWLDSIDKEIINEIEIFSGDIRDPNGVKVSMKGIEEVYHLAAL 83  Clostridium but...
ZP_04584290    8 VLVTGSGGFIGSHLVERLLEEGCEVVAFVKYNSLNKWGWLDSFDKKVLDKIEIFTGDIRNSDSVRKAVKSVDVVFHLAAL 87  Sulfurihydrogen...
ZP_05092212    8 VLVTGAGGFIGSHLVEKLVEMGAKVRAFVRYNSKNNWGWLETSP--YKDEIEIYAGDIRDYDSVKDSMKGVEVVFHLAAL 85  Carboxydibrachi...
WP_012344332   8 VFITGAEGFIGSHLTEKLVQLGANVTALVQYNSFNNWGWIDTFSKEVKDSINVVTGDMREYDGMKRIIKGQDVVFHLAAL 87  Clostridium bot...
WP_011824799   7 ALVTGADGFIGSHLVEYLLNKGCNVRAFCLYNSNGSWGWLDRIDKEYKKNIEVVLGDIRDPICVKNALKGCDHVYHLAAL 86  Prochlorococcus...
WP_012195792   5 VLVTGADGFIGSHLVESLLDNGYEVKPFCFYNSSGSWGWLEELCDEKSKELDVFLGDIRDPVCVKEAMKGCDMVFHLAAL 84  Prochlorococcus...
WP_012008109   5 VLVTGADGFIGSHLVETLVRDGYKVKAFCLYNSLGSWGWLDHSSPEIIQNVEIILGDVRDQFCVENSLVGVDIVFHLASL 84  Prochlorococcus...
WP_012895974   3 ILVTGAGGFIGSHLTEFLIEKGHDVRAFVRYNSRNFWGWLEKS--KVIDKIEVYTGDVRDYDSVYNAMKGVDVVFHLAAL 80  Thermotoga naph...
WP_011088730   9 VLVTGSDGFIGSHVVEELVKAGARVKAIVYYNSFNSWGWLDTVPADVMKSVEVVAGDIRDPHFMIAAASGCTDVLHLAAL 88  Bradyrhizobium ...
WP_013121605   8 VLVTGAGGFIGSHLTERLVELGAEVTAFVRYNSRNYWGWLEESC--YLKDIRVVNGDIRDYDSVRSAAKGAEVIFHLAAL 85  Thermincola potens
ZP_04526553   84 IAIPFSYHSPDSYVDTNIKGTLNVLQAARELETSRVLITSTSEVYGTAKYIPIDELHPYQGQSPYSATKIGADRLAESFY 163 Clostridium but...
ZP_04584290   88 ISIPYSYISPESYVETNINGTLNILQACMDYSIEKVLITSTSEVYGTAKFVPITEDHPKQGQSPYSATKIAADYLAESFY 167 Sulfurihydrogen...
ZP_05092212   86 IGIPYSYVSPLAYIKTNIEGTYNVLQAARELGVEKVIHTSTSEVYGTAKYVPIDELHPLQPQSPYSATKISADNIALSFY 165 Carboxydibrachi...
WP_012344332  88 IAIPYSYLSPMAYVKTNVEGTTNVLEACREYEVEKIVHTSTSETYGTALYVPIDEKHPMQGQSPYSASKIAADKMAESFY 167 Clostridium bot...
WP_011824799  87 IAIPYSYMAPASYVETNIMGTLNVIQAARELDVSKVVHTSTSETYGTAQFVPITEDHPLVAQSPYAASKIGADQIALSYW 166 Prochlorococcus...
WP_012195792  85 IGIPYSYIAARSYIETNIIGTLNVLEAAKDLGVSKIIHTSTSETYGTAQSVPINEKHPLSGQSPYSASKIGADQIALSFW 164 Prochlorococcus...
WP_012008109  85 IAIPHSYKAPQSYVETNINGTLNILQSSKKLGIEKIIHTSTSETYGTAQYVPIDEKHHLVAQSPYAATKIAADQLAMSFF 164 Prochlorococcus...
WP_012895974  81 IGIPYSYISPLAYIKTNVEGTYNILQAARERKVSRVVHTSTSEIYGTAQYVPIDEKHPYNPQSPYAASKAAADHLALSFY 160 Thermotoga naph...
WP_011088730  89 IAIPFSYVAPDSYVETNVRGTVNVLQAARLAGVRRFVQTSTSEVYGTAQTVPIKENHPLVGQSPYSASKIASDQMALSFQ 168 Bradyrhizobium ...
WP_013121605  86 IGIPYSYESPIAYLKTNVEGTYNVLQAARELGTEKVIVTSTSEVYGTAQFVPISEAHPINPQSPYAASKSGADFLALSYY 165 Thermincola potens
ZP_04526553  164 RSFNMPISIVRPFNTYGPRQSARAVIPTIITQLLSGEKQIKLGALSPTRDFNYVKDTVNGFIK--IAQSKKTIGEEINIA 241 Clostridium but...
ZP_04584290  168 RSFDLPVVIVRPFNTYGPRQSARAVIPTIITQLLSGYEEIKLGSLHPTRDLVYVKDTVEGFVR--LAECDSAIGKEVNIA 245 Sulfurihydrogen...
ZP_05092212  166 NSFNLPVTIVRPFNTYGPRQSARAVIPTIITQILSGKKQIKLGNLRPTRDMNYVIDTVDGFIK--IAECDKLLGEVTNIG 243 Carboxydibrachi...
WP_012344332 168 RSFNLPVAIIRPFNTYGPRQSARAVIPTIISQILEGKTEIKLGSLSPTRDFNYVKDTAEAFIK--VAESDKTIGQVINAG 245 Clostridium bot...
WP_011824799 167 RSFETPVSVIRPFNTYGPRQSCRAVIPTIITQIAGGEKRIKLGSTTPTRDFNFILDTCSAFYE--VGKSEACVGQVVNAA 244 Prochlorococcus...
WP_012195792 165 HSFNIPVTVIRPFNTFGPRQSNRAVIPTIISQIASGAKKIELGSLSPTRDFTYVLDTCSAYIA--IANSNKVTGKVINAA 242 Prochlorococcus...
WP_012008109 165 KSFNTPVTILRPFNTYGPRQSARAVIPTIISQLASGKNKVSLGKLSPTRDFNYVQDTVNAFKA--VAFSKNTTGKIINCA 242 Prochlorococcus...
WP_012895974 161 RSFGLPVTIIRPFNTYGPRQSARAVIPTIIIQILSGKERIKLGNLRPTRDFNFVIDIVRGFYE--VGLHPDSVGEVFNLG 238 Thermotoga naph...
WP_011088730 169 ASFDMPVVVIRPFNTYGPRQSARAVIPTIISQIATGKRKIRLGAVSPTRDFSFVTDTARGLIAglTAPAEQSVGQTINLG 248 Bradyrhizobium ...
WP_013121605 166 RSFDLPVAVIRPFNTYGPRQSARAIIPTVIAQIAAGSRKIRLGSLTPTRDLTFVKDTAEGFIQ--VAVSEGSVGQVINVG 243 Thermincola potens
ZP_04526553  242 TQHEISIGKLAEELIKQINPSAEIVCDEQRIRPEKSEVNRLLGSNEKIKKLTDWEVQYT 300 Clostridium butyricum E4 str. BoNT E...
ZP_04584290  246 TQSEISIQDLAKKLINKINPNAKIVSEDVRIRPQNSEVERLLGSNEKLKELTGWIPETD 304 Sulfurihydrogenibium yellowstonense ...
ZP_05092212  244 SGKEISIGDLVRLISRLMGVEVEIVQEEQRFRPEKSEVERLVCDNKKIREFTGWEPRYS 302 Carboxydibrachium pacificum DSM 12653
WP_012344332 246 SNYEISIGDTVKKIINIMGNDVKILCDEERIRPEKSEVNRLWADNRKIKELTSWNPRYN 304 Clostridium botulinum
WP_011824799 245 SNYEISIGETVSLIADAMGARVEISSEAERVRPERSEVNRLFGDNSRIKRLTEWRPKYD 303 Prochlorococcus marinus
WP_012195792 243 SNFEISIGDTASLIASLMQSKVDLCTDSKRIRPINSEVNRLYGDNSLIKDLTDWQPKFS 301 Prochlorococcus marinus
WP_012008109 243 SNFEISIEDTAYLIADIMNKKIEISSESERERPENSEVNRLFGDNNLIKEITNWHPKYS 301 Prochlorococcus marinus
WP_012895974 239 TGREVSIGDLPKIIAKLIGKKVEVEMDKNRFRPEKSEVERLCADATKAAELSGWKPKYS 297 Thermotoga naphthophila
WP_011088730 249 SGFEISVGATVEMIADVMGVDIEIETDEARLRPANSEVERLWADNSKARQQLGWAPEFG 307 Bradyrhizobium diazoefficiens
WP_013121605 244 SNFEISIGDLAGLIARIMGAEIEIETEKERQRPAKSEVERLLADTAKAKALINWAPRYT 302 Thermincola potens
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap