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Report for CCDS9791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9791.1 Public Homo sapiens 14 ZFP36L1 24 110 108 CCDS HistoryNCBI Gene:677Re-query CCDS DB by CCDS ID:9791.1Re-query CCDS DB by GeneID:677See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9791.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336440.4 ENSP00000337386.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336440.4Link to Ensembl Protein Viewer:ENSP00000337386.3Re-query CCDS DB by Nucleotide ID:ENST00000336440Re-query CCDS DB by Protein ID:ENSP00000337386
Original member Current member EBI ENST00000439696.3 ENSP00000388402.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000439696.3Link to Ensembl Protein Viewer:ENSP00000388402.2Re-query CCDS DB by Nucleotide ID:ENST00000439696Re-query CCDS DB by Protein ID:ENSP00000388402
Original member Current member NCBI NM_001244698.2 NP_001231627.1 Accepted alive Link to Nucleotide Sequence:NM_001244698.2Link to Protein Sequence:NP_001231627.1Re-query CCDS DB by Nucleotide ID:NM_001244698Re-query CCDS DB by Protein ID:NP_001231627Link to BLAST:NP_001231627.1
Original member Current member NCBI NM_004926.4 NP_004917.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004926.4Link to Protein Sequence:NP_004917.2Re-query CCDS DB by Nucleotide ID:NM_004926Re-query CCDS DB by Protein ID:NP_004917Link to BLAST:NP_004917.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231627.1 338 Q07352 338 100% 0 0
NP_004917.2 338 Q07352 338 100% 0 0

Chromosomal Locations for CCDS 9791.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 68789533 68790492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 68792882 68792938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGACCACCACCCTCGTGTCTGCCACCATCTTCGACTTGAGCGAAGTTTTATGCAAGGGTAACAAGATGC
TCAACTATAGTGCTCCCAGTGCAGGGGGTTGCCTGCTGGACAGAAAGGCAGTGGGCACCCCTGCTGGTGG
GGGCTTCCCTCGGAGGCACTCAGTCACCCTGCCCAGCTCCAAGTTCCACCAGAACCAGCTCCTCAGCAGC
CTCAAGGGTGAGCCAGCCCCCGCTCTGAGCTCGCGAGACAGCCGCTTCCGAGACCGCTCCTTCTCGGAAG
GGGGCGAGCGGCTGCTGCCCACCCAGAAGCAGCCCGGGGGCGGCCAGGTCAACTCCAGCCGCTACAAGAC
GGAGCTGTGCCGCCCCTTTGAGGAAAACGGTGCCTGTAAGTACGGGGACAAGTGCCAGTTCGCACACGGC
ATCCACGAGCTCCGCAGCCTGACCCGCCACCCCAAGTACAAGACGGAGCTGTGCCGCACCTTCCACACCA
TCGGCTTTTGCCCCTACGGGCCCCGCTGCCACTTCATCCACAACGCTGAAGAGCGCCGTGCCCTGGCCGG
GGCCCGGGACCTCTCCGCTGACCGTCCCCGCCTCCAGCATAGCTTTAGCTTTGCTGGGTTTCCCAGTGCC
GCTGCCACCGCCGCTGCCACCGGGCTGCTGGACAGCCCCACGTCCATCACCCCACCCCCTATTCTGAGCG
CCGATGACCTCCTGGGCTCACCTACCCTGCCCGATGGCACCAATAACCCTTTTGCCTTCTCCAGCCAGGA
GCTGGCAAGCCTCTTTGCCCCTAGCATGGGGCTGCCCGGGGGTGGCTCCCCGACCACCTTCCTCTTCCGG
CCCATGTCCGAGTCCCCTCACATGTTTGACTCTCCCCCCAGCCCTCAGGATTCTCTCTCGGACCAGGAGG
GCTACCTGAGCAGCTCCAGCAGCAGCCACAGTGGCTCAGACTCCCCGACCTTGGACAACTCAAGACGCCT
GCCCATCTTCAGCAGACTTTCCATCTCAGATGACTAA

Translation (338 aa):
MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSSKFHQNQLLSS
LKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHG
IHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADRPRLQHSFSFAGFPSA
AATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFR
PMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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