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Report for CCDS94528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94528.1 Public Homo sapiens 9 LCN9 24 110 108 CCDS HistoryNCBI Gene:392399Re-query CCDS DB by CCDS ID:94528.1Re-query CCDS DB by GeneID:392399See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619315.2 ENSP00000482296.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619315.2Link to Ensembl Protein Viewer:ENSP00000482296.2Re-query CCDS DB by Nucleotide ID:ENST00000619315Re-query CCDS DB by Protein ID:ENSP00000482296
Original member Current member NCBI NM_001393661.1 NP_001380590.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001393661.1Link to Protein Sequence:NP_001380590.1Re-query CCDS DB by Nucleotide ID:NM_001393661Re-query CCDS DB by Protein ID:NP_001380590Link to BLAST:NP_001380590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380590.1 157 Q8WX39-2 157 100% 0 0

Chromosomal Locations for CCDS 94528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 135663322 135663417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135664162 135664298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135664722 135664795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135665245 135665355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135665688 135665743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGGCTCTGCTTCTGCTGAGCCTGGGGCTGAGCCTCATCGCAGCCCAGGAGTTCGATCCCCACACCGTTA
TGCAGAGGAACTACAACGTGGCCAGGGTTTCAGGGGTCTGGTATTCTATTTTCATGGCCTCAGATGACCT
GAATCGGATTAAAGAAAATGGAGACCTGAGGGTCTTCGTCCGGAATATTGAACACTTGAAGAACGGCAGC
CTAATATTTGATTTCGAATACATGGTGCAGGGGGAGTGTGTGGCTGTGGTCGTGGTCTGCGAGAAGACAG
AGAAGAATGGGGAATACTCCATCAACTATGAGGGCCAGAACACAGTGGCCGTCTCGGAGACTGACTACAG
GCTGTTCATCACCTTCCACCTCCAGAACTTCAGGAACGGGACCGAGACCCACACGCTGGCGCTCTATGAT
TTGAAGAAACCTGCGAAAAGTACGGACTTGGCTCACAAAATATCATCGACTTGA

Translation (157 aa):
MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFVRNIEHLKNGS
LIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFITFHLQNFRNGTETHTLALYD
LKKPAKSTDLAHKISST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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