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Report for CCDS94334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94334.1 Public Homo sapiens 8 SAMD12 24 110 108 CCDS HistoryNCBI Gene:401474Re-query CCDS DB by CCDS ID:94334.1Re-query CCDS DB by GeneID:401474See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94334.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409003.5 ENSP00000387133.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409003.5Link to Ensembl Protein Viewer:ENSP00000387133.5Re-query CCDS DB by Nucleotide ID:ENST00000409003Re-query CCDS DB by Protein ID:ENSP00000387133
Original member Current member NCBI NM_001349811.2 NP_001336740.1 Accepted alive Link to Nucleotide Sequence:NM_001349811.2Link to Protein Sequence:NP_001336740.1Re-query CCDS DB by Nucleotide ID:NM_001349811Re-query CCDS DB by Protein ID:NP_001336740Link to BLAST:NP_001336740.1

Chromosomal Locations for CCDS 94334.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 118197710 118197732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118379560 118379700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118439862 118439961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118580715 118580893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118621804 118621816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGGCTGTGGAAGCTCTCCACTGTGGTTTGAATCCACGGGGTATTGATCACCCTGCCCATGCTGAAGGTA
TTAAACTGCAAATTGAAGGTGAAGGTGTGGAATCTCAATCCATTAAAAATAAAAATTTCCAGAAGGTGCC
TGACCAGAAAGGAACTCCCAAGCGACTGCAGGCAGAAGCTGAGACGGCTAAGTCAGCTACGGTGAAGCTA
TCTAAACCGGTGGCTCTATGGACCCAGCAGGATGTCTGCAAGTGGTTGAAGAAACATTGTCCGAATCAGT
ATCAGATCTACAGGCGAGCCCTGCTGAGACTTACTGACAAAAAGCTCGAGCGAATGGGGATTGCCCAGGA
GAACCTCCGGCAGCACATCTTACAACAGGTGCTCCAGCTGAAGGTGCGAGAAGAAGTCAGAAATCTACAG
TTACTCACACAAGCATCATCTGAGGGTTCTCCATAA

Translation (151 aa):
MAVEALHCGLNPRGIDHPAHAEGIKLQIEGEGVESQSIKNKNFQKVPDQKGTPKRLQAEAETAKSATVKL
SKPVALWTQQDVCKWLKKHCPNQYQIYRRALLRLTDKKLERMGIAQENLRQHILQQVLQLKVREEVRNLQ
LLTQASSEGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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