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Report for CCDS94223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94223.1 Public Homo sapiens 7 TCAF2 24 110 108 CCDS HistoryNCBI Gene:285966Re-query CCDS DB by CCDS ID:94223.1Re-query CCDS DB by GeneID:285966See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94223.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518791.6 ENSP00000431079.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518791.6Link to Ensembl Protein Viewer:ENSP00000431079.2Re-query CCDS DB by Nucleotide ID:ENST00000518791Re-query CCDS DB by Protein ID:ENSP00000431079
Original member Current member NCBI NM_001365428.1 NP_001352357.1 Accepted alive Link to Nucleotide Sequence:NM_001365428.1Link to Protein Sequence:NP_001352357.1Re-query CCDS DB by Nucleotide ID:NM_001365428Re-query CCDS DB by Protein ID:NP_001352357Link to BLAST:NP_001352357.1

Chromosomal Locations for CCDS 94223.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143719903 143720674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143721281 143721378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143722658 143722871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143723211 143723450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143724360 143724730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGGGCCCTTCTTGCTCAATGCGGTGCGCTGGCTGGCCAGAGGCCAGACAGGCAAAGTTGGGGTGAACA
CAAATCTAAAAGATCTGTGTCCTCTCCTATCGGAGCATGGCCTGCAATGCAGCCTGGAGCCCCATCTGAA
CAGCGACTTGTGTGTCTACTGCTGCAAGGCGTACAGTGACAAGGAGGCTAAGCAGCTGCAGGAGTTTGTG
GCTGAGGGTGGGGGGCTGCTGATTGGGGGCCAGGCCTGGTGGTGGGCCTCCCAGAACCCTGGCCACTGCC
CCTTGGCTGGCTTCCCTGGTAACATCATCCTCAACTGCTTTGGCCTCAGCATCCTGCCTCAGACTCTCAA
AGCAGGCTGCTTCCCCGTTCCCACCCCTGAGATGAGAAGCTACCACTTCCGCAAGGCGCTCTCTCAATTC
CAGGCTATACTGAACCACGAGAATGGGAACTTGGAAAAGAGCTGTCTGGCAAAGTTGAGAGTTGATGGTG
CAGCCTTCCTACAGATTCCTGCGGAGGGGGTCCCTGCTTACATATCCCTGCACAGGCTCCTGAGGAAGAT
GCTACGAGGGTCTGGCCTCCCAGCTGTGAGCCGGGAAAATCCAGTTGCCAGTGACTCCTATGAGGCTGCG
GTGCTCTCCCTGGCCACTGGGCTGGCTCACTCTGGAACTGACTGCTCCCAGCTGGCCCAGGGGCTTGGCA
CCTGGACCTGCTCCTCCAGTTTGTACCCCTCAAAACACCCCATCACCGTGGAGATCAATGGAATCAACCC
AGGCAACAATGATTGCTGGGTGAGTACCGGGCTCTACCTCCTGGAAGGACAAAATGCAGAAGTCTCACTG
TCTGAAGCTGCTGCCTCTGCTGGCCTGAGGGTACAGATAGGCTGCCACACCGATGACCTTACCAAGGCCA
GGAAGCTATCTCGAGCCCCCGTGGTGACTCACCAATGCTGGATGGACAGGACTGAGCGGTCAGTCTCCTG
CCTCTGGGGCGGCCTCCTCTACGTCATCGTGCCCAAGGGCAGCCAACTAGGCCCTGTGCCTGTCACTATC
AGGGGAGCTGTGCCTGCCCCATACTACAAGCTGGGTAAGACATCGCTGGAGGAGTGGAAGAGGCAGATGC
AGGAGAACCTGGCTCCCTGGGGAGAGCTGGCCACGGACAACATCATCCTGACAGTGCCAACCACAAACCT
TCAGGCCCTGAAGGACCCCGAGCCTGTGCTCCGCCTCTGGGATGAGATGATGCAGGCTGTGGCCAGGCTG
GCGGCTGAGCCCTTCCCTTTCCGCCGTCCTGAGAGGATTGTGGCTGATGTGCAGATCTCAGCTGGCTGGA
TGCATTCAGGATACCCCATCATGTGCCACCTGGAGTCTGTGAAGGAGATCATCAATGAGATGGACATGAG
GAGCAGGGGTGTGTGGGGCCCCATCCATGAGCTGGGCCACAACCAACAGCGGCATGGATGGGAGTTCCCC
CCACACACTACTGAGGCCACCTGTAACCTTTGGTCAGTCTACGTGCATGAAACAGTCCTGGGGATCCCCA
GGGCTCAGGCCCACGAGGCTCTGAGCCCTCCAGAGCGAGAGAGGAGAATCAAGGCCCACCTGGGAAAGGG
AGCCCCCCTGTGTGACTGGAATGTATGGACAGCCCTGGAAACATATCTACAGGTACTGAGCAGAAATTCT
GGGAGAAGGGGATGA

Translation (564 aa):
MGPFLLNAVRWLARGQTGKVGVNTNLKDLCPLLSEHGLQCSLEPHLNSDLCVYCCKAYSDKEAKQLQEFV
AEGGGLLIGGQAWWWASQNPGHCPLAGFPGNIILNCFGLSILPQTLKAGCFPVPTPEMRSYHFRKALSQF
QAILNHENGNLEKSCLAKLRVDGAAFLQIPAEGVPAYISLHRLLRKMLRGSGLPAVSRENPVASDSYEAA
VLSLATGLAHSGTDCSQLAQGLGTWTCSSSLYPSKHPITVEINGINPGNNDCWVSTGLYLLEGQNAEVSL
SEAAASAGLRVQIGCHTDDLTKARKLSRAPVVTHQCWMDRTERSVSCLWGGLLYVIVPKGSQLGPVPVTI
RGAVPAPYYKLGKTSLEEWKRQMQENLAPWGELATDNIILTVPTTNLQALKDPEPVLRLWDEMMQAVARL
AAEPFPFRRPERIVADVQISAGWMHSGYPIMCHLESVKEIINEMDMRSRGVWGPIHELGHNQQRHGWEFP
PHTTEATCNLWSVYVHETVLGIPRAQAHEALSPPERERRIKAHLGKGAPLCDWNVWTALETYLQVLSRNS
GRRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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