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Report for CCDS94122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94122.1 Public Homo sapiens 7 GTF2IRD2 24 110 108 CCDS HistoryNCBI Gene:84163Re-query CCDS DB by CCDS ID:94122.1Re-query CCDS DB by GeneID:84163See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94122.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651129.1 ENSP00000498563.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651129.1Link to Ensembl Protein Viewer:ENSP00000498563.1Re-query CCDS DB by Nucleotide ID:ENST00000651129Re-query CCDS DB by Protein ID:ENSP00000498563
Original member Current member NCBI NM_001368300.2 NP_001355229.1 Accepted alive Link to Nucleotide Sequence:NM_001368300.2Link to Protein Sequence:NP_001355229.1Re-query CCDS DB by Nucleotide ID:NM_001368300Re-query CCDS DB by Protein ID:NP_001355229Link to BLAST:NP_001355229.1

Chromosomal Locations for CCDS 94122.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 74796662 74798265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74801985 74802013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74803298 74803481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74804777 74804860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74806934 74807011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74809108 74809173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74810896 74810952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74812739 74812816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74819554 74819597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74819969 74820023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74822427 74822455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74822624 74822807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74824933 74825052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74832805 74832943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74836280 74836383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 74849112 74849592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3336 nt):
ATGGCCCCAAAGCACAAGAGTAGTGATGCTGGGAATTTGGATAGGCCAAAGAGAAGCCGTAAAGTGCTTC
CTCTAAGTGAAAAGGTGAAAGTTCTCGACTTAATCAGGAAAGACAAAAAATCCTATGCTGAGGTTGCTAA
GATCTACGGGAAGAATGAATCTTCCATCCGTGAAATTGTGAAGAAGGAAAAAGAAATTCGTGCTAGTTTT
GCTGTCTCACCTCCAACTGCTAAAGTGACGGCCACAGTGCGTGATAAGTGCTTAGTTAAGATGGAACAGG
CACTGCATTTGTGGGTGGAAGAGATGAACAGAAAACGTGTTCCCATTGACAGCAACATGTTGCGCCAGAA
AGCTTTGAGCCTATACCAAGACTTCTGCAAGGGATGCTCTGAAACTGACACCAAGCCATTTACTGCGAGT
AAGGGATGGTTACACAGATTCAGGCATAGATTCTCACATCATTACAAGAAGAAGAAGAAGGGGATCATGG
CCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGACATT
CCTCGTGTCTGCCCTCGAATCCATGTGTAAAGAACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCATCGCA
GTGTACGAAACAGACGTGTTTGTCGTCGGAACCGAGAGAGGATGCGCTTTTGTTAATGCCAGGACGGATT
TTCAGAAAGATTTTGCAAAATACTGCGTTGCAGAGGGACTGTGTGAGGTGAAACCTCCCTGCCCTGTGAA
CGGGATGCAGGTCCACTCAGGCGAAACGGAAATACTCAGGAAGGCAGTGGAGGACTATTTCTGCTTTTGT
TATGGTAAAGCCTTAGGGACAACAGTGATGGTGCCTGTTCCCTATGAGAAGATGCTGCGAGACCAGTCGG
CTGTGGTAGTGCAGGGGCTTCCGGAAGGCGTTGCCTTTCAACACCCTGAGAATTACGACCTTGCAACCCT
GAAATGGATTTTGGAGAACAAAGCAGGGATTTCATTCATCATAAATAGACCCTTCCTAGGACCAGAGAGT
CAGCTGGGTGGCCCTGGGATGGTAACAGATGCGGAGAGATCCATAGTATCACCAAGTGAAAGCTGCGGCC
CCATCAATGTGAAAACTGAACCCATGGAAGATTCTGGCATTTCACTGAAAGCAGAAGCTGTCTCAGTCAA
GAAAGAATCAGAAGATCCTAATTACTATCAATATAATATGCAAGGAAGCCACCCTTCTTCCACAAGCAAT
GAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTCCGCTGGTCCCTTCAGAAGAACCAAATGAGG
ACCCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCCAGTGTTACAAATTCTGCAGCAGGTGT
TGAAGATCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGAAAGATTATCAAGCATTGAAAAG
ATTAAACAGCTAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTGAAGCAATTGGCGTGGATT
TCCCTGTGAAAGTTCCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATTGATGGCATGCCCCC
GGGGGTGGTATTCAAGGCCCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGAGGCAGCTGAG
TTTATCAAATTCACAGTCATCAGGCCGCTTCCAGGGCTTGAGCTCAGTAATGTGGGAAAACGCAAGATAG
ACCAGGAGGGCCGTGTGTTTCAAGAAAAGTGGGAGAGAGCGTATTTCTTCGTGGAAGTACAGAATATTCC
AACATGTCTCATATGCAAACAAAGCATGTCTGTGTCCAAAGAATATAACCTAAGACGCCACTATCAAACC
AATCACAGCAAGCATTATGACCAGTATATGGAAAGAATGCGTGACGAGAAGCTTCACGAGCTGAAAAAAG
GGCTCAGGAAGTATCTCTTAGGCTCATCAGACACCGAGTGTCCCGAGCAAAAACAAGTGTTTGCAAACCC
AAGTCCAACCCAGAAATCCCCCGTGCAGCCTGTAGAGGACCTAGCTGGGAACTTATGGGAGAAGTTACGT
GAAAAAATCAGGTCTTTTGTGGCATATTCTATCGCAATCGATGAGATCACGGATATAAATAATACCACCC
AGTTGGCCATATTCATCCGTGGTGTCGATGAGAATTTCGATGTGTCCGAAGAACTTCTGGACACGGTGCC
CATGACGGGTACAAAATCTGGCAACGAGATCTTTTCGCGTGTTGAGAAAAGCCTGAAAAACTTCTGTATC
GACTGGTCGAAATTAGTAAGCGTGGCCTCCACTGGCACCCCAGCGATGGTGGATGCCAATAACGGGCTTG
TCACAAAACTGAAGTCCAGGGTGGCGACGTTCTGCAAGGGTGCGGAACTGAAGTCCATCTGTTGTATAAT
TCATCCGGAATCACTCTGTGCTCAGAAGTTGAAGATGGACCACGTCATGGACGTGGTAGTGAAGTCCGTG
AACTGGATATGCTCCCGGGGACTGAACCACAGTGAGTTCACAACCTTGCTCTATGAGCTGGACAGCCAGT
ATGGTAGCCTCCTGTACTACACGGAGATTAAGTGGCTCAGTCGCGGGCTCGTGCTAAAGAGATTTTTCGA
ATCCTTGGAAGAAATCGACTCCTTCATGTCATCCAGAGGGAAACCCCTGCCTCAACTGAGCTCCATAGAT
TGGATCCGAGACCTGGCCTTCTTGGTTGACATGACGATGCATCTGAACGCTTTGAACATCTCTCTCCAAG
GACACTCCCAAATCGTCACGCAGATGTATGACCTGATCCGGGCGTTCCTAGCAAAACTGTGCCTCTGGGA
GACTCATTTGACGAGGAATAATCTGGCCCACTTTCCCACCCTGAAATTGGCTTCCAGAAATGAAAGCGAT
GGCCTGAACTACATTCCCAAAATCGCGGAACTCCAGACCGAATTCCAGAAAAGGCTGTCTGATTTCAAAC
TCTACGAAAGCGAACTGACTCTGTTCAGCTCCCCGTTCTCCACGAAGATCGACAGTGTGCACGAGGAGCT
CCAGATGGAGGTTATCGACCTGCAATGCAACACGGTCCTGAAGACGAAATACGACAAGGTGGGAATACCA
GAATTCTACAAGTACCTCTGGGGTAGCTACCCGAAATACAAGCACCATTGCGCAAAGATTCTTTCCATGT
TCGGGAGCACCTACATCTGCGAACAGCTGTTCTCCATTATGAAACTGAGCAAAACAAAATACTGCTCCCA
GTTAAAGGATTCCCAGTGGGATTCTGTACTCCACATCGCAACGTGA

Translation (1111 aa):
MAPKHKSSDAGNLDRPKRSRKVLPLSEKVKVLDLIRKDKKSYAEVAKIYGKNESSIREIVKKEKEIRASF
AVSPPTAKVTATVRDKCLVKMEQALHLWVEEMNRKRVPIDSNMLRQKALSLYQDFCKGCSETDTKPFTAS
KGWLHRFRHRFSHHYKKKKKGIMAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIA
VYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFC
YGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPES
QLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSN
EVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEK
IKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAE
FIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQT
NHSKHYDQYMERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLR
EKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFSRVEKSLKNFCI
DWSKLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSV
NWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSID
WIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLASRNESD
GLNYIPKIAELQTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIP
EFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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