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Report for CCDS9392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9392.1 Public Homo sapiens 13 TSC22D1 24 110 108 CCDS HistoryNCBI Gene:8848Re-query CCDS DB by CCDS ID:9392.1Re-query CCDS DB by GeneID:8848See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261489.6 ENSP00000261489.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261489.6Link to Ensembl Protein Viewer:ENSP00000261489.2Re-query CCDS DB by Nucleotide ID:ENST00000261489Re-query CCDS DB by Protein ID:ENSP00000261489
Original member Current member NCBI NM_006022.4 NP_006013.1 Accepted alive Link to Nucleotide Sequence:NM_006022.4Link to Protein Sequence:NP_006013.1Re-query CCDS DB by Nucleotide ID:NM_006022Re-query CCDS DB by Protein ID:NP_006013Link to BLAST:NP_006013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006013.1 144 Q15714-2 144 100% 0 0

Chromosomal Locations for CCDS 9392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 44434626 44434883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44436044 44436095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44436504 44436628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGAAATCCCAATGGTGTAGACCAGTGGCGATGGATCTAGGAGTTTACCAACTGAGACATTTTTCAATTT
CTTTCTTGTCATCCTTGCTGGGGACTGAAAACGCTTCTGTGAGACTTGATAATAGCTCCTCTGGTGCAAG
TGTGGTAGCTATTGACAACAAAATCGAGCAAGCTATGGATCTAGTGAAAAGCCATTTGATGTATGCGGTC
AGAGAAGAAGTGGAGGTCCTCAAAGAGCAAATCAAAGAACTAATAGAGAAAAATTCCCAGCTGGAGCAGG
AGAACAATCTGCTGAAGACACTGGCCAGTCCTGAGCAGCTTGCCCAGTTTCAGGCCCAGCTGCAGACTGG
CTCCCCCCCTGCCACCACCCAGCCACAGGGCACCACACAGCCCCCCGCCCAGCCAGCATCGCAGGGCTCA
GGACCAACCGCATAG

Translation (144 aa):
MKSQWCRPVAMDLGVYQLRHFSISFLSSLLGTENASVRLDNSSSGASVVAIDNKIEQAMDLVKSHLMYAV
REEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGS
GPTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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