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Report for CCDS93419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93419.1 Public Homo sapiens 3 SCHIP1 24 110 108 CCDS HistoryNCBI Gene:29970Re-query CCDS DB by CCDS ID:93419.1Re-query CCDS DB by GeneID:29970See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000482804.1 ENSP00000419230.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482804.1Link to Ensembl Protein Viewer:ENSP00000419230.1Re-query CCDS DB by Nucleotide ID:ENST00000482804Re-query CCDS DB by Protein ID:ENSP00000419230
Original member Current member NCBI NM_001394294.1 NP_001381223.1 Accepted alive Link to Nucleotide Sequence:NM_001394294.1Link to Protein Sequence:NP_001381223.1Re-query CCDS DB by Nucleotide ID:NM_001394294Re-query CCDS DB by Protein ID:NP_001381223Link to BLAST:NP_001381223.1

Chromosomal Locations for CCDS 93419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 159853380 159853457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159866163 159866281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159886207 159886324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159887708 159887905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159888820 159888943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159892097 159892190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159896723 159896774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGAATTTGGACAGTGATGGAATGGATGACATCATCAGTCAAGAATCCTCATTGGATATGGAGGGGAATT
ATAAAAAGGCACAGAAAAATGAGAGAGAGTCTATCAGACAGAAGTTGGCACTTGGAAGCTTCTTTGATGA
TGGCCCAGGAATTTATACCAGCTGTAGCAAAAGTGGGAAGCCAAGCCTTTCCTCCCGACTGCAGAGTGGG
ATGAACTTGCAGATATGCTTTGTCAACGACAGTGGCAGTGATAAGGACAGTGATGCTGATGACAGTAAGA
CTGAAACCAGCTTGGACACCCCCTTGTCTCCCATGAGCAAACAGAGTTCTTCCTATTCTGATAGAGACAC
TACTGAAGAGGAGTCTGAATCCTTGGATGACATGGACTTCCTTACAAGGCAAAAGAAATTGCAAGCTGAA
GCCAAAATGGCCCTTGCCATGGCCAAACCAATGGCCAAAATGCAAGTAGAAGTGGAGAAACAGAACAGGA
AAAAGTCTCCCGTCGCTGATCTTCTGCCACACATGCCTCATATAAGTGAATGCTTGATGAAAAGAAGTTT
AAAACCCACCGACCTGAGAGACATGACTATTGGGCAGCTACAAGTGATAGTCAATGATCTCCATTCCCAG
ATAGAAAGCTTGAATGAAGAGTTGGTCCAGCTGCTTCTCATCCGAGATGAGCTGCACACAGAGCAGGATG
CCATGCTGGTGGACATTGAAGACTTGACCAGACATGCTGAAAGTCAGCAGAAGCACATGGCAGAGAAAAT
GCCTGCAAAGTGA

Translation (260 aa):
MNLDSDGMDDIISQESSLDMEGNYKKAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSG
MNLQICFVNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAE
AKMALAMAKPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLHSQ
IESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHMAEKMPAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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