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Report for CCDS93404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93404.1 Public Homo sapiens 3 TM4SF1 24 110 108 CCDS HistoryNCBI Gene:4071Re-query CCDS DB by CCDS ID:93404.1Re-query CCDS DB by GeneID:4071See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000493348.1 ENSP00000419426.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493348.1Link to Ensembl Protein Viewer:ENSP00000419426.1Re-query CCDS DB by Nucleotide ID:ENST00000493348Re-query CCDS DB by Protein ID:ENSP00000419426
Current member NCBI NM_001410837.1 NP_001397766.1 Accepted alive Link to Nucleotide Sequence:NM_001410837.1Link to Protein Sequence:NP_001397766.1Re-query CCDS DB by Nucleotide ID:NM_001410837Re-query CCDS DB by Protein ID:NP_001397766Link to BLAST:NP_001397766.1

Chromosomal Locations for CCDS 93404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 149371829 149371867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149375680 149375769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 149377371 149377547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGTGCTATGGGAAGTGTGCACGATGCATCGGACATTCTCTGGTGGGGCTCGCCCTCCTGTGCATCGCGG
CTAATATTTTGCTTTACTTTCCCAATGGGGAAACAAAGTATGCCTCCGAAAACCACCTCAGCCGCTTCGT
GTGGTTCTTTTCTGGCATCGTAGGAGGTGGCCTGCTGATGCTCCTGCCAGCATTTGTCTTCATTGGGCTG
GAACAGGATGACTGCTGTGGCTGCTGTGGCCATGAAAACTGTGGCAAACGATGTGCGGTACCTTCTGGAT
ACCTCCACATGGTCCGAGTGCACTGA

Translation (101 aa):
MCYGKCARCIGHSLVGLALLCIAANILLYFPNGETKYASENHLSRFVWFFSGIVGGGLLMLLPAFVFIGL
EQDDCCGCCGHENCGKRCAVPSGYLHMVRVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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