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Report for CCDS93003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93003.1 Public Homo sapiens 20 EBF4 24 110 108 CCDS HistoryNCBI Gene:57593Re-query CCDS DB by CCDS ID:93003.1Re-query CCDS DB by GeneID:57593See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000609451.6 ENSP00000477023.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000609451.6Link to Ensembl Protein Viewer:ENSP00000477023.1Re-query CCDS DB by Nucleotide ID:ENST00000609451Re-query CCDS DB by Protein ID:ENSP00000477023
Original member Current member NCBI NM_001395167.1 NP_001382096.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395167.1Link to Protein Sequence:NP_001382096.1Re-query CCDS DB by Nucleotide ID:NM_001395167Re-query CCDS DB by Protein ID:NP_001382096Link to BLAST:NP_001382096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382096.1 602 Q9BQW3-2 602 100% 0 0

Chromosomal Locations for CCDS 93003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2693646 2693782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2705577 2705733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2705974 2706037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2706209 2706264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2707947 2708020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2709574 2709642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2748549 2748630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2749401 2749518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2749620 2749753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2749847 2749973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2751700 2751788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2751922 2751987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2752086 2752263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2752357 2752545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2755627 2755824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2758909 2758979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGTTCCCTGCGCAGGACGCTCTGCCCCGCAGCGGGCTGAACCTGAAGGAGGAGCCGCTGCTGCCCGCCG
GCCTGGGCTCAGTGCGCTCCTGGATGCAGGGCGCGGGCATCCTGGACGCCAGCACCGCGGCGCAGAGTGG
CGTGGGTCTGGCACGAGCACATTTTGAGAAGCAGCCTCCCTCCAACCTCAGGAAATCCAACTTCTTCCAC
TTCGTGCTGGCCATGTACGACCGGCAGGGGCAGCCCGTGGAGGTGGAGCGCACAGCCTTCATCGACTTCG
TGGAAAAGGACCGAGAGCCCGGGGCGGAAAAGACTAACAATGGGATCCATTACCGCCTCCGGCTGGTGTA
TAACAATGGACTGCGGACAGAGCAAGACCTCTACGTGCGTCTCATCGACTCCATGTCCAAACAGGCCATC
ATCTATGAGGGGCAGGACAAGAACCCCGAAATGTGCCGAGTGCTGCTCACCCATGAGATCATGTGCAGCC
GGTGCTGTGACCGGAAGAGCTGTGGCAACCGGAATGAGACGCCCTCAGACCCCGTCATCATTGACAGGTT
CTTCCTCAAGTTCTTCCTCAAATGCAACCAGAACTGCCTGAAGAATGCGGGGAATCCCAGAGACATGCGC
CGCTTCCAGGTGGTGGTGTCCACGACGGTGAGCGTGGACGGACACGTGCTGGCCGTGTCCGACAACATGT
TTGTGCACAACAACTCCAAGCATGGCCGCAGGGCGCGCCGCCTGGACCCCTCCGAAGCTGCCACCCCCTG
CATCAAGGCCATCAGCCCCGGGGAGGGCTGGACCACGGGCGGCGCCACCGTCATTGTCATCGGCGACAAC
TTCTTCGACGGGTTGCAGGTCGTGTTCGGAAACGTGCTCGTGTGGAGCGAGCTCATCACGCCCCACGCCA
TCCGGGTGCAGACGCCCCCGCGGCACATCCCCGGGGTGGTGGAGGTGACCCTCTCCTACAAGTCCAAGCA
GTTTTGCAAGGGATGCCCCGGCCGCTTTGTCTACACAGCTCTGAACGAGCCCACCATTGACTACGGATTC
CAGAGGCTACAGAAAGTCATTCCCAGACACCCCGGAGACCCCGAGAGGCTGCCCAAGGAAGTGCTGCTGA
AGCGGGCGGCCGACTTGGCAGAAGCCCTGTACGGAGTGCCCGGCAGTAACCAGGAGCTGCTCCTGAAGCG
CGCGGCGGACGTGGCCGAGGCTCTGTACAGCACCCCCCGCGCACCCGGGCCGCTCGCACCCCTGGCCCCG
AGCCACCCACACCCCGCCGTCGTGGGCATCAACGCCTTCAGCAGCCCGCTGGCCATCGCCGTCGGGGACG
CCACCCCGGGGCCCGAGCCGGGCTACGCGCGCAGCTGCAGCAGCGCGTCCCCCCGCGGGTTCGCGCCCAG
CCCCGGCTCGCAGCAGAGCGGCTACGGCGGCGGCCTCGGAGCTGGCCTGGGCGGCTACGGCGCGCCGGGC
GTGGCCGGCCTCGGCGTGCCTGGGTCCCCCAGCTTCCTCAATGGCTCCACCGCCACCTCGCCCTTCGCCA
TCATGCCCTCTAGCCCCCCGCTGGCGGCTGCCTCCTCCATGTCCCTCCCGGCCGCTGCCCCCACCACCAG
CGTGTTCTCCTTCTCGCCTGTCAACATGATCTCCGCCGTCAAACAGAGGAGCGCCTTCGCCCCCGTGCTG
CGCCCCCCAAGCTCCCCACCCCAGGCCTGCCCCAGAGCCCACGGAGAGGGGCTTCCAGACCAGTCTTTTG
AGGATTCTGACAAGTTTCACTCTCCAGCCCGGGGGCTTCAGGGCCTGGCATACTCCTAA

Translation (602 aa):
MFPAQDALPRSGLNLKEEPLLPAGLGSVRSWMQGAGILDASTAAQSGVGLARAHFEKQPPSNLRKSNFFH
FVLAMYDRQGQPVEVERTAFIDFVEKDREPGAEKTNNGIHYRLRLVYNNGLRTEQDLYVRLIDSMSKQAI
IYEGQDKNPEMCRVLLTHEIMCSRCCDRKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMR
RFQVVVSTTVSVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPGEGWTTGGATVIVIGDN
FFDGLQVVFGNVLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGCPGRFVYTALNEPTIDYGF
QRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPGSNQELLLKRAADVAEALYSTPRAPGPLAPLAP
SHPHPAVVGINAFSSPLAIAVGDATPGPEPGYARSCSSASPRGFAPSPGSQQSGYGGGLGAGLGGYGAPG
VAGLGVPGSPSFLNGSTATSPFAIMPSSPPLAAASSMSLPAAAPTTSVFSFSPVNMISAVKQRSAFAPVL
RPPSSPPQACPRAHGEGLPDQSFEDSDKFHSPARGLQGLAYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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