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Report for CCDS9290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9290.1 Public Homo sapiens 13 GJB2 24 110 108 CCDS HistoryNCBI Gene:2706Re-query CCDS DB by CCDS ID:9290.1Re-query CCDS DB by GeneID:2706See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9290.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382844.2 ENSP00000372295.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382844.2Link to Ensembl Protein Viewer:ENSP00000372295.1Re-query CCDS DB by Nucleotide ID:ENST00000382844Re-query CCDS DB by Protein ID:ENSP00000372295
Original member Current member EBI ENST00000382848.5 ENSP00000372299.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382848.5Link to Ensembl Protein Viewer:ENSP00000372299.4Re-query CCDS DB by Nucleotide ID:ENST00000382848Re-query CCDS DB by Protein ID:ENSP00000372299
Original member Current member NCBI NM_004004.6 NP_003995.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004004.6Link to Protein Sequence:NP_003995.2Re-query CCDS DB by Nucleotide ID:NM_004004Re-query CCDS DB by Protein ID:NP_003995Link to BLAST:NP_003995.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003995.2 226 P29033 226 100% 0 0

Chromosomal Locations for CCDS 9290.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 20188901 20189581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGATTGGGGCACGCTGCAGACGATCCTGGGGGGTGTGAACAAACACTCCACCAGCATTGGAAAGATCT
GGCTCACCGTCCTCTTCATTTTTCGCATTATGATCCTCGTTGTGGCTGCAAAGGAGGTGTGGGGAGATGA
GCAGGCCGACTTTGTCTGCAACACCCTGCAGCCAGGCTGCAAGAACGTGTGCTACGATCACTACTTCCCC
ATCTCCCACATCCGGCTATGGGCCCTGCAGCTGATCTTCGTGTCCACGCCAGCGCTCCTAGTGGCCATGC
ACGTGGCCTACCGGAGACATGAGAAGAAGAGGAAGTTCATCAAGGGGGAGATAAAGAGTGAATTTAAGGA
CATCGAGGAGATCAAAACCCAGAAGGTCCGCATCGAAGGCTCCCTGTGGTGGACCTACACAAGCAGCATC
TTCTTCCGGGTCATCTTCGAAGCCGCCTTCATGTACGTCTTCTATGTCATGTACGACGGCTTCTCCATGC
AGCGGCTGGTGAAGTGCAACGCCTGGCCTTGTCCCAACACTGTGGACTGCTTTGTGTCCCGGCCCACGGA
GAAGACTGTCTTCACAGTGTTCATGATTGCAGTGTCTGGAATTTGCATCCTGCTGAATGTCACTGAATTG
TGTTATTTGCTAATTAGATATTGTTCTGGGAAGTCAAAAAAGCCAGTTTAA

Translation (226 aa):
MDWGTLQTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGCKNVCYDHYFP
ISHIRLWALQLIFVSTPALLVAMHVAYRRHEKKRKFIKGEIKSEFKDIEEIKTQKVRIEGSLWWTYTSSI
FFRVIFEAAFMYVFYVMYDGFSMQRLVKCNAWPCPNTVDCFVSRPTEKTVFTVFMIAVSGICILLNVTEL
CYLLIRYCSGKSKKPV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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